Wall clock time and date at job start Sat Mar 6 2021 08:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00138 * 2 1 4 4 C 1.53006 * 112.84974 * 68.04986 * 3 2 1 5 5 F 1.39896 * 109.46857 * 283.18011 * 4 3 2 6 6 F 1.39901 * 109.46908 * 43.17864 * 4 3 2 7 7 F 1.39896 * 109.47416 * 163.17774 * 4 3 2 8 8 C 1.53779 * 113.61708 * 296.85387 * 3 2 1 9 9 C 1.53778 * 87.08308 * 270.88383 * 8 3 2 10 10 H 1.09004 * 113.61049 * 219.93339 * 9 8 3 11 11 C 1.52995 * 113.61477 * 89.11254 * 9 8 3 12 12 O 1.45203 * 109.46822 * 176.53087 * 11 9 8 13 13 C 1.34236 * 116.99996 * 179.97438 * 12 11 9 14 14 O 1.20831 * 119.99791 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99878 * 179.97438 * 13 12 11 16 16 C 1.53000 * 109.47154 * 65.00601 * 15 13 12 17 17 O 1.42905 * 109.46807 * 185.00196 * 15 13 12 18 18 C 1.35897 * 116.99778 * 155.04366 * 17 15 13 19 19 C 1.38711 * 120.05855 * 4.94312 * 18 17 15 20 20 C 1.38163 * 119.94690 * 179.76651 * 19 18 17 21 21 C 1.50700 * 119.97597 * 180.23265 * 20 19 18 22 22 O 1.42903 * 109.46877 * 300.25085 * 21 20 19 23 23 Si 1.86296 * 109.47419 * 180.25295 * 21 20 19 24 24 C 1.38253 * 120.05371 * 0.48070 * 20 19 18 25 25 C 1.38288 * 120.10942 * 359.76921 * 24 20 19 26 26 C 1.38126 * 120.05598 * 0.02562 * 25 24 20 27 27 C 1.53783 * 87.16897 * 334.52121 * 9 8 3 28 28 H 1.09002 * 109.46935 * 183.48324 * 1 2 3 29 29 H 1.08996 * 109.47380 * 303.48461 * 1 2 3 30 30 H 1.09006 * 109.47055 * 63.48849 * 1 2 3 31 31 H 1.08999 * 113.61643 * 156.32630 * 8 3 2 32 32 H 1.09003 * 113.61168 * 25.43085 * 8 3 2 33 33 H 1.09004 * 109.47528 * 56.53350 * 11 9 8 34 34 H 1.08997 * 109.47718 * 296.52865 * 11 9 8 35 35 H 1.09004 * 109.47185 * 304.99942 * 15 13 12 36 36 H 1.08995 * 109.46962 * 179.97438 * 16 15 13 37 37 H 1.09003 * 109.46460 * 299.99293 * 16 15 13 38 38 H 1.09000 * 109.47129 * 59.99576 * 16 15 13 39 39 H 1.08004 * 120.02583 * 359.97438 * 19 18 17 40 40 H 1.09001 * 109.46936 * 60.24717 * 21 20 19 41 41 H 0.96704 * 114.00137 * 300.00129 * 22 21 20 42 42 H 1.48495 * 110.00244 * 179.97438 * 23 21 20 43 43 H 1.48502 * 109.99856 * 301.31878 * 23 21 20 44 44 H 1.07999 * 119.94258 * 179.74779 * 24 20 19 45 45 H 1.07995 * 119.97022 * 179.97438 * 25 24 20 46 46 H 1.08002 * 120.02385 * 179.97438 * 26 25 24 47 47 H 1.09005 * 113.60751 * 140.02497 * 27 9 8 48 48 H 1.08996 * 113.61782 * 270.92185 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7704 2.0626 1.3078 5 9 0.4566 2.5424 1.3346 6 9 1.9740 1.1999 2.3901 7 9 2.6613 3.1377 1.3944 8 6 1.6794 2.1271 -1.2570 9 6 2.9350 1.5100 -1.8952 10 1 3.5113 2.2146 -2.4948 11 6 2.6676 0.1907 -2.6225 12 8 3.8901 -0.2683 -3.2574 13 6 3.8256 -1.4214 -3.9416 14 8 2.7820 -2.0268 -4.0081 15 6 5.0544 -1.9602 -4.6277 16 6 6.1063 -2.3242 -3.5780 17 8 4.7081 -3.1254 -5.3790 18 6 5.5028 -3.4362 -6.4367 19 6 6.6504 -2.6975 -6.6842 20 6 7.4593 -3.0185 -7.7573 21 6 8.7091 -2.2197 -8.0237 22 8 8.3616 -0.8512 -8.2443 23 14 9.5669 -2.8937 -9.5338 24 6 7.1203 -4.0688 -8.5900 25 6 5.9740 -4.8035 -8.3485 26 6 5.1643 -4.4892 -7.2744 27 6 3.4777 1.3276 -0.4679 28 1 -0.3633 -1.0258 0.0624 29 1 -0.3634 0.5669 0.8571 30 1 -0.3633 0.4588 -0.9197 31 1 1.7507 3.2042 -1.1059 32 1 0.7506 1.8275 -1.7426 33 1 1.8994 0.3430 -3.3807 34 1 2.3276 -0.5569 -1.9059 35 1 5.4578 -1.2018 -5.2988 36 1 6.9949 -2.7143 -4.0743 37 1 6.3704 -1.4353 -3.0050 38 1 5.7028 -3.0825 -2.9071 39 1 6.9133 -1.8741 -6.0365 40 1 9.3760 -2.2912 -7.1645 41 1 7.7686 -0.7121 -8.9953 42 1 10.8007 -2.1140 -9.8075 43 1 9.9050 -4.3252 -9.3293 44 1 7.7517 -4.3156 -9.4307 45 1 5.7111 -5.6232 -9.0006 46 1 4.2689 -5.0631 -7.0865 47 1 4.0000 0.3828 -0.3169 48 1 4.0400 2.1864 -0.1015 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_2302812_17321610.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:48:27 Heat of formation + Delta-G solvation = -272.327023 kcal Electronic energy + Delta-G solvation = -37397.546782 eV Core-core repulsion = 31779.025154 eV Total energy + Delta-G solvation = -5618.521627 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 391.142 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -51.27233 -48.80501 -48.74485 -42.19726 -41.52732 -40.92566 -39.21117 -37.85591 -37.30850 -36.93307 -33.65553 -32.26378 -31.06998 -30.70244 -28.29679 -27.61504 -26.86746 -26.78633 -25.96234 -23.95922 -23.30320 -22.59783 -21.86101 -20.68810 -19.82395 -19.58055 -19.50389 -19.27165 -18.59848 -18.36613 -17.87623 -17.48481 -17.21967 -17.12529 -16.54772 -16.49406 -16.25280 -16.10264 -15.86318 -15.68820 -15.64679 -15.61141 -15.40484 -15.18782 -14.97991 -14.90909 -14.75036 -14.73155 -14.44105 -14.23998 -14.15423 -14.07149 -13.54839 -13.45997 -13.34769 -13.18408 -13.09586 -12.81287 -12.79139 -12.60504 -12.41897 -12.20043 -12.06213 -11.99899 -11.77097 -11.73997 -11.65299 -11.46511 -10.82619 -10.47623 -9.93086 -9.32427 -4.96453 0.20924 0.33097 0.88685 0.92421 1.33497 1.51345 1.66659 1.98745 2.05571 2.27200 2.54390 2.60860 2.65614 2.85482 3.12457 3.27281 3.38348 3.44286 3.53741 3.57539 3.64756 3.66151 3.74275 3.92934 4.07051 4.18135 4.20190 4.21719 4.23371 4.31411 4.34399 4.42029 4.47848 4.49419 4.53508 4.55112 4.59695 4.66231 4.68469 4.75427 4.80752 4.92055 4.94848 5.01904 5.20421 5.21168 5.34600 5.44696 5.67830 5.69316 6.20595 6.49254 6.76926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.349 6.349 3 C 0.029 3.971 4 C 0.434 3.566 5 F -0.185 7.185 6 F -0.189 7.189 7 F -0.174 7.174 8 C -0.135 4.135 9 C -0.091 4.091 10 H 0.127 0.873 11 C 0.074 3.926 12 O -0.341 6.341 13 C 0.470 3.530 14 O -0.521 6.521 15 C 0.094 3.906 16 C -0.171 4.171 17 O -0.312 6.312 18 C 0.112 3.888 19 C -0.189 4.189 20 C -0.083 4.083 21 C -0.074 4.074 22 O -0.553 6.553 23 Si 0.777 3.223 24 C -0.154 4.154 25 C -0.071 4.071 26 C -0.157 4.157 27 C -0.111 4.111 28 H 0.107 0.893 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.130 0.870 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.133 0.867 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.065 0.935 39 H 0.143 0.857 40 H 0.111 0.889 41 H 0.396 0.604 42 H -0.301 1.301 43 H -0.285 1.285 44 H 0.148 0.852 45 H 0.159 0.841 46 H 0.133 0.867 47 H 0.092 0.908 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.136 2.307 -5.049 5.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.267 6.267 3 C -0.013 4.013 4 C 0.379 3.621 5 F -0.166 7.166 6 F -0.170 7.170 7 F -0.155 7.155 8 C -0.172 4.172 9 C -0.109 4.109 10 H 0.145 0.855 11 C 0.001 3.999 12 O -0.257 6.257 13 C 0.312 3.688 14 O -0.409 6.409 15 C 0.037 3.963 16 C -0.228 4.228 17 O -0.227 6.227 18 C 0.068 3.932 19 C -0.208 4.208 20 C -0.083 4.083 21 C -0.184 4.184 22 O -0.361 6.361 23 Si 0.683 3.317 24 C -0.172 4.172 25 C -0.089 4.089 26 C -0.176 4.176 27 C -0.148 4.148 28 H 0.125 0.875 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.148 0.852 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.151 0.849 36 H 0.107 0.893 37 H 0.126 0.874 38 H 0.084 0.916 39 H 0.161 0.839 40 H 0.128 0.872 41 H 0.246 0.754 42 H -0.229 1.229 43 H -0.212 1.212 44 H 0.165 0.835 45 H 0.177 0.823 46 H 0.151 0.849 47 H 0.110 0.890 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.804 1.621 -4.731 5.316 hybrid contribution -0.741 0.160 1.478 1.661 sum 1.062 1.781 -3.252 3.857 Atomic orbital electron populations 1.23266 0.78802 1.04992 1.02012 1.88074 1.22057 1.22741 1.93831 1.24333 1.01218 0.86367 0.89383 1.21484 0.73947 0.78436 0.88190 1.93175 1.37388 1.89116 1.96954 1.93188 1.94652 1.70060 1.59106 1.93173 1.68292 1.57427 1.96653 1.23658 0.99898 1.01632 0.92017 1.22048 0.98078 0.95526 0.95284 0.85471 1.23179 0.83796 0.96358 0.96574 1.86399 1.40214 1.37267 1.61839 1.23393 0.89815 0.79048 0.76541 1.90716 1.32884 1.58894 1.58440 1.21827 0.90637 0.88794 0.95035 1.22340 0.97456 1.04756 0.98219 1.86127 1.52663 1.43374 1.40504 1.19209 0.90582 0.95983 0.87443 1.21211 0.95575 1.02576 1.01388 1.20260 0.96757 0.96440 0.94852 1.25198 0.97391 0.85499 1.10322 1.86465 1.70881 1.22647 1.56091 0.93590 0.79981 0.75769 0.82331 1.21229 0.98617 0.96770 1.00556 1.21253 0.92869 0.99078 0.95662 1.20753 1.02616 0.98313 0.95910 1.23410 0.90600 1.06016 0.94780 0.87485 0.93163 0.91243 0.85165 0.87919 0.90308 0.90191 0.84936 0.89323 0.87420 0.91591 0.83948 0.87173 0.75432 1.22931 1.21228 0.83476 0.82299 0.84859 0.88969 0.85048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.47 113.37 1.19 1.18 16 2 O -0.35 -0.66 8.32 -148.98 -1.24 -1.90 16 3 C 0.03 -0.04 0.85 -10.17 -0.01 -0.04 16 4 C 0.43 0.91 2.57 71.98 0.18 1.09 16 5 F -0.18 -0.52 15.27 44.97 0.69 0.17 16 6 F -0.19 -1.23 17.09 44.97 0.77 -0.46 16 7 F -0.17 -0.24 15.84 44.97 0.71 0.47 16 8 C -0.13 0.83 6.50 31.12 0.20 1.04 16 9 C -0.09 0.51 4.20 -10.27 -0.04 0.47 16 10 H 0.13 -1.12 8.14 -2.38 -0.02 -1.14 16 11 C 0.07 -0.03 5.06 71.98 0.36 0.33 16 12 O -0.34 -0.44 10.21 -51.47 -0.53 -0.96 16 13 C 0.47 2.57 7.29 71.24 0.52 3.09 16 14 O -0.52 -6.89 16.26 28.37 0.46 -6.43 16 15 C 0.09 0.13 2.75 29.85 0.08 0.21 16 16 C -0.17 0.42 9.16 71.98 0.66 1.08 16 17 O -0.31 -2.06 9.34 -73.36 -0.68 -2.75 16 18 C 0.11 0.41 6.60 22.51 0.15 0.56 16 19 C -0.19 -0.08 7.81 22.37 0.17 0.09 16 20 C -0.08 0.11 5.39 -19.88 -0.11 0.01 16 21 C -0.07 0.20 2.82 71.24 0.20 0.40 16 22 O -0.55 1.29 12.76 -148.98 -1.90 -0.61 16 23 Si 0.78 -2.99 29.79 68.60 2.04 -0.94 16 24 C -0.15 0.44 8.67 22.29 0.19 0.63 16 25 C -0.07 0.15 10.04 22.25 0.22 0.38 16 26 C -0.16 -0.33 9.99 22.37 0.22 -0.11 16 27 C -0.11 0.45 6.92 31.21 0.22 0.67 16 28 H 0.11 -0.31 8.14 -2.39 -0.02 -0.33 16 29 H 0.05 -0.03 6.25 -2.39 -0.01 -0.04 16 30 H 0.07 -0.33 6.69 -2.38 -0.02 -0.34 16 31 H 0.13 -1.17 8.08 -2.39 -0.02 -1.19 16 32 H 0.10 -0.75 6.60 -2.39 -0.02 -0.77 16 33 H 0.08 -0.05 8.13 -2.39 -0.02 -0.07 16 34 H 0.08 0.23 6.08 -2.39 -0.01 0.22 16 35 H 0.13 -0.41 6.28 -2.38 -0.01 -0.43 16 36 H 0.09 -0.32 6.95 -2.39 -0.02 -0.34 16 37 H 0.11 -0.65 8.14 -2.39 -0.02 -0.67 16 38 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 39 H 0.14 -0.29 5.45 -2.91 -0.02 -0.30 16 40 H 0.11 -0.20 7.96 -2.39 -0.02 -0.22 16 41 H 0.40 -3.94 8.70 -74.05 -0.64 -4.58 16 42 H -0.30 -1.19 7.11 99.48 0.71 -0.49 16 43 H -0.29 -0.25 7.11 99.48 0.71 0.45 16 44 H 0.15 -1.05 4.87 -2.91 -0.01 -1.06 16 45 H 0.16 -1.16 8.06 -2.91 -0.02 -1.19 16 46 H 0.13 0.22 8.06 -2.91 -0.02 0.19 16 47 H 0.09 -0.22 8.10 -2.38 -0.02 -0.24 16 48 H 0.13 -0.89 7.01 -2.39 -0.02 -0.91 16 Total: 0.00 -20.97 402.01 5.17 -15.81 By element: Atomic # 1 Polarization: -13.89 SS G_CDS: 0.43 Total: -13.46 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 4.42 Total: 11.06 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -3.89 Total: -12.65 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 2.17 Total: 0.18 kcal Atomic # 14 Polarization: -2.99 SS G_CDS: 2.04 Total: -0.94 kcal Total: -20.97 5.17 -15.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_2302812_17321610.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -256.521 kcal (2) G-P(sol) polarization free energy of solvation -20.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -272.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds