Wall clock time and date at job start Sat Mar 6 2021 06:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42892 * 109.47780 * 2 1 4 4 C 1.35903 * 116.99919 * 275.04873 * 3 2 1 5 5 C 1.38710 * 120.05595 * 185.41771 * 4 3 2 6 6 C 1.38166 * 119.94509 * 180.02562 * 5 4 3 7 7 C 1.50700 * 119.97094 * 180.02562 * 6 5 4 8 8 O 1.42891 * 109.47401 * 300.00001 * 7 6 5 9 9 Si 1.86303 * 109.47034 * 179.97438 * 7 6 5 10 10 C 1.38248 * 120.05255 * 359.74709 * 6 5 4 11 11 C 1.38282 * 120.11285 * 0.51039 * 10 6 5 12 12 C 1.38121 * 120.05207 * 359.48882 * 11 10 6 13 13 C 1.50699 * 109.47187 * 120.00519 * 2 1 3 14 14 O 1.20825 * 119.99849 * 244.99617 * 13 2 1 15 15 O 1.34226 * 120.00552 * 64.99378 * 13 2 1 16 16 C 1.45201 * 117.00478 * 180.02562 * 15 13 2 17 17 C 1.52996 * 109.47358 * 180.02562 * 16 15 13 18 18 H 1.08999 * 112.85333 * 43.79935 * 17 16 15 19 19 C 1.53786 * 113.61382 * 174.99810 * 17 16 15 20 20 C 1.53786 * 87.07825 * 139.98131 * 19 17 16 21 21 H 1.08999 * 113.61567 * 89.20159 * 20 19 17 22 22 O 1.42898 * 113.60984 * 220.01874 * 20 19 17 23 23 C 1.42901 * 114.00063 * 210.00073 * 22 20 19 24 24 C 1.53000 * 109.47125 * 59.99574 * 23 22 20 25 25 C 1.52995 * 109.47488 * 180.02562 * 23 22 20 26 26 C 1.53002 * 109.46992 * 300.00147 * 23 22 20 27 27 C 1.53781 * 87.08107 * 334.56469 * 20 19 17 28 28 H 1.09003 * 109.46933 * 59.99705 * 1 2 3 29 29 H 1.08997 * 109.47063 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46638 * 300.00080 * 1 2 3 31 31 H 1.09006 * 109.46638 * 239.99920 * 2 1 3 32 32 H 1.07998 * 120.02723 * 0.02562 * 5 4 3 33 33 H 1.09000 * 109.47292 * 60.00799 * 7 6 5 34 34 H 0.96701 * 114.00113 * 300.00449 * 8 7 6 35 35 H 1.48506 * 109.99927 * 58.68112 * 9 7 6 36 36 H 1.48502 * 110.00190 * 179.97438 * 9 7 6 37 37 H 1.08002 * 119.93887 * 180.25446 * 10 6 5 38 38 H 1.08000 * 119.97383 * 179.76635 * 11 10 6 39 39 H 1.08007 * 120.02118 * 180.27615 * 12 11 10 40 40 H 1.08997 * 109.46910 * 300.00147 * 16 15 13 41 41 H 1.08998 * 109.47373 * 59.99550 * 16 15 13 42 42 H 1.09001 * 113.61146 * 254.52662 * 19 17 16 43 43 H 1.09000 * 113.61510 * 25.34714 * 19 17 16 44 44 H 1.08998 * 109.46529 * 60.00442 * 24 23 22 45 45 H 1.09000 * 109.47045 * 180.02562 * 24 23 22 46 46 H 1.08994 * 109.47559 * 300.00649 * 24 23 22 47 47 H 1.09000 * 109.47647 * 59.99541 * 25 23 22 48 48 H 1.09000 * 109.47507 * 179.97438 * 25 23 22 49 49 H 1.08998 * 109.47054 * 300.00103 * 25 23 22 50 50 H 1.09004 * 109.47578 * 59.99576 * 26 23 22 51 51 H 1.09000 * 109.47053 * 180.02562 * 26 23 22 52 52 H 1.09006 * 109.47380 * 299.99939 * 26 23 22 53 53 H 1.08997 * 113.61752 * 270.88405 * 27 20 19 54 54 H 1.09006 * 113.61317 * 139.98437 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3471 0.0000 4 6 2.1117 1.9643 -1.2062 5 6 2.6721 3.2303 -1.2923 6 6 2.7775 3.8559 -2.5197 7 6 3.3868 5.2310 -2.6140 8 8 2.6235 6.1453 -1.8245 9 14 3.3837 5.7911 -4.3908 10 6 2.3298 3.2189 -3.6621 11 6 1.7659 1.9591 -3.5783 12 6 1.6583 1.3295 -2.3536 13 6 2.0324 -0.7105 1.2304 14 8 2.6507 -0.1004 2.0702 15 8 1.7929 -2.0211 1.3935 16 6 2.3060 -2.6396 2.6028 17 6 1.9382 -4.1247 2.6117 18 1 2.0973 -4.6060 1.6468 19 6 2.5406 -4.9014 3.7944 20 6 1.1984 -5.6464 3.8869 21 1 1.1546 -6.5452 3.2719 22 8 0.7591 -5.8698 5.2282 23 6 -0.0273 -7.0515 5.3931 24 6 0.7947 -8.2732 4.9778 25 6 -0.4405 -7.1887 6.8598 26 6 -1.2788 -6.9574 4.5179 27 6 0.5585 -4.4138 3.2264 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5139 -0.8901 32 1 3.0258 3.7265 -0.4006 33 1 4.4120 5.2003 -2.2450 34 1 1.6990 6.2235 -2.0970 35 1 1.9947 5.8065 -4.9161 36 1 3.9815 7.1463 -4.4973 37 1 2.4168 3.7079 -4.6211 38 1 1.4134 1.4651 -4.4717 39 1 1.2219 0.3436 -2.2893 40 1 3.3905 -2.5341 2.6328 41 1 1.8694 -2.1515 3.4740 42 1 3.3772 -5.5420 3.5153 43 1 2.7561 -4.2778 4.6620 44 1 1.6862 -8.3402 5.6013 45 1 0.1947 -9.1746 5.1031 46 1 1.0888 -8.1753 3.9328 47 1 -1.0263 -6.3183 7.1553 48 1 -1.0407 -8.0899 6.9854 49 1 0.4508 -7.2555 7.4836 50 1 -0.9848 -6.8594 3.4728 51 1 -1.8789 -7.8586 4.6440 52 1 -1.8645 -6.0870 4.8137 53 1 0.2308 -3.6572 3.9392 54 1 -0.2051 -4.6608 2.4888 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_2302812_14598394.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:46:51 Heat of formation + Delta-G solvation = -140.895813 kcal Electronic energy + Delta-G solvation = -32594.249594 eV Core-core repulsion = 28078.713940 eV Total energy + Delta-G solvation = -4515.535654 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.201 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.14909 -41.27295 -40.76811 -39.37304 -38.54736 -37.53076 -37.29747 -33.96274 -33.53360 -32.47202 -30.97158 -29.79888 -28.34957 -28.31479 -26.90043 -26.65977 -26.17058 -23.93674 -23.63263 -22.97231 -21.55595 -20.86887 -20.57822 -19.57508 -18.81801 -18.34242 -17.87945 -17.70115 -17.62081 -17.13889 -16.74243 -16.56365 -16.41395 -16.13634 -15.95161 -15.80853 -15.33315 -14.97288 -14.80714 -14.64136 -14.53065 -14.41586 -14.10034 -14.08744 -13.68950 -13.48474 -13.45186 -13.33140 -13.23677 -13.08085 -12.99318 -12.84155 -12.79313 -12.65933 -12.58792 -12.44956 -12.22581 -12.20387 -12.01819 -11.91956 -11.81728 -11.62189 -11.43622 -11.35419 -11.18805 -10.69694 -10.36373 -9.94981 -9.34198 -4.90890 0.16991 0.34804 0.87119 0.92626 1.30041 1.62082 1.96335 2.27771 2.63645 2.71807 3.22394 3.38675 3.44711 3.52628 3.55946 3.63742 3.67177 3.75033 3.79938 3.84016 3.91705 3.97714 4.07385 4.08631 4.11360 4.15944 4.22363 4.26255 4.32710 4.47120 4.51135 4.55562 4.56829 4.63280 4.66914 4.67605 4.75876 4.76495 4.78709 4.83915 4.91288 4.94421 4.96534 4.99842 5.02641 5.10950 5.12102 5.19428 5.22010 5.31419 5.33812 5.34926 5.39091 5.42484 5.65132 6.21736 6.42383 6.45842 6.48056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.094 3.906 3 O -0.318 6.318 4 C 0.112 3.888 5 C -0.146 4.146 6 C -0.081 4.081 7 C -0.095 4.095 8 O -0.551 6.551 9 Si 0.785 3.215 10 C -0.153 4.153 11 C -0.068 4.068 12 C -0.203 4.203 13 C 0.465 3.535 14 O -0.528 6.528 15 O -0.340 6.340 16 C 0.077 3.923 17 C -0.099 4.099 18 H 0.123 0.877 19 C -0.128 4.128 20 C 0.060 3.940 21 H 0.107 0.893 22 O -0.383 6.383 23 C 0.098 3.902 24 C -0.177 4.177 25 C -0.141 4.141 26 C -0.173 4.173 27 C -0.148 4.148 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.060 0.940 31 H 0.142 0.858 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.387 0.613 35 H -0.275 1.275 36 H -0.306 1.306 37 H 0.151 0.849 38 H 0.165 0.835 39 H 0.158 0.842 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.084 0.916 49 H 0.057 0.943 50 H 0.064 0.936 51 H 0.075 0.925 52 H 0.055 0.945 53 H 0.076 0.924 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.846 -7.948 -7.180 11.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.037 3.963 3 O -0.233 6.233 4 C 0.068 3.932 5 C -0.165 4.165 6 C -0.082 4.082 7 C -0.202 4.202 8 O -0.359 6.359 9 Si 0.689 3.311 10 C -0.170 4.170 11 C -0.086 4.086 12 C -0.221 4.221 13 C 0.308 3.692 14 O -0.416 6.416 15 O -0.256 6.256 16 C 0.004 3.996 17 C -0.117 4.117 18 H 0.141 0.859 19 C -0.165 4.165 20 C 0.003 3.997 21 H 0.125 0.875 22 O -0.303 6.303 23 C 0.059 3.941 24 C -0.234 4.234 25 C -0.198 4.198 26 C -0.231 4.231 27 C -0.186 4.186 28 H 0.115 0.885 29 H 0.128 0.872 30 H 0.079 0.921 31 H 0.159 0.841 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.236 0.764 35 H -0.202 1.202 36 H -0.234 1.234 37 H 0.168 0.832 38 H 0.182 0.818 39 H 0.176 0.824 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.074 0.926 48 H 0.103 0.897 49 H 0.076 0.924 50 H 0.083 0.917 51 H 0.094 0.906 52 H 0.074 0.926 53 H 0.095 0.905 54 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.291 -6.972 -6.783 9.993 hybrid contribution -0.742 0.545 1.322 1.611 sum -3.032 -6.427 -5.461 8.962 Atomic orbital electron populations 1.22361 0.89550 1.06034 1.04774 1.21906 0.97440 0.81748 0.95218 1.86131 1.81917 1.26441 1.28799 1.19163 0.96927 0.92962 0.84166 1.20288 1.03817 0.93711 0.98638 1.20150 0.98773 0.96505 0.92759 1.25470 0.97911 0.86812 1.10015 1.86579 1.27265 1.63676 1.58395 0.93902 0.81997 0.81107 0.74103 1.21239 1.01207 0.96826 0.97775 1.21335 0.95382 0.93910 0.97926 1.21647 1.05791 1.02666 0.92024 1.23583 0.76395 0.81378 0.87816 1.90723 1.38497 1.67696 1.44712 1.86437 1.72189 1.22528 1.44460 1.23258 0.99384 0.93044 0.83960 1.22341 0.97630 0.91413 1.00342 0.85912 1.23244 0.97434 0.98525 0.97347 1.23682 0.94707 0.97207 0.84153 0.87542 1.88024 1.70175 1.44068 1.28056 1.21679 0.90721 0.85033 0.96657 1.22446 1.00771 0.98079 1.02091 1.21802 1.01758 1.02737 0.93489 1.22441 0.97654 1.02953 1.00007 1.23605 0.96789 0.98530 0.99636 0.88534 0.87201 0.92127 0.84122 0.86888 0.86278 0.76425 1.20150 1.23411 0.83161 0.81764 0.82415 0.90859 0.91641 0.89051 0.89910 0.92325 0.90427 0.91532 0.92560 0.89706 0.92430 0.91704 0.90605 0.92563 0.90515 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.65 9.15 71.98 0.66 1.31 16 2 C 0.09 0.08 2.75 29.85 0.08 0.16 16 3 O -0.32 -2.47 9.34 -73.43 -0.69 -3.15 16 4 C 0.11 0.50 6.60 22.50 0.15 0.65 16 5 C -0.15 -0.91 9.55 22.37 0.21 -0.70 16 6 C -0.08 -0.14 5.39 -19.88 -0.11 -0.25 16 7 C -0.09 -0.12 2.82 71.24 0.20 0.08 16 8 O -0.55 -2.82 12.77 -148.98 -1.90 -4.72 16 9 Si 0.78 -1.79 29.79 68.60 2.04 0.25 16 10 C -0.15 0.42 8.67 22.28 0.19 0.61 16 11 C -0.07 0.31 10.04 22.25 0.22 0.54 16 12 C -0.20 0.47 8.24 22.36 0.18 0.65 16 13 C 0.47 2.98 7.29 71.24 0.52 3.50 16 14 O -0.53 -8.08 16.25 28.39 0.46 -7.62 16 15 O -0.34 -0.77 10.21 -51.38 -0.52 -1.30 16 16 C 0.08 0.12 5.30 71.98 0.38 0.50 16 17 C -0.10 0.28 4.02 -10.27 -0.04 0.24 16 18 H 0.12 -0.71 8.14 -2.39 -0.02 -0.73 16 19 C -0.13 0.25 7.47 31.12 0.23 0.48 16 20 C 0.06 -0.08 2.82 31.12 0.09 0.01 16 21 H 0.11 -0.45 5.54 -2.39 -0.01 -0.47 16 22 O -0.38 -1.30 10.00 -148.98 -1.49 -2.79 16 23 C 0.10 -0.02 1.11 -10.79 -0.01 -0.03 16 24 C -0.18 0.46 8.38 71.98 0.60 1.07 16 25 C -0.14 0.05 8.84 71.98 0.64 0.68 16 26 C -0.17 0.40 8.38 71.98 0.60 1.00 16 27 C -0.15 0.25 7.46 31.12 0.23 0.48 16 28 H 0.10 -0.62 6.91 -2.39 -0.02 -0.64 16 29 H 0.11 -0.86 8.14 -2.39 -0.02 -0.88 16 30 H 0.06 -0.01 8.14 -2.38 -0.02 -0.03 16 31 H 0.14 -0.77 6.31 -2.38 -0.02 -0.79 16 32 H 0.11 1.09 8.06 -2.91 -0.02 1.07 16 33 H 0.12 0.09 7.96 -2.39 -0.02 0.07 16 34 H 0.39 -0.40 8.70 -74.06 -0.64 -1.05 16 35 H -0.28 -0.10 7.11 99.48 0.71 0.60 16 36 H -0.31 -1.80 7.11 99.48 0.71 -1.09 16 37 H 0.15 -1.10 4.87 -2.91 -0.01 -1.12 16 38 H 0.16 -1.80 8.06 -2.91 -0.02 -1.83 16 39 H 0.16 -1.27 5.43 -2.91 -0.02 -1.29 16 40 H 0.07 0.16 8.13 -2.39 -0.02 0.14 16 41 H 0.07 0.25 7.84 -2.39 -0.02 0.24 16 42 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 43 H 0.08 0.06 8.10 -2.39 -0.02 0.04 16 44 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 45 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 46 H 0.07 -0.27 6.24 -2.39 -0.01 -0.29 16 47 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 48 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 49 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 50 H 0.06 -0.23 7.02 -2.38 -0.02 -0.24 16 51 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 52 H 0.06 -0.02 8.14 -2.38 -0.02 -0.04 16 53 H 0.08 0.12 7.90 -2.39 -0.02 0.10 16 54 H 0.08 -0.31 8.14 -2.38 -0.02 -0.33 16 Total: 0.00 -21.53 431.64 3.23 -18.30 By element: Atomic # 1 Polarization: -10.26 SS G_CDS: 0.29 Total: -9.98 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 5.04 Total: 11.00 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -4.14 Total: -19.58 kcal Atomic # 14 Polarization: -1.79 SS G_CDS: 2.04 Total: 0.25 kcal Total: -21.53 3.23 -18.30 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_2302812_14598394.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.597 kcal (2) G-P(sol) polarization free energy of solvation -21.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds