Wall clock time and date at job start Sat Mar 6 2021 08:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42891 * 109.47158 * 2 1 4 4 C 1.35901 * 117.00388 * 275.32484 * 3 2 1 5 5 C 1.38713 * 120.05114 * 5.08592 * 4 3 2 6 6 C 1.38168 * 119.94118 * 179.72350 * 5 4 3 7 7 C 1.50704 * 119.97428 * 180.27018 * 6 5 4 8 8 O 1.42905 * 109.46745 * 65.29872 * 7 6 5 9 9 Si 1.86301 * 109.47294 * 185.29839 * 7 6 5 10 10 C 1.38246 * 120.05728 * 0.57101 * 6 5 4 11 11 C 1.38288 * 120.11043 * 359.67996 * 10 6 5 12 12 C 1.38129 * 120.05382 * 0.04917 * 11 10 6 13 13 C 1.50700 * 109.47186 * 120.00378 * 2 1 3 14 14 O 1.20826 * 119.99897 * 244.99918 * 13 2 1 15 15 O 1.34229 * 120.00000 * 64.99733 * 13 2 1 16 16 C 1.45202 * 116.99696 * 180.02562 * 15 13 2 17 17 C 1.53001 * 109.47163 * 180.02562 * 16 15 13 18 18 H 1.08996 * 109.46817 * 305.00174 * 17 16 15 19 19 C 1.53001 * 109.46995 * 64.99848 * 17 16 15 20 20 C 1.53001 * 109.46995 * 179.97438 * 19 17 16 21 21 C 1.52998 * 109.47365 * 300.00135 * 20 19 17 22 22 H 1.08995 * 109.46788 * 299.99930 * 21 20 19 23 23 O 1.42895 * 109.46924 * 179.97438 * 21 20 19 24 24 C 1.52997 * 109.46836 * 59.99887 * 21 20 19 25 25 C 1.52997 * 109.47445 * 299.99925 * 24 21 20 26 26 H 1.08999 * 109.47148 * 60.00065 * 1 2 3 27 27 H 1.09004 * 109.47135 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47239 * 299.99685 * 1 2 3 29 29 H 1.09001 * 109.46614 * 239.99995 * 2 1 3 30 30 H 1.08001 * 120.02976 * 359.97438 * 5 4 3 31 31 H 1.09007 * 109.47010 * 305.30338 * 7 6 5 32 32 H 0.96699 * 113.99810 * 179.97438 * 8 7 6 33 33 H 1.48498 * 109.99615 * 178.68159 * 9 7 6 34 34 H 1.48503 * 110.00020 * 300.00136 * 9 7 6 35 35 H 1.07997 * 119.94559 * 179.69931 * 10 6 5 36 36 H 1.07999 * 119.97402 * 180.02562 * 11 10 6 37 37 H 1.07996 * 120.02821 * 180.02562 * 12 11 10 38 38 H 1.08996 * 109.47587 * 60.00040 * 16 15 13 39 39 H 1.09002 * 109.46993 * 300.00022 * 16 15 13 40 40 H 1.09003 * 109.47030 * 300.00084 * 19 17 16 41 41 H 1.08995 * 109.47299 * 59.99984 * 19 17 16 42 42 H 1.08998 * 109.46986 * 179.97438 * 20 19 17 43 43 H 1.09006 * 109.46811 * 60.00238 * 20 19 17 44 44 H 0.96700 * 113.99979 * 60.00479 * 23 21 20 45 45 H 1.09003 * 109.47125 * 180.02562 * 24 21 20 46 46 H 1.08995 * 109.47397 * 60.00415 * 24 21 20 47 47 H 1.09005 * 109.47217 * 300.00684 * 25 24 21 48 48 H 1.08999 * 109.47270 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.1061 1.9664 -1.2056 5 6 1.6545 1.3304 -2.3527 6 6 1.7518 1.9644 -3.5764 7 6 1.2557 1.2766 -4.8223 8 8 -0.1609 1.1070 -4.7407 9 14 1.6722 2.3145 -6.3123 10 6 2.3094 3.2266 -3.6600 11 6 2.7652 3.8607 -2.5186 12 6 2.6651 3.2334 -1.2920 13 6 2.0324 -0.7105 1.2304 14 8 2.6507 -0.1003 2.0702 15 8 1.7929 -2.0211 1.3934 16 6 2.3061 -2.6396 2.6027 17 6 1.9383 -4.1247 2.6117 18 1 0.8603 -4.2327 2.4920 19 6 2.6529 -4.8340 1.4597 20 6 2.2856 -6.3193 1.4690 21 6 2.7168 -6.9430 2.7979 22 1 3.7948 -6.8345 2.9173 23 8 2.3732 -8.3300 2.8068 24 6 2.0022 -6.2336 3.9498 25 6 2.3695 -4.7484 3.9406 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.2235 0.3422 -2.2886 31 1 1.7338 0.3012 -4.9136 32 1 -0.5496 0.6701 -5.5108 33 1 1.2165 1.6319 -7.5499 34 1 1.0263 3.6469 -6.1998 35 1 2.3890 3.7185 -4.6181 36 1 3.2000 4.8469 -2.5864 37 1 3.0207 3.7291 -0.4009 38 1 1.8693 -2.1515 3.4740 39 1 3.3906 -2.5340 2.6328 40 1 2.3460 -4.3894 0.5130 41 1 3.7309 -4.7260 1.5793 42 1 2.7944 -6.8245 0.6481 43 1 1.2076 -6.4277 1.3496 44 1 2.7912 -8.8432 2.1018 45 1 2.3097 -6.6776 4.8966 46 1 0.9242 -6.3421 3.8305 47 1 3.4475 -4.6399 4.0599 48 1 1.8607 -4.2432 4.7615 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_2302812_16737258.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:03:44 Heat of formation + Delta-G solvation = -182.087884 kcal Electronic energy + Delta-G solvation = -29249.964205 eV Core-core repulsion = 25043.717567 eV Total energy + Delta-G solvation = -4206.246638 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.170 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.14966 -41.21096 -40.09164 -39.16308 -37.88114 -37.46788 -36.60939 -33.73939 -32.45353 -31.83509 -31.79199 -31.05765 -27.21710 -26.87190 -25.76954 -23.99844 -23.70278 -22.50483 -22.32058 -21.80849 -20.87600 -19.36885 -18.70233 -18.49902 -18.25829 -18.13962 -17.75458 -17.17943 -16.73316 -16.59916 -16.32557 -15.91889 -15.57704 -15.49177 -15.19509 -15.02297 -14.81007 -14.51286 -14.28354 -14.04659 -13.96827 -13.86577 -13.57274 -13.44691 -13.36052 -13.23194 -13.15132 -12.93683 -12.60680 -12.53724 -12.27955 -12.14732 -12.00357 -11.94409 -11.73959 -11.68090 -11.62314 -11.45293 -11.11047 -10.71631 -10.53022 -9.94314 -9.34310 -4.90613 0.19087 0.31657 0.87196 0.93132 1.30022 1.61416 1.95838 2.28169 2.59523 3.15609 3.28033 3.35709 3.53100 3.59301 3.64604 3.68688 3.71022 3.74910 3.88410 4.02035 4.08093 4.13232 4.23208 4.24613 4.30518 4.32784 4.33267 4.40187 4.45678 4.46994 4.49701 4.52796 4.56714 4.66419 4.79431 4.90570 4.93267 4.98741 5.03653 5.06352 5.13847 5.15918 5.17821 5.19373 5.30453 5.32850 5.43043 5.44459 5.67088 6.18807 6.48137 6.58521 6.86095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.094 3.906 3 O -0.311 6.311 4 C 0.112 3.888 5 C -0.189 4.189 6 C -0.045 4.045 7 C -0.086 4.086 8 O -0.556 6.556 9 Si 0.764 3.236 10 C -0.157 4.157 11 C -0.071 4.071 12 C -0.157 4.157 13 C 0.470 3.530 14 O -0.522 6.522 15 O -0.342 6.342 16 C 0.069 3.931 17 C -0.081 4.081 18 H 0.086 0.914 19 C -0.111 4.111 20 C -0.145 4.145 21 C 0.099 3.901 22 H 0.061 0.939 23 O -0.591 6.591 24 C -0.112 4.112 25 C -0.106 4.106 26 H 0.085 0.915 27 H 0.107 0.893 28 H 0.065 0.935 29 H 0.134 0.866 30 H 0.144 0.856 31 H 0.099 0.901 32 H 0.396 0.604 33 H -0.286 1.286 34 H -0.298 1.298 35 H 0.144 0.856 36 H 0.161 0.839 37 H 0.136 0.864 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.393 0.607 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.964 -2.702 -4.876 5.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.037 3.963 3 O -0.226 6.226 4 C 0.068 3.932 5 C -0.207 4.207 6 C -0.045 4.045 7 C -0.195 4.195 8 O -0.366 6.366 9 Si 0.669 3.331 10 C -0.175 4.175 11 C -0.089 4.089 12 C -0.175 4.175 13 C 0.312 3.688 14 O -0.410 6.410 15 O -0.258 6.258 16 C -0.005 4.005 17 C -0.100 4.100 18 H 0.105 0.895 19 C -0.148 4.148 20 C -0.183 4.183 21 C 0.041 3.959 22 H 0.079 0.921 23 O -0.399 6.399 24 C -0.150 4.150 25 C -0.144 4.144 26 H 0.104 0.896 27 H 0.126 0.874 28 H 0.084 0.916 29 H 0.151 0.849 30 H 0.162 0.838 31 H 0.117 0.883 32 H 0.246 0.754 33 H -0.214 1.214 34 H -0.226 1.226 35 H 0.161 0.839 36 H 0.178 0.822 37 H 0.154 0.846 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.243 0.757 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.642 -1.590 -4.000 4.607 hybrid contribution -0.795 -0.770 -0.275 1.140 sum 0.848 -2.360 -4.275 4.956 Atomic orbital electron populations 1.22329 0.90021 1.05822 1.04534 1.21822 0.97164 0.82022 0.95324 1.86121 1.81832 1.26149 1.28482 1.19188 0.97010 0.93452 0.83586 1.21232 1.05526 1.02397 0.91576 1.19302 0.97064 0.94397 0.93782 1.25019 0.83981 1.06558 1.03955 1.86543 1.19758 1.83117 1.47174 0.94018 0.90724 0.75621 0.72703 1.21218 1.01835 0.94678 0.99739 1.21238 0.96802 1.00492 0.90351 1.20757 1.03295 0.93543 0.99914 1.23372 0.76457 0.81349 0.87581 1.90714 1.38286 1.67601 1.44445 1.86431 1.72196 1.22470 1.44729 1.23368 0.99606 0.93416 0.84082 1.21229 1.02108 0.90064 0.96559 0.89520 1.21529 1.00514 0.94342 0.98449 1.22206 1.02267 0.96146 0.97697 1.21918 0.98168 0.80696 0.95124 0.92130 1.86481 1.74973 1.20760 1.57692 1.21445 1.00940 0.94474 0.98113 1.21446 1.02519 0.94257 0.96172 0.89576 0.87449 0.91571 0.84923 0.83799 0.88301 0.75354 1.21367 1.22588 0.83870 0.82154 0.84562 0.90860 0.90825 0.90749 0.91298 0.90490 0.91648 0.75704 0.91299 0.91659 0.90604 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.22 9.15 71.98 0.66 0.88 16 2 C 0.09 0.19 2.75 29.85 0.08 0.28 16 3 O -0.31 -2.39 9.34 -73.40 -0.69 -3.08 16 4 C 0.11 0.60 6.60 22.51 0.15 0.75 16 5 C -0.19 -0.46 7.88 22.37 0.18 -0.28 16 6 C -0.05 -0.07 5.38 -19.88 -0.11 -0.17 16 7 C -0.09 0.19 2.79 71.24 0.20 0.39 16 8 O -0.56 -0.10 12.81 -148.98 -1.91 -2.00 16 9 Si 0.76 -2.45 29.85 68.60 2.05 -0.40 16 10 C -0.16 -0.05 8.67 22.28 0.19 0.14 16 11 C -0.07 -0.01 10.04 22.26 0.22 0.21 16 12 C -0.16 -0.60 9.99 22.37 0.22 -0.37 16 13 C 0.47 2.75 7.29 71.24 0.52 3.27 16 14 O -0.52 -7.10 16.26 28.38 0.46 -6.64 16 15 O -0.34 -0.61 9.76 -51.41 -0.50 -1.11 16 16 C 0.07 0.00 4.84 71.98 0.35 0.34 16 17 C -0.08 0.26 2.44 -10.79 -0.03 0.23 16 18 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 19 C -0.11 0.42 5.10 30.60 0.16 0.58 16 20 C -0.15 0.51 5.54 30.59 0.17 0.68 16 21 C 0.10 -0.15 3.47 30.59 0.11 -0.04 16 22 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 23 O -0.59 -0.80 13.32 -148.98 -1.98 -2.79 16 24 C -0.11 0.12 5.57 30.59 0.17 0.30 16 25 C -0.11 0.40 5.20 30.59 0.16 0.55 16 26 H 0.09 -0.11 6.91 -2.39 -0.02 -0.13 16 27 H 0.11 -0.55 8.14 -2.38 -0.02 -0.57 16 28 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.13 -0.38 6.31 -2.39 -0.02 -0.40 16 30 H 0.14 -0.14 5.43 -2.91 -0.02 -0.16 16 31 H 0.10 -0.65 7.96 -2.38 -0.02 -0.67 16 32 H 0.40 -3.08 8.74 -74.06 -0.65 -3.73 16 33 H -0.29 -0.26 7.11 99.48 0.71 0.45 16 34 H -0.30 -1.23 7.05 99.48 0.70 -0.53 16 35 H 0.14 -0.47 4.86 -2.91 -0.01 -0.48 16 36 H 0.16 -0.86 8.06 -2.91 -0.02 -0.89 16 37 H 0.14 0.37 8.06 -2.91 -0.02 0.35 16 38 H 0.07 0.04 8.13 -2.39 -0.02 0.03 16 39 H 0.07 0.03 8.13 -2.39 -0.02 0.01 16 40 H 0.07 -0.25 7.82 -2.39 -0.02 -0.27 16 41 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 42 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 43 H 0.06 -0.11 8.14 -2.38 -0.02 -0.13 16 44 H 0.39 -2.55 9.08 -74.06 -0.67 -3.23 16 45 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 46 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 47 H 0.08 -0.34 8.14 -2.38 -0.02 -0.36 16 48 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 Total: 0.00 -21.06 387.23 0.52 -20.54 By element: Atomic # 1 Polarization: -11.93 SS G_CDS: -0.31 Total: -12.24 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 3.40 Total: 7.73 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: -4.62 Total: -15.62 kcal Atomic # 14 Polarization: -2.45 SS G_CDS: 2.05 Total: -0.40 kcal Total: -21.06 0.52 -20.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_2302812_16737258.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.548 kcal (2) G-P(sol) polarization free energy of solvation -21.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds