Wall clock time and date at job start Sat Mar 6 2021 09:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86297 * 109.47180 * 2 1 4 4 C 1.50704 * 109.46785 * 240.00451 * 2 1 3 5 5 C 1.38245 * 119.97222 * 120.02506 * 4 2 1 6 6 C 1.38284 * 120.11162 * 179.97438 * 5 4 2 7 7 C 1.38121 * 120.05670 * 359.67148 * 6 5 4 8 8 C 1.38758 * 119.94303 * 0.60266 * 7 6 5 9 9 O 1.35904 * 120.05922 * 179.69478 * 8 7 6 10 10 C 1.42903 * 116.99628 * 359.72826 * 9 8 7 11 11 C 1.53000 * 109.46726 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.46912 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00141 * 359.97438 * 12 11 10 14 14 O 1.34226 * 119.99900 * 179.97438 * 12 11 10 15 15 C 1.45203 * 116.99798 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.46837 * 180.02562 * 15 14 12 17 17 H 1.08996 * 112.84765 * 43.80521 * 16 15 14 18 18 C 1.53781 * 113.61087 * 175.00023 * 16 15 14 19 19 C 1.53784 * 87.08010 * 139.98365 * 18 16 15 20 20 H 1.08990 * 113.61585 * 89.11457 * 19 18 16 21 21 O 1.42901 * 113.61398 * 219.93924 * 19 18 16 22 22 C 1.53779 * 113.61653 * 272.49636 * 16 15 14 23 23 C 1.38173 * 119.97170 * 299.99477 * 4 2 1 24 24 H 0.96706 * 114.00018 * 60.00024 * 1 2 3 25 25 H 1.08990 * 109.46978 * 120.00480 * 2 1 3 26 26 H 1.48503 * 110.00183 * 298.68558 * 3 2 1 27 27 H 1.48506 * 109.99888 * 60.00222 * 3 2 1 28 28 H 1.08003 * 119.94344 * 359.97438 * 5 4 2 29 29 H 1.07998 * 119.97585 * 179.97438 * 6 5 4 30 30 H 1.08003 * 120.03435 * 180.31896 * 7 6 5 31 31 H 1.09002 * 109.47382 * 59.99787 * 10 9 8 32 32 H 1.09001 * 109.46938 * 299.99774 * 10 9 8 33 33 H 1.09001 * 109.47194 * 299.99575 * 11 10 9 34 34 H 1.08992 * 109.47399 * 59.99748 * 11 10 9 35 35 H 1.09000 * 109.47246 * 300.00228 * 15 14 12 36 36 H 1.09003 * 109.47398 * 60.00414 * 15 14 12 37 37 H 1.09000 * 113.61762 * 254.52800 * 18 16 15 38 38 H 1.09002 * 113.61489 * 25.43265 * 18 16 15 39 39 H 0.96699 * 113.99837 * 180.02562 * 21 19 18 40 40 H 1.09003 * 113.61160 * 334.56969 * 22 16 15 41 41 H 1.09002 * 113.61474 * 105.46699 * 22 16 15 42 42 H 1.07998 * 120.02728 * 0.05060 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7103 -1.2306 5 6 2.7264 -0.0380 -2.1399 6 6 3.1893 -0.6872 -3.2698 7 6 2.8637 -2.0114 -3.4890 8 6 2.0610 -2.6868 -2.5808 9 8 1.7340 -3.9881 -2.7973 10 6 2.2468 -4.5969 -3.9842 11 6 1.7760 -6.0509 -4.0556 12 6 2.3162 -6.6928 -5.3075 13 8 3.0064 -6.0529 -6.0651 14 8 2.0305 -7.9755 -5.5810 15 6 2.5852 -8.5281 -6.8039 16 6 2.1541 -9.9894 -6.9445 17 1 1.1017 -10.1449 -6.7075 18 6 2.5889 -10.6349 -8.2709 19 6 2.9060 -11.9022 -7.4594 20 1 2.0595 -12.5818 -7.3625 21 8 4.1034 -12.5627 -7.8741 22 6 3.0983 -10.9804 -6.2436 23 6 1.5971 -2.0332 -1.4487 24 1 -0.3933 0.4417 -0.7651 25 1 1.7923 -0.5139 0.8899 26 1 1.5878 2.4586 -1.2242 27 1 1.5615 2.4678 1.2086 28 1 2.9865 0.9959 -1.9676 29 1 3.8100 -0.1598 -3.9789 30 1 3.2296 -2.5196 -4.3690 31 1 3.3363 -4.5677 -3.9660 32 1 1.8833 -4.0544 -4.8569 33 1 2.1391 -6.5937 -3.1829 34 1 0.6867 -6.0797 -4.0740 35 1 2.2203 -7.9582 -7.6583 36 1 3.6731 -8.4718 -6.7674 37 1 1.7727 -10.7645 -8.9816 38 1 3.4687 -10.1694 -8.7153 39 1 4.3079 -13.3607 -7.3676 40 1 4.1173 -10.6094 -6.1338 41 1 