Wall clock time and date at job start Sat Mar 6 2021 09:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42902 * 109.47260 * 2 1 4 4 C 1.35905 * 116.99938 * 84.84174 * 3 2 1 5 5 C 1.38705 * 120.05283 * 174.35285 * 4 3 2 6 6 C 1.38174 * 119.94331 * 179.72316 * 5 4 3 7 7 C 1.38247 * 120.05195 * 0.56602 * 6 5 4 8 8 C 1.38286 * 120.11085 * 359.68658 * 7 6 5 9 9 C 1.50697 * 119.97215 * 180.02562 * 8 7 6 10 10 O 1.42904 * 109.47164 * 245.01976 * 9 8 7 11 11 Si 1.86306 * 109.47194 * 5.01864 * 9 8 7 12 12 H 1.48502 * 109.46857 * 300.00443 * 11 9 8 13 13 H 1.48500 * 109.47115 * 59.99785 * 11 9 8 14 14 H 1.48491 * 109.47295 * 180.02562 * 11 9 8 15 15 C 1.38125 * 120.06001 * 0.03877 * 8 7 6 16 16 C 1.50701 * 109.47285 * 239.99820 * 2 1 3 17 17 O 1.20823 * 120.00063 * 120.00055 * 16 2 1 18 18 O 1.34230 * 119.99811 * 300.00528 * 16 2 1 19 19 C 1.45199 * 117.00035 * 180.02562 * 18 16 2 20 20 Si 1.86292 * 109.47285 * 74.99348 * 19 18 16 21 21 C 1.86302 * 109.47358 * 60.00566 * 20 19 18 22 22 C 1.86306 * 109.47189 * 180.02562 * 20 19 18 23 23 C 1.86301 * 109.47328 * 300.00048 * 20 19 18 24 24 H 1.09001 * 109.46660 * 300.00436 * 1 2 3 25 25 H 1.08999 * 109.46610 * 60.00035 * 1 2 3 26 26 H 1.08994 * 109.47016 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46671 * 119.99486 * 2 1 3 28 28 H 1.07999 * 120.03197 * 359.97438 * 5 4 3 29 29 H 1.07999 * 119.97304 * 180.27320 * 6 5 4 30 30 H 1.07997 * 119.94424 * 179.70430 * 7 6 5 31 31 H 1.09004 * 109.47537 * 125.01903 * 9 8 7 32 32 H 0.96705 * 113.99673 * 179.97438 * 10 9 8 33 33 H 1.07996 * 120.03212 * 180.02562 * 15 8 7 34 34 H 1.08995 * 109.47009 * 195.00100 * 19 18 16 35 35 H 1.09001 * 109.46581 * 314.99357 * 19 18 16 36 36 H 1.08995 * 109.46908 * 59.99265 * 21 20 19 37 37 H 1.08993 * 109.47249 * 180.02562 * 21 20 19 38 38 H 1.08997 * 109.46765 * 299.99956 * 21 20 19 39 39 H 1.09001 * 109.47037 * 59.99789 * 22 20 19 40 40 H 1.08990 * 109.47571 * 180.02562 * 22 20 19 41 41 H 1.09009 * 109.46706 * 300.00356 * 22 20 19 42 42 H 1.09005 * 109.47069 * 60.00235 * 23 20 19 43 43 H 1.09002 * 109.46950 * 179.97438 * 23 20 19 44 44 H 1.08998 * 109.47391 * 299.99909 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.1095 1.9653 1.2060 5 6 2.6739 3.2293 1.2929 6 6 2.7723 3.8579 2.5194 7 6 2.3194 3.2231 3.6610 8 6 1.7611 1.9608 3.5777 9 6 1.2679 1.2720 4.8240 10 8 2.0574 0.1061 5.0680 11 14 1.4112 2.4335 6.2736 12 1 2.8318 2.8266 6.4543 13 1 0.5908 3.6451 6.0200 14 1 0.9258 1.7546 7.5018 15 6 1.6553 1.3305 2.3532 16 6 2.0324 -0.7104 -1.2304 17 8 2.7271 -0.1233 -2.0257 18 8 1.7081 -1.9955 -1.4428 19 6 2.2277 -2.6160 -2.6484 20 14 4.0409 -2.9815 -2.4266 21 6 4.2693 -4.1390 -0.9847 22 6 4.7078 -3.7769 -3.9737 23 6 4.9592 -1.3938 -2.1001 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 0.8901 28 1 3.0325 3.7235 0.4020 29 1 3.2077 4.8439 2.5870 30 1 2.4016 3.7141 4.6194 31 1 0.2252 0.9834 4.6913 32 1 1.7957 -0.3881 5.8570 33 1 1.2188 0.3447 2.2886 34 1 1.6904 -3.5449 -2.8395 35 1 2.0941 -1.9388 -3.4920 36 1 3.7321 -5.0678 -1.1758 37 1 5.3302 -4.3525 -0.8547 38 1 3.8793 -3.6732 -0.0797 39 1 4.5742 -3.0995 -4.8171 40 1 5.7685 -3.9913 -3.8439 41 1 4.1705 -4.7059 -4.1652 42 1 4.5691 -0.9280 -1.1950 43 1 6.0200 -1.6078 -1.9699 44 1 4.8256 -0.7167 -2.9437 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_2302812_4858416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 09:54:42 Heat of formation + Delta-G solvation = -147.594499 kcal Electronic energy + Delta-G solvation = -24455.069945 eV Core-core repulsion = 20883.633521 eV Total energy + Delta-G solvation = -3571.436425 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.07964 -41.10521 -39.14691 -37.55815 -37.29483 -33.68212 -32.36459 -31.08873 -29.69187 -28.48051 -28.38580 -28.16796 -26.85164 -25.79048 -23.78156 -22.49451 -21.75133 -19.31961 -18.71728 -18.38476 -18.21386 -17.66913 -17.23104 -16.71466 -16.40121 -15.87899 -15.59378 -15.04548 -14.79653 -14.59224 -14.54835 -14.19255 -14.14342 -14.00182 -13.82034 -13.70576 -13.44335 -13.43420 -13.25547 -13.24610 -13.08725 -13.03537 -12.87330 -12.61776 -12.58980 -12.15380 -12.12527 -11.88026 -11.68231 -11.42435 -10.87468 -10.80344 -10.44061 -10.36138 -9.93678 -9.34870 0.17836 0.29215 0.95207 1.02390 1.17747 1.48173 1.53366 1.54077 1.84600 1.89515 1.93156 2.40188 2.53238 2.59431 3.37654 3.49551 3.61155 3.70998 3.77017 3.89441 4.02016 4.21688 4.24825 4.30746 4.44095 4.53335 4.57346 4.66506 4.67312 4.69110 4.74778 4.78907 4.79960 4.81255 4.85388 4.89493 5.03334 5.16469 5.19801 5.29789 5.41419 5.50423 5.58111 5.60426 5.65149 6.19794 6.59756 6.82122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.088 3.912 3 O -0.309 6.309 4 C 0.114 3.886 5 C -0.158 4.158 6 C -0.073 4.073 7 C -0.171 4.171 8 C -0.047 4.047 9 C -0.084 4.084 10 O -0.561 6.561 11 Si 0.979 3.021 12 H -0.272 1.272 13 H -0.258 1.258 14 H -0.255 1.255 15 C -0.186 4.186 16 C 0.447 3.553 17 O -0.500 6.500 18 O -0.327 6.327 19 C -0.256 4.256 20 Si 1.058 2.942 21 C -0.452 4.452 22 C -0.450 4.450 23 C -0.460 4.460 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.107 0.893 27 H 0.129 0.871 28 H 0.136 0.864 29 H 0.157 0.843 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.400 0.600 33 H 0.150 0.850 34 H 0.140 0.860 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.045 0.955 43 H 0.064 0.936 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.360 -3.553 3.194 5.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.031 3.969 3 O -0.223 6.223 4 C 0.070 3.930 5 C -0.177 4.177 6 C -0.090 4.090 7 C -0.189 4.189 8 C -0.047 4.047 9 C -0.194 4.194 10 O -0.371 6.371 11 Si 0.804 3.196 12 H -0.197 1.197 13 H -0.182 1.182 14 H -0.179 1.179 15 C -0.204 4.204 16 C 0.289 3.711 17 O -0.387 6.387 18 O -0.243 6.243 19 C -0.373 4.373 20 Si 1.250 2.750 21 C -0.560 4.560 22 C -0.559 4.559 23 C -0.564 4.564 24 H 0.110 0.890 25 H 0.085 0.915 26 H 0.125 0.875 27 H 0.146 0.854 28 H 0.154 0.846 29 H 0.175 0.825 30 H 0.150 0.850 31 H 0.119 0.881 32 H 0.250 0.750 33 H 0.167 0.833 34 H 0.158 0.842 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.793 -2.537 2.899 4.758 hybrid contribution -0.110 -0.149 -0.177 0.256 sum -2.904 -2.686 2.722 4.801 Atomic orbital electron populations 1.22360 0.89711 1.05937 1.04784 1.21880 0.97538 0.81981 0.95498 1.86122 1.81842 1.26161 1.28218 1.19184 0.96702 0.93338 0.83786 1.20719 1.03386 0.93827 0.99719 1.21189 0.96863 1.00456 0.90526 1.21210 1.02047 0.95966 0.99632 1.19374 0.97284 0.93992 0.94076 1.24804 0.97915 0.94541 1.02152 1.86462 1.59391 1.39477 1.51726 0.85264 0.79909 0.78256 0.76184 1.19656 1.18192 1.17892 1.21262 1.05970 1.01872 0.91322 1.23382 0.78195 0.81822 0.87685 1.90704 1.34704 1.66924 1.46415 1.86375 1.69520 1.24409 1.43984 1.28730 1.20890 1.01324 0.86399 0.78835 0.62610 0.65399 0.68200 1.26117 1.05199 1.11011 1.13699 1.26061 1.07201 1.07898 1.14706 1.26614 1.08255 1.17536 1.04029 0.89014 0.91478 0.87453 0.85369 0.84619 0.82518 0.84970 0.88087 0.74987 0.83276 0.84218 0.90675 0.89762 0.90768 0.91597 0.91223 0.90481 0.89690 0.93533 0.91650 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.35 9.10 71.98 0.66 1.01 16 2 C 0.09 0.25 2.75 29.85 0.08 0.34 16 3 O -0.31 -2.57 9.33 -73.40 -0.69 -3.25 16 4 C 0.11 0.73 6.60 22.51 0.15 0.88 16 5 C -0.16 -0.84 9.99 22.37 0.22 -0.62 16 6 C -0.07 -0.17 10.04 22.26 0.22 0.05 16 7 C -0.17 -0.46 8.67 22.28 0.19 -0.27 16 8 C -0.05 -0.13 5.38 -19.88 -0.11 -0.23 16 9 C -0.08 0.19 2.79 71.23 0.20 0.39 16 10 O -0.56 0.87 12.81 -148.98 -1.91 -1.04 16 11 Si 0.98 -2.18 25.14 68.60 1.72 -0.45 16 12 H -0.27 -0.46 7.04 99.48 0.70 0.24 16 13 H -0.26 0.22 7.11 99.48 0.71 0.93 16 14 H -0.25 0.69 7.11 99.48 0.71 1.40 16 15 C -0.19 -0.59 7.88 22.37 0.18 -0.42 16 16 C 0.45 2.83 6.12 71.24 0.44 3.26 16 17 O -0.50 -6.16 12.18 28.40 0.35 -5.82 16 18 O -0.33 -0.79 9.82 -51.41 -0.50 -1.29 16 19 C -0.26 0.23 5.40 113.37 0.61 0.84 16 20 Si 1.06 -2.39 12.12 68.60 0.83 -1.55 16 21 C -0.45 1.06 8.65 113.37 0.98 2.04 16 22 C -0.45 1.38 8.65 113.37 0.98 2.36 16 23 C -0.46 -2.61 7.10 113.37 0.81 -1.80 16 24 H 0.09 -0.37 6.90 -2.39 -0.02 -0.39 16 25 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 26 H 0.11 -0.61 8.11 -2.39 -0.02 -0.62 16 27 H 0.13 -0.12 6.32 -2.38 -0.02 -0.13 16 28 H 0.14 0.57 8.06 -2.91 -0.02 0.55 16 29 H 0.16 -0.46 8.06 -2.91 -0.02 -0.49 16 30 H 0.13 0.00 4.86 -2.91 -0.01 -0.02 16 31 H 0.10 -0.72 7.96 -2.39 -0.02 -0.74 16 32 H 0.40 -4.27 8.74 -74.05 -0.65 -4.92 16 33 H 0.15 -0.13 5.43 -2.91 -0.02 -0.15 16 34 H 0.14 -0.91 7.96 -2.39 -0.02 -0.93 16 35 H 0.07 0.08 7.52 -2.39 -0.02 0.06 16 36 H 0.08 -0.38 7.96 -2.39 -0.02 -0.40 16 37 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 38 H 0.06 -0.06 7.96 -2.39 -0.02 -0.08 16 39 H 0.07 -0.15 7.96 -2.39 -0.02 -0.16 16 40 H 0.08 -0.22 7.96 -2.39 -0.02 -0.24 16 41 H 0.08 -0.45 7.96 -2.38 -0.02 -0.47 16 42 H 0.05 0.42 6.28 -2.38 -0.01 0.41 16 43 H 0.06 0.27 7.96 -2.39 -0.02 0.25 16 44 H 0.06 0.53 7.43 -2.39 -0.02 0.51 16 Total: 0.00 -17.68 359.27 6.51 -11.17 By element: Atomic # 1 Polarization: -6.69 SS G_CDS: 1.10 Total: -5.59 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 5.61 Total: 7.84 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -2.75 Total: -11.40 kcal Atomic # 14 Polarization: -4.56 SS G_CDS: 2.56 Total: -2.01 kcal Total: -17.68 6.51 -11.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_2302812_4858416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.427 kcal (2) G-P(sol) polarization free energy of solvation -17.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds