Wall clock time and date at job start Sat Mar 6 2021 07:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42904 * 109.47149 * 2 1 4 4 C 1.35898 * 117.00048 * 275.20819 * 3 2 1 5 5 C 1.38719 * 120.05597 * 5.19835 * 4 3 2 6 6 C 1.38162 * 119.94404 * 179.71826 * 5 4 3 7 7 C 1.38251 * 120.05448 * 0.58148 * 6 5 4 8 8 C 1.38287 * 120.11017 * 359.67168 * 7 6 5 9 9 C 1.50699 * 119.97021 * 180.02562 * 8 7 6 10 10 O 1.42907 * 109.46959 * 245.02362 * 9 8 7 11 11 Si 1.86302 * 109.47096 * 5.02338 * 9 8 7 12 12 H 1.48495 * 109.47172 * 60.00362 * 11 9 8 13 13 H 1.48505 * 109.47091 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47070 * 299.99745 * 11 9 8 15 15 C 1.38122 * 120.05535 * 0.04882 * 8 7 6 16 16 C 1.50693 * 109.47282 * 120.00095 * 2 1 3 17 17 O 1.20827 * 120.00375 * 244.99951 * 16 2 1 18 18 O 1.34239 * 119.99942 * 64.99644 * 16 2 1 19 19 C 1.45193 * 116.99733 * 180.02562 * 18 16 2 20 20 C 1.47206 * 109.46704 * 180.02562 * 19 18 16 21 21 C 5.83064 * 91.36798 * 153.30596 * 2 1 3 22 22 C 7.10439 * 88.34182 * 158.28695 * 2 1 3 23 23 C 1.39270 * 120.05312 * 259.10853 * 22 21 20 24 24 C 1.39421 * 119.75260 * 179.73050 * 23 22 21 25 25 C 1.43200 * 120.06878 * 180.29551 * 24 23 22 26 26 N 9.87027 * 74.77042 * 182.16798 * 2 1 3 27 27 C 1.39656 * 119.86010 * 0.57088 * 24 23 22 28 28 C 1.38300 * 120.10963 * 359.70454 * 27 24 23 29 29 F 1.35093 * 119.87677 * 180.02562 * 28 27 24 30 30 C 1.38300 * 120.25203 * 359.97438 * 28 27 24 31 31 H 1.09003 * 109.47035 * 300.00371 * 1 2 3 32 32 H 1.09002 * 109.47330 * 59.99450 * 1 2 3 33 33 H 1.08988 * 109.47251 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46656 * 240.00301 * 2 1 3 35 35 H 1.08002 * 120.02866 * 0.02562 * 5 4 3 36 36 H 1.08002 * 119.97770 * 180.27816 * 6 5 4 37 37 H 1.07997 * 119.94239 * 179.69816 * 7 6 5 38 38 H 1.08994 * 109.47035 * 125.02647 * 9 8 7 39 39 H 0.96702 * 114.00071 * 60.00371 * 10 9 8 40 40 H 1.07998 * 120.02389 * 179.97438 * 15 8 7 41 41 H 1.09002 * 109.47137 * 299.99302 * 19 18 16 42 42 H 1.08996 * 109.47322 * 60.00321 * 19 18 16 43 43 H 1.08001 * 120.12290 * 0.02873 * 23 22 21 44 44 H 1.08000 * 119.94935 * 179.72320 * 27 24 23 45 45 H 1.07991 * 119.93337 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.1084 1.9656 -1.2059 5 6 1.6568 1.3298 -2.3531 6 6 1.7564 1.9630 -3.5771 7 6 2.3164 3.2242 -3.6607 8 6 2.7721 3.8580 -2.5192 9 6 3.3816 5.2330 -2.6139 10 8 4.7604 5.1694 -2.2437 11 14 3.2363 5.8575 -4.3631 12 1 1.8036 5.9236 -4.7477 13 1 3.8374 7.2122 -4.4566 14 1 3.9529 4.9343 -5.2794 15 6 2.6696 3.2316 -1.2924 16 6 2.0324 -0.7104 1.2304 17 8 2.6507 -0.1003 2.0702 18 8 1.7929 -2.0211 1.3934 19 6 2.3060 -2.6395 2.6027 20 6 1.9521 -4.0683 2.6113 21 6 1.6692 -5.2077 2.6185 22 6 1.3245 -6.5976 2.6272 23 6 1.3793 -7.3224 3.8152 24 6 1.0369 -8.6739 3.8176 25 6 1.0848 -9.4240 5.0364 26 7 -1.0628 -9.5168 -0.3603 27 6 0.6526 -9.2959 2.6277 28 6 0.6056 -8.5720 1.4502 29 9 0.2327 -9.1783 0.3020 30 6 0.9379 -7.2296 1.4438 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0275 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.2233 0.3427 -2.2889 36 1 1.4009 1.4703 -4.4700 37 1 2.3978 3.7154 -4.6190 38 1 2.8557 5.9105 -1.9413 39 1 5.2906 4.5833 -2.8009 40 1 3.0260 3.7268 -0.4013 41 1 3.3905 -2.5341 2.6327 42 1 1.8692 -2.1514 3.4739 43 1 1.6814 -6.8381 4.7321 44 1 0.3913 -10.3438 2.6271 45 1 0.8991 -6.6692 0.5215 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_2302812_15358960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:13:30 Heat of formation + Delta-G solvation = 281.162152 kcal Electronic energy + Delta-G solvation = -31466.565277 eV Core-core repulsion = 26619.583108 eV Total energy + Delta-G solvation = -4846.982169 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 383.117 amu Computer time = 15.82 seconds Orbital eigenvalues (eV) -51.66222 -42.22572 -41.24456 -40.97333 -39.38992 -38.00108 -37.28145 -35.86920 -33.92777 -33.52139 -32.54924 -32.41254 -30.99280 -29.00499 -26.89536 -26.87339 -26.23082 -26.01833 -24.20256 -23.73870 -23.23872 -21.62418 -21.59102 -19.64244 -19.20884 -18.86584 -18.55622 -18.25862 -18.04278 -17.92453 -17.82599 -17.63313 -17.20195 -16.82362 -16.61311 -16.49301 -16.17706 -15.79465 -15.51362 -15.34034 -15.13707 -15.03840 -14.74116 -14.62992 -14.48735 -14.22225 -14.02571 -13.72935 -13.61886 -13.55367 -13.10583 -12.94133 -12.91788 -12.61633 -12.59007 -12.29081 -12.17705 -12.12940 -11.99413 -11.88344 -11.59595 -11.49034 -11.11849 -10.48720 -10.22657 -9.98662 -9.38662 -7.74630 -6.62428 -2.56008 -1.40606 -0.80301 -0.19570 0.12538 0.26541 0.39071 0.77112 1.12519 1.14862 1.40901 1.46269 1.53340 1.67907 1.90881 2.15360 2.26152 2.47746 2.59240 2.73600 3.14477 3.22027 3.33066 3.40185 3.46281 3.48970 3.52863 3.61037 3.65929 3.72922 3.79296 3.97025 4.00562 4.04960 4.06706 4.14570 4.16124 4.24455 4.41950 4.49238 4.51477 4.53289 4.57625 4.66264 4.76642 4.91754 4.92858 5.01718 5.16394 5.29084 5.37428 5.41477 5.58551 5.97130 6.15456 6.35775 6.66723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.092 3.908 3 O -0.310 6.310 4 C 0.115 3.885 5 C -0.205 4.205 6 C -0.072 4.072 7 C -0.167 4.167 8 C -0.083 4.083 9 C -0.087 4.087 10 O -0.553 6.553 11 Si 0.992 3.008 12 H -0.254 1.254 13 H -0.277 1.277 14 H -0.248 1.248 15 C -0.136 4.136 16 C 0.477 3.523 17 O -0.510 6.510 18 O -0.349 6.349 19 C 0.176 3.824 20 C -0.133 4.133 21 C -0.118 4.118 22 C 0.012 3.988 23 C 0.030 3.970 24 C -0.381 4.381 25 C 0.783 3.217 26 N -0.912 5.912 27 C -0.016 4.016 28 C 0.008 3.992 29 F 0.100 6.900 30 C -0.052 4.052 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.136 0.864 35 H 0.154 0.846 36 H 0.156 0.844 37 H 0.137 0.863 38 H 0.123 0.877 39 H 0.389 0.611 40 H 0.126 0.874 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.210 0.790 44 H 0.177 0.823 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.498 -1.169 15.761 17.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.035 3.965 3 O -0.224 6.224 4 C 0.071 3.929 5 C -0.224 4.224 6 C -0.090 4.090 7 C -0.185 4.185 8 C -0.083 4.083 9 C -0.196 4.196 10 O -0.360 6.360 11 Si 0.815 3.185 12 H -0.178 1.178 13 H -0.202 1.202 14 H -0.171 1.171 15 C -0.154 4.154 16 C 0.319 3.681 17 O -0.397 6.397 18 O -0.266 6.266 19 C 0.104 3.896 20 C -0.133 4.133 21 C -0.119 4.119 22 C 0.011 3.989 23 C 0.006 3.994 24 C -0.383 4.383 25 C 0.763 3.237 26 N -0.848 5.848 27 C -0.046 4.046 28 C -0.017 4.017 29 F 0.118 6.882 30 C -0.084 4.084 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.153 0.847 35 H 0.172 0.828 36 H 0.174 0.826 37 H 0.154 0.846 38 H 0.140 0.860 39 H 0.238 0.762 40 H 0.144 0.856 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.227 0.773 44 H 0.195 0.805 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.840 -0.509 14.671 15.799 hybrid contribution -0.002 0.173 -1.973 1.980 sum 5.838 -0.336 12.698 13.980 Atomic orbital electron populations 1.22369 0.89675 1.05747 1.05180 1.21858 0.97375 0.82013 0.95242 1.86118 1.81830 1.26010 1.28485 1.19129 0.96818 0.93030 0.83948 1.21603 1.06060 1.02541 0.92177 1.21255 0.95753 0.94046 0.97947 1.21255 1.02250 0.96892 0.98077 1.20227 0.98524 0.97005 0.92548 1.25187 0.84285 0.95798 1.14349 1.86503 1.18198 1.70336 1.60992 0.85084 0.80817 0.79030 0.73552 1.17828 1.20205 1.17128 1.20323 1.02676 0.93703 0.98726 1.23301 0.76516 0.80422 0.87811 1.90744 1.37762 1.67145 1.44027 1.86479 1.72578 1.23545 1.43996 1.19811 1.01153 0.82556 0.86074 1.21418 0.99078 0.92746 1.00064 1.18629 1.01455 0.91453 1.00318 1.15377 1.02731 0.87710 0.93125 1.21898 0.88134 0.90412 0.98966 1.22637 1.15503 0.99157 1.01048 1.84554 0.41032 0.28505 0.69626 1.98250 0.93704 1.85544 1.07284 1.21751 0.91817 1.03287 0.87744 1.20189 1.04237 0.93496 0.83746 1.88084 1.67541 1.83950 1.48637 1.21692 0.93549 0.92513 1.00671 0.91158 0.88814 0.87910 0.84700 0.82819 0.82645 0.84582 0.85970 0.76170 0.85612 0.86402 0.86087 0.77271 0.80517 0.84448 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 209. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.72 9.15 71.98 0.66 1.38 16 2 C 0.09 -0.05 2.75 29.85 0.08 0.03 16 3 O -0.31 -1.66 9.34 -73.37 -0.69 -2.35 16 4 C 0.12 0.41 6.60 22.51 0.15 0.56 16 5 C -0.21 0.23 8.24 22.37 0.18 0.41 16 6 C -0.07 0.15 10.04 22.25 0.22 0.38 16 7 C -0.17 0.10 8.67 22.28 0.19 0.29 16 8 C -0.08 -0.13 5.35 -19.88 -0.11 -0.24 16 9 C -0.09 0.01 2.80 71.24 0.20 0.21 16 10 O -0.55 -0.97 12.83 -148.98 -1.91 -2.88 16 11 Si 0.99 -1.59 25.14 68.60 1.72 0.13 16 12 H -0.25 0.22 7.11 99.48 0.71 0.93 16 13 H -0.28 -0.60 7.11 99.48 0.71 0.11 16 14 H -0.25 0.58 7.04 99.48 0.70 1.28 16 15 C -0.14 -0.62 9.62 22.36 0.22 -0.41 16 16 C 0.48 1.16 7.29 71.23 0.52 1.68 16 17 O -0.51 -4.53 16.26 28.38 0.46 -4.07 16 18 O -0.35 0.18 10.17 -51.50 -0.52 -0.35 16 19 C 0.18 -0.80 5.94 70.18 0.42 -0.38 16 20 C -0.13 0.51 13.74 31.13 0.43 0.94 16 21 C -0.12 0.51 13.23 30.02 0.40 0.91 16 22 C 0.01 -0.08 5.72 -21.45 -0.12 -0.20 16 23 C 0.03 -0.55 9.45 22.80 0.22 -0.33 16 24 C -0.38 8.32 5.72 -21.41 -0.12 8.20 16 25 C 0.78 -28.80 25.12 69.07 1.74 -27.07 16 26 N -0.91 -35.37 23.15 37.02 0.86 -34.52 16 27 C -0.02 0.14 9.72 22.63 0.22 0.36 16 28 C 0.01 0.04 7.27 22.30 0.16 0.20 16 29 F 0.10 2.21 9.85 44.97 0.44 2.65 16 30 C -0.05 -0.08 9.72 22.62 0.22 0.14 16 31 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.09 -0.54 6.91 -2.39 -0.02 -0.55 16 33 H 0.10 -0.68 8.14 -2.39 -0.02 -0.70 16 34 H 0.14 -0.72 6.31 -2.39 -0.02 -0.73 16 35 H 0.15 -0.94 5.43 -2.91 -0.02 -0.95 16 36 H 0.16 -1.12 8.06 -2.91 -0.02 -1.14 16 37 H 0.14 -0.49 4.86 -2.91 -0.01 -0.50 16 38 H 0.12 -0.15 7.96 -2.39 -0.02 -0.17 16 39 H 0.39 -1.92 8.70 -74.06 -0.64 -2.56 16 40 H 0.13 0.77 8.06 -2.91 -0.02 0.74 16 41 H 0.12 -0.79 8.13 -2.39 -0.02 -0.81 16 42 H 0.12 -0.88 8.13 -2.39 -0.02 -0.90 16 43 H 0.21 -5.91 8.06 -2.91 -0.02 -5.93 16 44 H 0.18 -2.06 8.06 -2.91 -0.02 -2.08 16 45 H 0.14 0.64 8.06 -2.92 -0.02 0.62 16 Total: 0.00 -75.27 417.12 7.42 -67.85 By element: Atomic # 1 Polarization: -14.72 SS G_CDS: 1.19 Total: -13.53 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 5.87 Total: -12.94 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.86 Total: -34.52 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -2.66 Total: -9.65 kcal Atomic # 9 Polarization: 2.21 SS G_CDS: 0.44 Total: 2.65 kcal Atomic # 14 Polarization: -1.59 SS G_CDS: 1.72 Total: 0.13 kcal Total: -75.27 7.42 -67.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_2302812_15358960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 349.011 kcal (2) G-P(sol) polarization free energy of solvation -75.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 273.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 281.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.82 seconds