2.6934 -11.3888 -5.3176 42 1 0.9756 -2.5579 -0.7382 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_2303654_11354868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 09:20:04 Heat of formation + Delta-G solvation = -151.906050 kcal Electronic energy + Delta-G solvation = -24142.001130 eV Core-core repulsion = 20248.138512 eV Total energy + Delta-G solvation = -3893.862617 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.139 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.78092 -41.22485 -40.35703 -39.22460 -37.71492 -37.33045 -36.05384 -33.62594 -32.47133 -30.99279 -29.68657 -27.09450 -26.87732 -25.78232 -23.69716 -23.54021 -22.32030 -21.63886 -20.67076 -19.46371 -18.73085 -18.58434 -18.01264 -17.96342 -17.28131 -17.03588 -17.00635 -16.88127 -16.49553 -16.17438 -15.57885 -15.35811 -15.28573 -14.89850 -14.47265 -14.43077 -14.07743 -14.02325 -13.64547 -13.58424 -13.29194 -13.02481 -12.91213 -12.84115 -12.52032 -12.42562 -12.24193 -11.95274 -11.91305 -11.77568 -11.61661 -11.56969 -11.32360 -10.85827 -10.65788 -9.92006 -9.26190 -4.94872 0.21143 0.40715 1.05244 1.18725 1.30185 1.61187 1.95947 2.29173 2.67178 3.08788 3.29469 3.35192 3.37860 3.42315 3.58526 3.65082 3.68923 3.79020 3.81097 3.88553 4.02714 4.06231 4.12412 4.15867 4.21230 4.30268 4.35916 4.44919 4.50974 4.53578 4.56413 4.64255 4.65219 4.67316 4.83891 4.97467 4.98351 5.19977 5.25613 5.33439 5.37897 5.44308 5.66955 6.32365 6.39921 6.58548 6.61430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.528 6.528 2 C -0.076 4.076 3 Si 0.689 3.311 4 C -0.080 4.080 5 C -0.153 4.153 6 C -0.073 4.073 7 C -0.202 4.202 8 C 0.131 3.869 9 O -0.313 6.313 10 C 0.071 3.929 11 C -0.115 4.115 12 C 0.470 3.530 13 O -0.507 6.507 14 O -0.352 6.352 15 C 0.079 3.921 16 C -0.112 4.112 17 H 0.108 0.892 18 C -0.121 4.121 19 C 0.076 3.924 20 H 0.086 0.914 21 O -0.560 6.560 22 C -0.165 4.165 23 C -0.124 4.124 24 H 0.377 0.623 25 H 0.121 0.879 26 H -0.260 1.260 27 H -0.257 1.257 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.381 0.619 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.859 -2.109 -0.030 2.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.335 6.335 2 C -0.186 4.186 3 Si 0.590 3.410 4 C -0.081 4.081 5 C -0.171 4.171 6 C -0.091 4.091 7 C -0.221 4.221 8 C 0.086 3.914 9 O -0.227 6.227 10 C -0.005 4.005 11 C -0.153 4.153 12 C 0.313 3.687 13 O -0.395 6.395 14 O -0.268 6.268 15 C 0.006 3.994 16 C -0.130 4.130 17 H 0.126 0.874 18 C -0.158 4.158 19 C 0.017 3.983 20 H 0.103 0.897 21 O -0.365 6.365 22 C -0.202 4.202 23 C -0.143 4.143 24 H 0.224 0.776 25 H 0.138 0.862 26 H -0.185 1.185 27 H -0.182 1.182 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.150 0.850 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.229 0.771 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.846 -1.068 -0.052 1.363 hybrid contribution -0.897 -0.651 -0.507 1.219 sum -0.052 -1.719 -0.559 1.808 Atomic orbital electron populations 1.86607 1.17548 1.79997 1.49318 1.25081 0.84088 1.11108 0.98295 0.94893 0.91734 0.74174 0.80216 1.20085 0.97625 0.93814 0.96568 1.20939 1.00702 1.00059 0.95409 1.20928 0.97852 0.93644 0.96684 1.21389 1.03038 0.96512 1.01134 1.18946 0.94814 0.83022 0.94612 1.85968 1.71117 1.22910 1.42731 1.22436 0.99517 0.91761 0.86762 1.21087 1.04610 0.94549 0.95012 1.23203 0.77852 0.80487 0.87152 1.90721 1.35877 1.63506 1.49403 1.86474 1.69604 1.27197 1.43564 1.23137 0.98769 0.93325 0.84177 1.22382 1.01207 0.91502 0.97912 0.87430 1.23079 1.02273 0.94605 0.95840 1.23281 0.87799 0.92437 0.94763 0.89654 1.86529 1.42935 1.44449 1.62630 1.23799 1.00464 0.97392 0.98584 1.20246 1.03078 0.93971 0.96988 0.77587 0.86164 1.18494 1.18200 0.85346 0.85110 0.85009 0.90641 0.90724 0.86166 0.86201 0.90586 0.90602 0.89980 0.88691 0.77150 0.89028 0.90622 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.80 12.77 -35.23 -0.45 -1.25 16 2 C -0.08 0.00 2.82 36.01 0.10 0.10 16 3 Si 0.69 -0.58 29.79 -169.99 -5.06 -5.65 16 4 C -0.08 -0.06 5.39 -104.64 -0.56 -0.62 16 5 C -0.15 0.01 8.67 -39.56 -0.34 -0.34 16 6 C -0.07 0.00 10.04 -39.61 -0.40 -0.40 16 7 C -0.20 -0.17 9.04 -39.43 -0.36 -0.53 16 8 C 0.13 0.24 6.69 -39.22 -0.26 -0.02 16 9 O -0.31 -0.47 10.14 -19.44 -0.20 -0.66 16 10 C 0.07 -0.02 4.03 37.16 0.15 0.13 16 11 C -0.12 0.18 6.18 -27.88 -0.17 0.01 16 12 C 0.47 0.38 7.96 36.01 0.29 0.66 16 13 O -0.51 -1.80 15.73 -18.75 -0.29 -2.10 16 14 O -0.35 -0.20 10.22 -39.25 -0.40 -0.60 16 15 C 0.08 -0.01 5.30 37.16 0.20 0.18 16 16 C -0.11 0.16 4.02 -89.80 -0.36 -0.20 16 17 H 0.11 -0.22 8.14 -51.93 -0.42 -0.64 16 18 C -0.12 0.14 7.47 -25.92 -0.19 -0.05 16 19 C 0.08 -0.09 5.21 -25.92 -0.14 -0.22 16 20 H 0.09 -0.22 8.14 -51.93 -0.42 -0.64 16 21 O -0.56 -0.16 13.67 -35.23 -0.48 -0.65 16 22 C -0.16 0.22 7.47 -25.92 -0.19 0.03 16 23 C -0.12 -0.22 9.55 -39.43 -0.38 -0.59 16 24 H 0.38 -0.48 8.70 45.56 0.40 -0.08 16 25 H 0.12 -0.09 7.96 -51.93 -0.41 -0.50 16 26 H -0.26 -0.29 7.11 56.52 0.40 0.11 16 27 H -0.26 -0.62 7.11 56.52 0.40 -0.22 16 28 H 0.13 -0.24 4.87 -52.48 -0.26 -0.49 16 29 H 0.13 -0.27 8.06 -52.49 -0.42 -0.69 16 30 H 0.13 -0.04 6.30 -52.48 -0.33 -0.37 16 31 H 0.08 -0.02 7.61 -51.93 -0.40 -0.42 16 32 H 0.07 -0.01 7.63 -51.93 -0.40 -0.41 16 33 H 0.12 -0.35 8.14 -51.93 -0.42 -0.77 16 34 H 0.12 -0.34 8.14 -51.93 -0.42 -0.77 16 35 H 0.08 -0.02 8.13 -51.93 -0.42 -0.44 16 36 H 0.08 0.02 7.84 -51.93 -0.41 -0.39 16 37 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 38 H 0.09 -0.04 8.10 -51.93 -0.42 -0.46 16 39 H 0.38 -1.42 9.12 45.56 0.42 -1.00 16 40 H 0.09 -0.05 7.90 -51.93 -0.41 -0.46 16 41 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 42 H 0.13 0.23 8.06 -52.49 -0.42 -0.20 16 LS Contribution 355.49 15.07 5.36 5.36 Total: 0.00 -8.02 355.49 -9.37 -17.39 By element: Atomic # 1 Polarization: -4.77 SS G_CDS: -5.22 Total: -9.99 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -2.62 Total: -1.85 kcal Atomic # 8 Polarization: -3.43 SS G_CDS: -1.82 Total: -5.26 kcal Atomic # 14 Polarization: -0.58 SS G_CDS: -5.06 Total: -5.65 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -8.02 -9.37 -17.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_2303654_11354868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.514 kcal (2) G-P(sol) polarization free energy of solvation -8.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds