Wall clock time and date at job start Sat Mar 6 2021 09:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86297 * 109.47180 * 2 1 4 4 C 1.50704 * 109.46785 * 240.00451 * 2 1 3 5 5 C 1.38245 * 119.97222 * 120.02506 * 4 2 1 6 6 C 1.38284 * 120.11162 * 179.97438 * 5 4 2 7 7 C 1.38121 * 120.05670 * 359.67148 * 6 5 4 8 8 C 1.38758 * 119.94303 * 0.60266 * 7 6 5 9 9 O 1.35904 * 120.05922 * 179.69478 * 8 7 6 10 10 C 1.42903 * 116.99628 * 359.72826 * 9 8 7 11 11 C 1.53000 * 109.46726 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.46912 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00141 * 359.97438 * 12 11 10 14 14 O 1.34226 * 119.99900 * 179.97438 * 12 11 10 15 15 C 1.45203 * 116.99798 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.46837 * 180.02562 * 15 14 12 17 17 H 1.08996 * 112.84765 * 43.80521 * 16 15 14 18 18 C 1.53781 * 113.61087 * 175.00023 * 16 15 14 19 19 C 1.53784 * 87.08010 * 139.98365 * 18 16 15 20 20 H 1.08990 * 113.61585 * 89.11457 * 19 18 16 21 21 O 1.42901 * 113.61398 * 219.93924 * 19 18 16 22 22 C 1.53779 * 113.61653 * 272.49636 * 16 15 14 23 23 C 1.38173 * 119.97170 * 299.99477 * 4 2 1 24 24 H 0.96706 * 114.00018 * 60.00024 * 1 2 3 25 25 H 1.08990 * 109.46978 * 120.00480 * 2 1 3 26 26 H 1.48503 * 110.00183 * 298.68558 * 3 2 1 27 27 H 1.48506 * 109.99888 * 60.00222 * 3 2 1 28 28 H 1.08003 * 119.94344 * 359.97438 * 5 4 2 29 29 H 1.07998 * 119.97585 * 179.97438 * 6 5 4 30 30 H 1.08003 * 120.03435 * 180.31896 * 7 6 5 31 31 H 1.09002 * 109.47382 * 59.99787 * 10 9 8 32 32 H 1.09001 * 109.46938 * 299.99774 * 10 9 8 33 33 H 1.09001 * 109.47194 * 299.99575 * 11 10 9 34 34 H 1.08992 * 109.47399 * 59.99748 * 11 10 9 35 35 H 1.09000 * 109.47246 * 300.00228 * 15 14 12 36 36 H 1.09003 * 109.47398 * 60.00414 * 15 14 12 37 37 H 1.09000 * 113.61762 * 254.52800 * 18 16 15 38 38 H 1.09002 * 113.61489 * 25.43265 * 18 16 15 39 39 H 0.96699 * 113.99837 * 180.02562 * 21 19 18 40 40 H 1.09003 * 113.61160 * 334.56969 * 22 16 15 41 41 H 1.09002 * 113.61474 * 105.46699 * 22 16 15 42 42 H 1.07998 * 120.02728 * 0.05060 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7103 -1.2306 5 6 2.7264 -0.0380 -2.1399 6 6 3.1893 -0.6872 -3.2698 7 6 2.8637 -2.0114 -3.4890 8 6 2.0610 -2.6868 -2.5808 9 8 1.7340 -3.9881 -2.7973 10 6 2.2468 -4.5969 -3.9842 11 6 1.7760 -6.0509 -4.0556 12 6 2.3162 -6.6928 -5.3075 13 8 3.0064 -6.0529 -6.0651 14 8 2.0305 -7.9755 -5.5810 15 6 2.5852 -8.5281 -6.8039 16 6 2.1541 -9.9894 -6.9445 17 1 1.1017 -10.1449 -6.7075 18 6 2.5889 -10.6349 -8.2709 19 6 2.9060 -11.9022 -7.4594 20 1 2.0595 -12.5818 -7.3625 21 8 4.1034 -12.5627 -7.8741 22 6 3.0983 -10.9804 -6.2436 23 6 1.5971 -2.0332 -1.4487 24 1 -0.3933 0.4417 -0.7651 25 1 1.7923 -0.5139 0.8899 26 1 1.5878 2.4586 -1.2242 27 1 1.5615 2.4678 1.2086 28 1 2.9865 0.9959 -1.9676 29 1 3.8100 -0.1598 -3.9789 30 1 3.2296 -2.5196 -4.3690 31 1 3.3363 -4.5677 -3.9660 32 1 1.8833 -4.0544 -4.8569 33 1 2.1391 -6.5937 -3.1829 34 1 0.6867 -6.0797 -4.0740 35 1 2.2203 -7.9582 -7.6583 36 1 3.6731 -8.4718 -6.7674 37 1 1.7727 -10.7645 -8.9816 38 1 3.4687 -10.1694 -8.7153 39 1 4.3079 -13.3607 -7.3676 40 1 4.1173 -10.6094 -6.1338 41 1 2.6934 -11.3888 -5.3176 42 1 0.9756 -2.5579 -0.7382 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_2303654_11354868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 09:20:03 Heat of formation + Delta-G solvation = -151.030339 kcal Electronic energy + Delta-G solvation = -24141.963156 eV Core-core repulsion = 20248.138512 eV Total energy + Delta-G solvation = -3893.824644 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.83794 -41.25183 -40.28443 -39.25250 -37.78303 -37.38165 -36.01086 -33.60537 -32.49513 -31.01479 -29.66050 -27.10215 -26.77282 -25.78066 -23.70772 -23.48217 -22.35361 -21.64529 -20.57304 -19.49177 -18.72742 -18.58493 -18.03663 -18.00632 -17.28550 -17.05198 -17.01721 -16.91049 -16.40060 -16.19337 -15.59654 -15.33674 -15.27155 -14.88488 -14.48974 -14.38877 -14.13851 -14.04814 -13.66818 -13.50092 -13.29596 -13.00024 -12.92324 -12.79866 -12.45693 -12.42685 -12.21092 -12.01321 -11.89114 -11.79037 -11.65463 -11.59341 -11.23734 -10.76274 -10.68746 -9.95030 -9.30241 -4.90476 0.18070 0.37396 0.99460 1.19298 1.32299 1.62209 1.95577 2.28978 2.64339 3.21434 3.37204 3.39174 3.43406 3.52396 3.62174 3.71206 3.78383 3.82448 3.90941 3.93419 4.06882 4.14416 4.17898 4.20315 4.22645 4.32499 4.39333 4.54438 4.55056 4.58452 4.64901 4.70790 4.72599 4.77089 4.95652 4.96859 5.08872 5.22588 5.25475 5.36255 5.38249 5.42527 5.67506 6.28561 6.46669 6.53217 6.86306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.087 4.087 3 Si 0.776 3.224 4 C -0.082 4.082 5 C -0.156 4.156 6 C -0.075 4.075 7 C -0.210 4.210 8 C 0.116 3.884 9 O -0.322 6.322 10 C 0.071 3.929 11 C -0.108 4.108 12 C 0.473 3.527 13 O -0.539 6.539 14 O -0.352 6.352 15 C 0.076 3.924 16 C -0.104 4.104 17 H 0.119 0.881 18 C -0.125 4.125 19 C 0.074 3.926 20 H 0.103 0.897 21 O -0.583 6.583 22 C -0.163 4.163 23 C -0.140 4.140 24 H 0.386 0.614 25 H 0.126 0.874 26 H -0.282 1.282 27 H -0.303 1.303 28 H 0.148 0.852 29 H 0.153 0.847 30 H 0.139 0.861 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.396 0.604 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.807 -2.202 -0.016 2.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.195 4.195 3 Si 0.680 3.320 4 C -0.082 4.082 5 C -0.173 4.173 6 C -0.093 4.093 7 C -0.228 4.228 8 C 0.071 3.929 9 O -0.236 6.236 10 C -0.005 4.005 11 C -0.145 4.145 12 C 0.317 3.683 13 O -0.429 6.429 14 O -0.268 6.268 15 C 0.003 3.997 16 C -0.122 4.122 17 H 0.137 0.863 18 C -0.163 4.163 19 C 0.016 3.984 20 H 0.121 0.879 21 O -0.392 6.392 22 C -0.201 4.201 23 C -0.159 4.159 24 H 0.236 0.764 25 H 0.144 0.856 26 H -0.208 1.208 27 H -0.231 1.231 28 H 0.165 0.835 29 H 0.171 0.829 30 H 0.157 0.843 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.246 0.754 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.796 -1.202 -0.041 1.442 hybrid contribution -0.896 -0.626 -0.503 1.203 sum -0.100 -1.828 -0.544 1.910 Atomic orbital electron populations 1.86573 1.18460 1.80459 1.50146 1.25346 0.83517 1.12231 0.98406 0.93914 0.90289 0.71370 0.76381 1.20171 0.97683 0.93489 0.96906 1.21182 1.00171 1.00895 0.95088 1.21251 0.97637 0.93393 0.97032 1.21564 1.02969 0.97069 1.01244 1.19122 0.95426 0.83306 0.95042 1.85941 1.71385 1.22965 1.43356 1.22463 0.99409 0.92423 0.86161 1.21100 1.05460 0.93595 0.94302 1.23627 0.77047 0.80293 0.87319 1.90708 1.37452 1.64138 1.50640 1.86478 1.69461 1.27111 1.43766 1.23206 0.98359 0.94195 0.83954 1.22360 1.01709 0.90410 0.97731 0.86310 1.23109 1.02149 0.94827 0.96185 1.23411 0.87928 0.92623 0.94480 0.87912 1.86485 1.43668 1.45528 1.63473 1.23760 0.99881 0.97416 0.99028 1.20322 1.03721 0.94639 0.97216 0.76446 0.85646 1.20813 1.23110 0.83465 0.82892 0.84333 0.90878 0.91036 0.84518 0.84555 0.90752 0.91423 0.89039 0.89932 0.75418 0.90208 0.89781 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.91 12.77 -148.98 -1.90 -3.82 16 2 C -0.09 -0.01 2.82 71.24 0.20 0.19 16 3 Si 0.78 -1.57 29.79 68.60 2.04 0.47 16 4 C -0.08 -0.12 5.39 -19.88 -0.11 -0.22 16 5 C -0.16 0.13 8.67 22.28 0.19 0.33 16 6 C -0.08 0.05 10.04 22.25 0.22 0.28 16 7 C -0.21 -0.38 9.04 22.37 0.20 -0.18 16 8 C 0.12 0.50 6.69 22.51 0.15 0.65 16 9 O -0.32 -1.16 10.14 -92.47 -0.94 -2.09 16 10 C 0.07 0.00 4.03 71.98 0.29 0.29 16 11 C -0.11 0.36 6.18 29.85 0.18 0.55 16 12 C 0.47 0.94 7.96 71.24 0.57 1.51 16 13 O -0.54 -4.39 15.73 21.97 0.35 -4.04 16 14 O -0.35 -0.46 10.22 -51.38 -0.53 -0.98 16 15 C 0.08 0.03 5.30 71.98 0.38 0.41 16 16 C -0.10 0.31 4.02 -10.27 -0.04 0.27 16 17 H 0.12 -0.60 8.14 -2.39 -0.02 -0.62 16 18 C -0.13 0.27 7.47 31.12 0.23 0.50 16 19 C 0.07 -0.19 5.21 31.12 0.16 -0.03 16 20 H 0.10 -0.64 8.14 -2.39 -0.02 -0.66 16 21 O -0.58 -0.42 13.67 -148.98 -2.04 -2.45 16 22 C -0.16 0.44 7.47 31.12 0.23 0.67 16 23 C -0.14 -0.60 9.55 22.37 0.21 -0.39 16 24 H 0.39 -0.82 8.70 -74.05 -0.64 -1.46 16 25 H 0.13 -0.16 7.96 -2.39 -0.02 -0.18 16 26 H -0.28 -0.44 7.11 99.48 0.71 0.27 16 27 H -0.30 -1.72 7.11 99.48 0.71 -1.02 16 28 H 0.15 -0.77 4.87 -2.91 -0.01 -0.79 16 29 H 0.15 -0.86 8.06 -2.91 -0.02 -0.89 16 30 H 0.14 -0.03 6.30 -2.91 -0.02 -0.05 16 31 H 0.07 0.02 7.61 -2.39 -0.02 0.00 16 32 H 0.07 0.03 7.63 -2.39 -0.02 0.01 16 33 H 0.14 -0.89 8.14 -2.39 -0.02 -0.91 16 34 H 0.14 -0.88 8.14 -2.39 -0.02 -0.90 16 35 H 0.07 0.04 8.13 -2.39 -0.02 0.02 16 36 H 0.07 0.13 7.84 -2.39 -0.02 0.11 16 37 H 0.09 -0.39 8.14 -2.39 -0.02 -0.40 16 38 H 0.08 0.03 8.10 -2.39 -0.02 0.01 16 39 H 0.40 -2.94 9.12 -74.06 -0.68 -3.62 16 40 H 0.08 -0.02 7.90 -2.39 -0.02 -0.04 16 41 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 42 H 0.13 0.62 8.06 -2.91 -0.02 0.60 16 Total: 0.00 -18.84 355.49 -0.16 -19.00 By element: Atomic # 1 Polarization: -10.67 SS G_CDS: -0.23 Total: -10.91 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 3.09 Total: 4.82 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -5.06 Total: -13.39 kcal Atomic # 14 Polarization: -1.57 SS G_CDS: 2.04 Total: 0.47 kcal Total: -18.84 -0.16 -19.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_2303654_11354868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.026 kcal (2) G-P(sol) polarization free energy of solvation -18.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds