Wall clock time and date at job start Sat Mar 6 2021 08:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42902 * 109.47708 * 2 1 4 4 C 1.35901 * 116.99380 * 275.05159 * 3 2 1 5 5 C 1.38717 * 120.04848 * 185.43664 * 4 3 2 6 6 C 1.38164 * 119.94149 * 179.97438 * 5 4 3 7 7 C 1.50695 * 119.97321 * 180.02562 * 6 5 4 8 8 O 1.42900 * 109.47160 * 299.99902 * 7 6 5 9 9 Si 1.86305 * 109.47282 * 180.02562 * 7 6 5 10 10 C 1.38254 * 120.05501 * 359.97438 * 6 5 4 11 11 C 1.38278 * 120.11247 * 0.02562 * 10 6 5 12 12 C 1.38128 * 120.05462 * 359.97433 * 11 10 6 13 13 C 1.50705 * 109.47105 * 120.00061 * 2 1 3 14 14 O 1.20835 * 120.00006 * 245.00109 * 13 2 1 15 15 O 1.34230 * 120.00325 * 64.99510 * 13 2 1 16 16 C 1.45196 * 117.00090 * 180.02562 * 15 13 2 17 17 C 1.53006 * 109.46993 * 179.97438 * 16 15 13 18 18 H 1.09001 * 112.85015 * 316.19730 * 17 16 15 19 19 C 1.53781 * 113.60821 * 87.50361 * 17 16 15 20 20 C 1.53788 * 87.07936 * 139.97966 * 19 17 16 21 21 H 1.09001 * 113.68818 * 89.12217 * 20 19 17 22 22 O 1.42897 * 113.61753 * 220.01525 * 20 19 17 23 23 C 1.53778 * 113.61460 * 185.00023 * 17 16 15 24 24 H 1.08998 * 109.47379 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47197 * 300.00429 * 1 2 3 26 26 H 1.09005 * 109.46814 * 59.99872 * 1 2 3 27 27 H 1.09001 * 109.47197 * 239.99571 * 2 1 3 28 28 H 1.07996 * 120.03337 * 0.25542 * 5 4 3 29 29 H 1.08996 * 109.47324 * 59.99942 * 7 6 5 30 30 H 0.96696 * 114.00104 * 179.97438 * 8 7 6 31 31 H 1.48501 * 109.99784 * 298.67972 * 9 7 6 32 32 H 1.48497 * 109.99930 * 59.99943 * 9 7 6 33 33 H 1.07998 * 119.94133 * 179.97438 * 10 6 5 34 34 H 1.07999 * 119.97758 * 180.02562 * 11 10 6 35 35 H 1.07999 * 120.02498 * 180.02562 * 12 11 10 36 36 H 1.08999 * 109.47538 * 299.99807 * 16 15 13 37 37 H 1.09005 * 109.46946 * 60.00396 * 16 15 13 38 38 H 1.09004 * 113.61501 * 254.52701 * 19 17 16 39 39 H 1.09000 * 113.62158 * 25.43468 * 19 17 16 40 40 H 0.96703 * 114.00001 * 277.49896 * 22 20 19 41 41 H 1.09007 * 113.61505 * 334.57334 * 23 17 16 42 42 H 1.09001 * 113.61498 * 105.47044 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.1116 1.9643 -1.2062 5 6 2.6723 3.2302 -1.2923 6 6 2.7786 3.8553 -2.5199 7 6 3.3882 5.2302 -2.6143 8 8 2.6246 6.1450 -1.8256 9 14 3.3849 5.7903 -4.3912 10 6 2.3271 3.2200 -3.6618 11 6 1.7678 1.9582 -3.5786 12 6 1.6593 1.3290 -2.3537 13 6 2.0323 -0.7104 1.2305 14 8 2.6506 -0.1002 2.0704 15 8 1.7928 -2.0211 1.3936 16 6 2.3059 -2.6395 2.6030 17 6 1.9369 -4.1243 2.6126 18 1 0.9072 -4.3066 2.3051 19 6 2.9631 -5.0186 1.8969 20 6 2.7489 -6.0362 3.0299 21 1 1.9420 -6.7431 2.8368 22 8 3.9528 -6.6730 3.4625 23 6 2.3292 -4.8482 3.9114 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.0297 3.7248 -0.4013 29 1 4.4131 5.1995 -2.2446 30 1 2.9605 7.0517 -1.8393 31 1 4.2018 4.8650 -5.2169 32 1 1.9930 5.8366 -4.9065 33 1 2.4108 3.7105 -4.6203 34 1 1.4162 1.4638 -4.4721 35 1 1.2227 0.3433 -2.2894 36 1 3.3904 -2.5340 2.6330 37 1 1.8690 -2.1513 3.4742 38 1 2.6283 -5.3735 0.9221 39 1 3.9680 -4.5971 1.8728 40 1 4.2218 -7.4211 2.9119 41 1 3.1609 -4.3800 4.4381 42 1 1.4828 -5.0654 4.5630 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_2302812_11354868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:42:37 Heat of formation + Delta-G solvation = -141.166897 kcal Electronic energy + Delta-G solvation = -24966.053112 eV Core-core repulsion = 21072.656179 eV Total energy + Delta-G solvation = -3893.396933 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.139 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.21100 -41.30740 -40.30037 -39.28697 -37.75279 -37.33424 -36.04091 -33.65437 -32.69053 -31.12491 -29.72990 -26.92553 -26.79136 -26.23054 -23.94941 -23.67062 -22.90595 -21.54049 -20.59301 -19.55401 -18.77240 -18.54786 -18.42999 -18.09619 -17.79695 -17.51387 -16.67597 -16.58716 -16.35512 -15.95520 -15.67717 -15.17825 -15.10868 -14.70689 -14.67113 -14.45106 -14.16599 -13.82990 -13.71243 -13.59573 -13.51743 -13.14980 -13.06671 -12.83886 -12.52342 -12.47744 -12.26947 -12.25388 -12.21999 -11.88143 -11.75601 -11.55765 -11.26272 -10.77293 -10.44933 -10.00131 -9.49117 -4.92999 0.02026 0.17734 0.82511 0.85501 1.28355 1.65470 1.95830 2.18932 2.46545 3.08365 3.32168 3.35098 3.39494 3.48445 3.53925 3.61623 3.67219 3.77111 3.79321 3.83150 3.91039 4.08902 4.10407 4.14146 4.14404 4.30076 4.35873 4.45669 4.51314 4.59906 4.61506 4.71265 4.75857 4.82096 4.93416 4.98642 5.05270 5.06294 5.11314 5.15612 5.25932 5.35113 5.47558 6.09225 6.42771 6.86088 6.86876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.092 3.908 3 O -0.313 6.313 4 C 0.120 3.880 5 C -0.141 4.141 6 C -0.051 4.051 7 C -0.091 4.091 8 O -0.565 6.565 9 Si 0.788 3.212 10 C -0.177 4.177 11 C -0.069 4.069 12 C -0.203 4.203 13 C 0.467 3.533 14 O -0.526 6.526 15 O -0.340 6.340 16 C 0.075 3.925 17 C -0.101 4.101 18 H 0.124 0.876 19 C -0.163 4.163 20 C 0.076 3.924 21 H 0.106 0.894 22 O -0.584 6.584 23 C -0.126 4.126 24 H 0.112 0.888 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.139 0.861 28 H 0.125 0.875 29 H 0.091 0.909 30 H 0.404 0.596 31 H -0.284 1.284 32 H -0.293 1.293 33 H 0.124 0.876 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.396 0.604 41 H 0.080 0.920 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.589 -2.415 -4.973 5.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.035 3.965 3 O -0.227 6.227 4 C 0.075 3.925 5 C -0.159 4.159 6 C -0.051 4.051 7 C -0.199 4.199 8 O -0.375 6.375 9 Si 0.692 3.308 10 C -0.195 4.195 11 C -0.087 4.087 12 C -0.221 4.221 13 C 0.310 3.690 14 O -0.414 6.414 15 O -0.256 6.256 16 C 0.002 3.998 17 C -0.119 4.119 18 H 0.142 0.858 19 C -0.201 4.201 20 C 0.017 3.983 21 H 0.123 0.877 22 O -0.392 6.392 23 C -0.164 4.164 24 H 0.131 0.869 25 H 0.083 0.917 26 H 0.112 0.888 27 H 0.157 0.843 28 H 0.143 0.857 29 H 0.109 0.891 30 H 0.255 0.745 31 H -0.211 1.211 32 H -0.220 1.220 33 H 0.142 0.858 34 H 0.178 0.822 35 H 0.182 0.818 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.246 0.754 41 H 0.098 0.902 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.921 -2.473 -4.716 5.661 hybrid contribution 0.270 -0.722 0.378 0.858 sum -1.651 -3.194 -4.338 5.635 Atomic orbital electron populations 1.22370 0.89324 1.06203 1.04873 1.21939 0.97655 0.81599 0.95336 1.86135 1.81780 1.26543 1.28274 1.19138 0.96330 0.92812 0.84202 1.20335 1.03528 0.93594 0.98484 1.19519 0.97734 0.95269 0.92587 1.25043 0.96849 0.88132 1.09888 1.86447 1.55814 1.23452 1.71802 0.94197 0.78363 0.87232 0.70982 1.21044 1.03396 0.97737 0.97311 1.21245 0.95469 0.93573 0.98378 1.21619 1.05981 1.02862 0.91661 1.23499 0.76435 0.81372 0.87716 1.90725 1.38399 1.67675 1.44629 1.86437 1.72101 1.22439 1.44614 1.23290 0.98980 0.93282 0.84263 1.22371 1.01808 0.89535 0.98192 0.85767 1.23768 0.99232 0.97522 0.99595 1.23409 0.87617 0.92757 0.94520 0.87651 1.86489 1.43049 1.51330 1.58359 1.23120 1.01979 0.95087 0.96201 0.86932 0.91741 0.88819 0.84349 0.85651 0.89117 0.74460 1.21071 1.22040 0.85845 0.82153 0.81841 0.91626 0.90764 0.89470 0.90438 0.75391 0.90156 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.52 9.15 71.98 0.66 1.18 16 2 C 0.09 0.17 2.75 29.85 0.08 0.25 16 3 O -0.31 -2.83 9.34 -73.40 -0.69 -3.51 16 4 C 0.12 0.87 6.60 22.51 0.15 1.02 16 5 C -0.14 -1.31 9.55 22.37 0.21 -1.10 16 6 C -0.05 -0.36 5.42 -19.88 -0.11 -0.46 16 7 C -0.09 -0.15 2.81 71.23 0.20 0.05 16 8 O -0.57 -1.27 12.74 -148.98 -1.90 -3.17 16 9 Si 0.79 -1.38 29.79 68.60 2.04 0.66 16 10 C -0.18 -0.91 8.67 22.28 0.19 -0.71 16 11 C -0.07 -0.10 10.04 22.25 0.22 0.13 16 12 C -0.20 -0.29 8.24 22.36 0.18 -0.11 16 13 C 0.47 3.18 7.29 71.24 0.52 3.70 16 14 O -0.53 -8.12 16.26 28.36 0.46 -7.66 16 15 O -0.34 -0.87 10.21 -51.42 -0.53 -1.40 16 16 C 0.08 0.13 5.30 71.98 0.38 0.51 16 17 C -0.10 0.30 4.02 -10.27 -0.04 0.26 16 18 H 0.12 -0.73 8.14 -2.39 -0.02 -0.75 16 19 C -0.16 0.46 7.46 31.12 0.23 0.69 16 20 C 0.08 -0.20 5.21 31.12 0.16 -0.04 16 21 H 0.11 -0.71 8.14 -2.39 -0.02 -0.73 16 22 O -0.58 -0.51 13.67 -148.98 -2.04 -2.54 16 23 C -0.13 0.24 7.47 31.12 0.23 0.47 16 24 H 0.11 -0.85 8.14 -2.39 -0.02 -0.86 16 25 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 26 H 0.09 -0.46 6.91 -2.38 -0.02 -0.47 16 27 H 0.14 -0.55 6.31 -2.39 -0.02 -0.57 16 28 H 0.13 1.32 8.06 -2.91 -0.02 1.30 16 29 H 0.09 -0.15 7.96 -2.39 -0.02 -0.17 16 30 H 0.40 -3.54 8.74 -74.06 -0.65 -4.18 16 31 H -0.28 -0.81 7.11 99.48 0.71 -0.10 16 32 H -0.29 -1.53 7.11 99.48 0.71 -0.82 16 33 H 0.12 0.45 4.87 -2.91 -0.01 0.43 16 34 H 0.16 -0.78 8.06 -2.91 -0.02 -0.80 16 35 H 0.16 -0.87 5.43 -2.91 -0.02 -0.88 16 36 H 0.07 0.25 7.84 -2.39 -0.02 0.24 16 37 H 0.07 0.17 8.13 -2.38 -0.02 0.15 16 38 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 39 H 0.08 0.02 7.90 -2.39 -0.02 0.00 16 40 H 0.40 -2.93 9.12 -74.06 -0.68 -3.61 16 41 H 0.08 0.09 8.10 -2.38 -0.02 0.07 16 42 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 Total: 0.00 -24.85 352.50 0.41 -24.43 By element: Atomic # 1 Polarization: -12.42 SS G_CDS: -0.23 Total: -12.65 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 3.28 Total: 5.83 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -4.68 Total: -18.28 kcal Atomic # 14 Polarization: -1.38 SS G_CDS: 2.04 Total: 0.66 kcal Total: -24.85 0.41 -24.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_2302812_11354868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.733 kcal (2) G-P(sol) polarization free energy of solvation -24.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds