Wall clock time and date at job start Sat Mar 6 2021 06:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.46529 * 2 1 4 4 C 1.35898 * 116.99919 * 84.91055 * 3 2 1 5 5 C 1.38716 * 120.05645 * 174.24668 * 4 3 2 6 6 C 1.38163 * 119.94204 * 179.71875 * 5 4 3 7 7 C 1.38240 * 120.05534 * 0.57608 * 6 5 4 8 8 C 1.38287 * 120.11587 * 359.67566 * 7 6 5 9 9 C 1.50700 * 119.97480 * 180.02562 * 8 7 6 10 10 O 1.42896 * 109.47540 * 245.02757 * 9 8 7 11 11 Si 1.86302 * 109.47113 * 5.03045 * 9 8 7 12 12 H 1.48499 * 109.47296 * 179.97438 * 11 9 8 13 13 H 1.48504 * 109.46942 * 299.99398 * 11 9 8 14 14 H 1.48501 * 109.47475 * 59.99215 * 11 9 8 15 15 C 1.38119 * 120.05202 * 0.04728 * 8 7 6 16 16 C 1.50699 * 109.46897 * 240.00333 * 2 1 3 17 17 O 1.20823 * 119.99869 * 119.72470 * 16 2 1 18 18 O 1.34224 * 120.00007 * 299.99150 * 16 2 1 19 19 C 1.45205 * 116.99902 * 179.72731 * 18 16 2 20 20 C 1.50699 * 109.46724 * 180.02562 * 19 18 16 21 21 C 1.38239 * 120.00351 * 269.72407 * 20 19 18 22 22 C 1.38232 * 120.00078 * 179.76819 * 21 20 19 23 23 C 1.38234 * 120.00061 * 0.51112 * 22 21 20 24 24 Si 1.86800 * 120.00056 * 179.72146 * 23 22 21 25 25 C 1.86295 * 109.47407 * 270.02234 * 24 23 22 26 26 C 1.86296 * 109.47143 * 30.02520 * 24 23 22 27 27 C 1.86308 * 109.46964 * 150.02231 * 24 23 22 28 28 C 1.38237 * 120.00139 * 359.74482 * 23 22 21 29 29 C 1.38234 * 119.99925 * 90.00337 * 20 19 18 30 30 H 1.08998 * 109.47565 * 60.00025 * 1 2 3 31 31 H 1.09004 * 109.47139 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47203 * 299.99731 * 1 2 3 33 33 H 1.08993 * 109.46931 * 119.99666 * 2 1 3 34 34 H 1.07999 * 120.02580 * 359.97438 * 5 4 3 35 35 H 1.08002 * 119.97163 * 180.27499 * 6 5 4 36 36 H 1.08002 * 119.94337 * 179.69826 * 7 6 5 37 37 H 1.09002 * 109.46707 * 125.02329 * 9 8 7 38 38 H 0.96696 * 114.00024 * 180.02562 * 10 9 8 39 39 H 1.08003 * 120.02905 * 179.97438 * 15 8 7 40 40 H 1.08996 * 109.47072 * 300.00370 * 19 18 16 41 41 H 1.08999 * 109.46768 * 60.00611 * 19 18 16 42 42 H 1.08001 * 119.99483 * 0.02562 * 21 20 19 43 43 H 1.07996 * 119.99953 * 180.23541 * 22 21 20 44 44 H 1.09003 * 109.47202 * 59.99369 * 25 24 23 45 45 H 1.09000 * 109.47594 * 179.97438 * 25 24 23 46 46 H 1.09000 * 109.47158 * 300.00600 * 25 24 23 47 47 H 1.09001 * 109.47167 * 59.99476 * 26 24 23 48 48 H 1.09000 * 109.47380 * 179.97438 * 26 24 23 49 49 H 1.09004 * 109.47016 * 300.00205 * 26 24 23 50 50 H 1.08998 * 109.46956 * 60.00426 * 27 24 23 51 51 H 1.09000 * 109.46750 * 179.97438 * 27 24 23 52 52 H 1.09001 * 109.46987 * 300.00304 * 27 24 23 53 53 H 1.07996 * 120.00126 * 179.97438 * 28 23 22 54 54 H 1.07996 * 120.00277 * 359.97438 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 2.1105 1.9648 1.2061 5 6 2.6769 3.2281 1.2932 6 6 2.7765 3.8561 2.5198 7 6 2.3231 3.2217 3.6613 8 6 1.7628 1.9602 3.5779 9 6 1.2690 1.2718 4.8242 10 8 2.0569 0.1047 5.0678 11 14 1.4143 2.4328 6.2740 12 1 0.9272 1.7546 7.5020 13 1 2.8355 2.8237 6.4545 14 1 0.5956 3.6456 6.0209 15 6 1.6557 1.3305 2.3533 16 6 2.0323 -0.7103 -1.2305 17 8 2.7228 -0.1217 -2.0283 18 8 1.7081 -1.9954 -1.4429 19 6 2.2222 -2.6138 -2.6519 20 6 1.7581 -4.0459 -2.7200 21 6 2.5283 -5.0494 -2.1625 22 6 2.1002 -6.3625 -2.2207 23 6 0.9071 -6.6734 -2.8457 24 14 0.3324 -8.4487 -2.9312 25 6 0.9925 -9.2412 -4.4826 26 6 0.9612 -9.3774 -1.4436 27 6 -1.5299 -8.4983 -2.9526 28 6 0.1394 -5.6706 -3.4079 29 6 0.5650 -4.3568 -3.3450 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.0360 3.7219 0.4024 35 1 3.2134 4.8415 2.5876 36 1 2.4063 3.7123 4.6199 37 1 0.2258 0.9848 4.6917 38 1 1.7942 -0.3896 5.8562 39 1 1.2184 0.3450 2.2887 40 1 1.8539 -2.0711 -3.5225 41 1 3.3117 -2.5848 -2.6398 42 1 3.4624 -4.8069 -1.6777 43 1 2.7000 -7.1460 -1.7818 44 1 2.0820 -9.2121 -4.4702 45 1 0.6575 -10.2773 -4.5323 46 1 0.6246 -8.6978 -5.3530 47 1 0.5750 -8.9137 -0.5359 48 1 0.6255 -10.4132 -1.4933 49 1 2.0508 -9.3483 -1.4311 50 1 -1.8978 -7.9550 -3.8230 51 1 -1.8652 -9.5342 -3.0030 52 1 -1.9161 -8.0346 -2.0449 53 1 -0.7925 -5.9136 -3.8966 54 1 -0.0348 -3.5734 -3.7842 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_2302812_9435856.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:20:37 Heat of formation + Delta-G solvation = -133.621759 kcal Electronic energy + Delta-G solvation = -32493.850147 eV Core-core repulsion = 28099.039826 eV Total energy + Delta-G solvation = -4394.810321 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 388.171 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.17839 -41.23071 -40.03781 -39.14459 -37.71684 -37.35424 -33.88522 -32.97221 -32.27229 -31.90800 -31.09604 -29.43800 -28.27854 -28.26055 -27.71584 -26.86207 -25.94077 -23.94501 -23.51055 -22.51812 -22.17950 -21.89151 -19.39711 -18.81151 -18.43791 -18.41113 -17.79224 -17.55825 -17.17349 -16.65138 -16.57047 -16.02981 -15.88451 -15.85735 -15.45527 -14.96494 -14.78074 -14.55531 -14.41083 -14.28006 -14.25864 -14.08563 -14.03994 -13.87263 -13.72583 -13.66915 -13.46082 -13.39087 -13.25264 -13.14856 -13.09755 -13.01311 -12.95187 -12.68685 -12.61963 -12.19488 -12.16239 -12.14763 -11.89628 -11.79411 -11.73387 -11.55433 -10.91584 -10.79254 -10.74400 -10.36939 -9.94436 -9.82881 -9.72400 -9.36346 0.02099 0.17308 0.28775 0.50016 0.82911 1.05294 1.17139 1.47418 1.52679 1.83840 1.92224 2.03871 2.08164 2.30362 2.58612 2.67278 2.90032 3.29279 3.40545 3.53136 3.62291 3.68060 3.73161 3.75321 3.88000 4.01323 4.07906 4.18199 4.22348 4.24190 4.30058 4.43032 4.51717 4.52095 4.55267 4.65182 4.68563 4.85640 4.85957 4.88840 4.90077 4.90994 4.91541 4.91852 4.95823 4.99736 5.07424 5.13997 5.15351 5.29016 5.37817 5.40836 5.54190 5.57041 5.60703 5.63587 5.69214 5.72324 6.09192 6.16673 6.43001 6.81320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.093 3.907 3 O -0.310 6.310 4 C 0.113 3.887 5 C -0.157 4.157 6 C -0.072 4.072 7 C -0.170 4.170 8 C -0.047 4.047 9 C -0.084 4.084 10 O -0.562 6.562 11 Si 0.978 3.022 12 H -0.255 1.255 13 H -0.271 1.271 14 H -0.257 1.257 15 C -0.185 4.185 16 C 0.469 3.531 17 O -0.522 6.522 18 O -0.341 6.341 19 C 0.108 3.892 20 C -0.105 4.105 21 C -0.120 4.120 22 C -0.101 4.101 23 C -0.370 4.370 24 Si 1.129 2.871 25 C -0.464 4.464 26 C -0.463 4.463 27 C -0.462 4.462 28 C -0.101 4.101 29 C -0.118 4.118 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.158 0.842 36 H 0.133 0.867 37 H 0.101 0.899 38 H 0.400 0.600 39 H 0.149 0.851 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.127 0.873 43 H 0.141 0.859 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.074 0.926 49 H 0.071 0.929 50 H 0.072 0.928 51 H 0.074 0.926 52 H 0.069 0.931 53 H 0.143 0.857 54 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.504 -4.282 3.544 7.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.036 3.964 3 O -0.225 6.225 4 C 0.069 3.931 5 C -0.175 4.175 6 C -0.090 4.090 7 C -0.188 4.188 8 C -0.047 4.047 9 C -0.194 4.194 10 O -0.371 6.371 11 Si 0.803 3.197 12 H -0.179 1.179 13 H -0.196 1.196 14 H -0.181 1.181 15 C -0.203 4.203 16 C 0.311 3.689 17 O -0.410 6.410 18 O -0.258 6.258 19 C 0.035 3.965 20 C -0.105 4.105 21 C -0.138 4.138 22 C -0.119 4.119 23 C -0.409 4.409 24 Si 1.316 2.684 25 C -0.571 4.571 26 C -0.570 4.570 27 C -0.569 4.569 28 C -0.119 4.119 29 C -0.136 4.136 30 H 0.087 0.913 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.148 0.852 34 H 0.155 0.845 35 H 0.176 0.824 36 H 0.151 0.849 37 H 0.119 0.881 38 H 0.250 0.750 39 H 0.166 0.834 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.145 0.855 43 H 0.159 0.841 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.093 0.907 49 H 0.091 0.909 50 H 0.091 0.909 51 H 0.093 0.907 52 H 0.088 0.912 53 H 0.160 0.840 54 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.858 -3.227 3.239 5.983 hybrid contribution 0.191 -0.060 -0.199 0.282 sum -3.667 -3.287 3.040 5.788 Atomic orbital electron populations 1.22346 0.89386 1.05855 1.05002 1.21856 0.97654 0.81969 0.94903 1.86119 1.81928 1.26023 1.28388 1.19188 0.96867 0.93400 0.83671 1.20731 1.03241 0.93763 0.99781 1.21192 0.96835 1.00474 0.90477 1.21216 1.01936 0.95935 0.99669 1.19371 0.97313 0.94024 0.94040 1.24806 0.97932 0.94505 1.02181 1.86458 1.59456 1.39393 1.51788 0.85277 0.79944 0.78297 0.76197 1.17882 1.19627 1.18099 1.21248 1.05931 1.01823 0.91331 1.23486 0.77198 0.80872 0.87310 1.90711 1.36214 1.67249 1.46801 1.86531 1.69728 1.24918 1.44576 1.21995 0.99353 0.90280 0.84845 1.19509 0.96944 0.92507 1.01587 1.21380 1.00033 0.93629 0.98750 1.21395 0.96675 0.95972 0.97876 1.28104 0.97635 1.16774 0.98421 0.77147 0.65527 0.59841 0.65892 1.26306 1.06600 1.07716 1.16431 1.26284 1.06630 1.08877 1.15211 1.26272 1.21076 1.04891 1.04683 1.21408 1.00134 0.92165 0.98166 1.21380 0.95163 0.98046 0.99005 0.91257 0.87695 0.88781 0.85228 0.84494 0.82420 0.84941 0.88109 0.74984 0.83369 0.89896 0.90115 0.85496 0.84081 0.91462 0.90664 0.91408 0.91212 0.90657 0.90944 0.90874 0.90660 0.91185 0.83963 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.30 9.10 71.98 0.66 0.96 16 2 C 0.09 0.32 2.75 29.85 0.08 0.40 16 3 O -0.31 -2.67 9.33 -73.32 -0.68 -3.36 16 4 C 0.11 0.72 6.60 22.51 0.15 0.87 16 5 C -0.16 -0.81 9.99 22.37 0.22 -0.59 16 6 C -0.07 -0.15 10.04 22.25 0.22 0.07 16 7 C -0.17 -0.44 8.67 22.28 0.19 -0.25 16 8 C -0.05 -0.13 5.38 -19.88 -0.11 -0.23 16 9 C -0.08 0.18 2.79 71.24 0.20 0.38 16 10 O -0.56 0.74 12.81 -148.98 -1.91 -1.17 16 11 Si 0.98 -2.10 25.14 68.60 1.72 -0.37 16 12 H -0.25 0.67 7.11 99.48 0.71 1.37 16 13 H -0.27 -0.47 7.04 99.48 0.70 0.23 16 14 H -0.26 0.23 7.11 99.48 0.71 0.93 16 15 C -0.18 -0.60 7.88 22.37 0.18 -0.43 16 16 C 0.47 3.78 7.33 71.24 0.52 4.30 16 17 O -0.52 -8.04 16.25 28.41 0.46 -7.58 16 18 O -0.34 -1.87 10.11 -51.36 -0.52 -2.39 16 19 C 0.11 0.48 5.59 71.24 0.40 0.88 16 20 C -0.11 -0.37 5.52 -19.87 -0.11 -0.48 16 21 C -0.12 -0.29 9.70 22.27 0.22 -0.07 16 22 C -0.10 0.00 9.29 22.27 0.21 0.21 16 23 C -0.37 0.56 4.59 22.27 0.10 0.66 16 24 Si 1.13 -7.46 12.32 68.60 0.85 -6.62 16 25 C -0.46 1.94 8.65 113.37 0.98 2.92 16 26 C -0.46 2.37 8.53 113.37 0.97 3.34 16 27 C -0.46 2.47 8.53 113.37 0.97 3.43 16 28 C -0.10 0.04 9.29 22.27 0.21 0.25 16 29 C -0.12 -0.23 9.70 22.27 0.22 -0.01 16 30 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.10 -0.49 8.11 -2.38 -0.02 -0.51 16 32 H 0.09 -0.37 6.90 -2.39 -0.02 -0.39 16 33 H 0.13 -0.03 6.32 -2.39 -0.02 -0.04 16 34 H 0.14 0.54 8.06 -2.91 -0.02 0.51 16 35 H 0.16 -0.51 8.06 -2.91 -0.02 -0.54 16 36 H 0.13 -0.02 4.86 -2.91 -0.01 -0.03 16 37 H 0.10 -0.70 7.96 -2.39 -0.02 -0.72 16 38 H 0.40 -4.18 8.74 -74.06 -0.65 -4.83 16 39 H 0.15 -0.09 5.43 -2.91 -0.02 -0.11 16 40 H 0.08 0.33 8.08 -2.39 -0.02 0.31 16 41 H 0.08 0.35 8.08 -2.39 -0.02 0.33 16 42 H 0.13 0.03 8.06 -2.91 -0.02 0.00 16 43 H 0.14 -0.61 7.43 -2.91 -0.02 -0.63 16 44 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 45 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 46 H 0.07 -0.24 7.96 -2.39 -0.02 -0.25 16 47 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 48 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 49 H 0.07 -0.39 7.69 -2.38 -0.02 -0.41 16 50 H 0.07 -0.42 7.69 -2.39 -0.02 -0.44 16 51 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 52 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 53 H 0.14 -0.69 7.43 -2.91 -0.02 -0.71 16 54 H 0.13 -0.08 8.06 -2.91 -0.02 -0.11 16 Total: 0.00 -20.45 447.95 7.39 -13.06 By element: Atomic # 1 Polarization: -9.19 SS G_CDS: 1.00 Total: -8.19 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 6.47 Total: 16.61 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -2.65 Total: -14.49 kcal Atomic # 14 Polarization: -9.56 SS G_CDS: 2.57 Total: -6.99 kcal Total: -20.45 7.39 -13.06 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_2302812_9435856.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.561 kcal (2) G-P(sol) polarization free energy of solvation -20.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds