Wall clock time and date at job start Sat Mar 6 2021 07:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 O 1.42895 * 109.47036 * 240.00558 * 2 1 3 6 6 C 1.42903 * 114.00578 * 59.99501 * 5 2 1 7 7 H 1.09003 * 112.84811 * 341.20179 * 6 5 2 8 8 C 1.53785 * 113.61307 * 112.50146 * 6 5 2 9 9 C 1.53779 * 87.08023 * 139.98524 * 8 6 5 10 10 H 1.09000 * 113.61122 * 89.11548 * 9 8 6 11 11 C 1.52998 * 113.69118 * 220.00675 * 9 8 6 12 12 O 1.45201 * 109.47054 * 272.53617 * 11 9 8 13 13 C 1.34230 * 116.99632 * 179.97438 * 12 11 9 14 14 O 1.20825 * 120.00436 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99874 * 180.02562 * 13 12 11 16 16 C 1.52999 * 109.47283 * 180.02562 * 15 13 12 17 17 O 1.42905 * 109.47032 * 180.02562 * 16 15 13 18 18 C 1.35899 * 116.99783 * 179.97438 * 17 16 15 19 19 C 1.38712 * 120.05845 * 179.97438 * 18 17 16 20 20 C 1.38162 * 119.94664 * 180.02562 * 19 18 17 21 21 C 1.50700 * 119.96859 * 180.02562 * 20 19 18 22 22 O 1.42898 * 109.47153 * 299.99593 * 21 20 19 23 23 Si 1.86303 * 109.46850 * 179.97438 * 21 20 19 24 24 C 1.38242 * 120.05912 * 0.02562 * 20 19 18 25 25 C 1.38296 * 120.10621 * 0.02562 * 24 20 19 26 26 C 1.38124 * 120.05651 * 359.68054 * 25 24 20 27 27 C 1.53771 * 113.61895 * 210.00025 * 6 5 2 28 28 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 31 31 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 32 32 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 34 34 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 35 35 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 37 37 H 1.08998 * 113.61503 * 254.53406 * 8 6 5 38 38 H 1.08992 * 113.61525 * 25.43494 * 8 6 5 39 39 H 1.08996 * 109.47009 * 32.53823 * 11 9 8 40 40 H 1.09000 * 109.46978 * 152.53148 * 11 9 8 41 41 H 1.09010 * 109.47204 * 300.00083 * 15 13 12 42 42 H 1.09001 * 109.47586 * 59.99990 * 15 13 12 43 43 H 1.09001 * 109.46916 * 299.99371 * 16 15 13 44 44 H 1.09000 * 109.47436 * 60.00004 * 16 15 13 45 45 H 1.08007 * 120.02488 * 359.97438 * 19 18 17 46 46 H 1.08995 * 109.47542 * 60.00172 * 21 20 19 47 47 H 0.96700 * 114.00394 * 300.00083 * 22 21 20 48 48 H 1.48504 * 110.00163 * 58.68217 * 23 21 20 49 49 H 1.48506 * 110.00093 * 179.97438 * 23 21 20 50 50 H 1.07991 * 119.94910 * 180.02562 * 24 20 19 51 51 H 1.08001 * 119.96919 * 179.97438 * 25 24 20 52 52 H 1.08001 * 120.02776 * 180.32259 * 26 25 24 53 53 H 1.09002 * 113.61586 * 334.56396 * 27 6 5 54 54 H 1.09001 * 113.61839 * 105.38574 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 2.0064 -0.6735 -1.1668 6 6 1.5847 -0.0772 -2.3951 7 1 0.7236 0.5798 -2.2729 8 6 2.7334 0.5530 -3.2002 9 6 2.0562 -0.0126 -4.4597 10 1 1.3246 0.6630 -4.9028 11 6 3.0404 -0.5782 -5.4855 12 8 3.4818 0.4853 -6.3701 13 6 4.3550 0.1530 -7.3340 14 8 4.7374 -0.9886 -7.4354 15 6 4.8583 1.2039 -8.2896 16 6 5.8334 0.5665 -9.2813 17 8 6.3111 1.5632 -10.1871 18 6 7.1933 1.1599 -11.1390 19 6 7.6972 2.0749 -12.0516 20 6 8.5935 1.6623 -13.0187 21 6 9.1418 2.6561 -14.0101 22 8 8.0657 3.2267 -14.7573 23 14 10.3152 1.7922 -15.1710 24 6 8.9878 0.3386 -13.0777 25 6 8.4861 -0.5758 -12.1696 26 6 7.5944 -0.1671 -11.1972 27 6 1.4333 -1.0832 -3.5482 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 -1.7490 1.2492 35 1 3.1301 -0.7209 1.2493 36 1 1.6767 -0.2075 2.1392 37 1 2.7462 1.6423 -3.1632 38 1 3.7071 0.1100 -2.9917 39 1 3.9014 -1.0012 -4.9680 40 1 2.5492 -1.3564 -6.0696 41 1 4.0168 1.6337 -8.8333 42 1 5.3686 1.9886 -7.7310 43 1 6.6750 0.1366 -8.7380 44 1 5.3227 -0.2179 -9.8400 45 1 7.3886 3.1090 -12.0067 46 1 9.6731 3.4450 -13.4778 47 1 7.5480 2.5809 -15.2573 48 1 9.6114 0.6932 -15.8797 49 1 10.8624 2.7614 -16.1542 50 1 9.6888 0.0181 -13.8341 51 1 8.7953 -1.6095 -12.2180 52 1 7.2069 -0.8806 -10.4850 53 1 2.0517 -1.9736 -3.4349 54 1 0.3965 -1.3160 -3.7913 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_2303654_14598394.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:30:27 Heat of formation + Delta-G solvation = -149.427631 kcal Electronic energy + Delta-G solvation = -31645.482600 eV Core-core repulsion = 27129.576979 eV Total energy + Delta-G solvation = -4515.905621 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.201 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.83679 -41.26421 -40.80124 -39.27610 -38.60569 -37.49981 -37.32534 -33.94442 -33.57170 -32.49318 -31.01211 -29.75645 -28.35713 -28.31855 -27.09443 -26.65397 -25.77381 -23.72342 -23.63932 -22.36110 -21.63657 -20.87012 -20.59267 -19.48621 -18.67658 -18.13051 -18.02486 -17.76926 -17.27663 -17.07030 -17.03915 -16.91786 -16.47753 -16.19641 -15.93898 -15.77641 -15.49922 -15.00170 -14.90259 -14.60845 -14.46975 -14.31695 -14.21338 -14.13327 -13.86046 -13.49239 -13.36543 -13.28441 -13.15435 -13.02278 -12.96597 -12.89893 -12.79666 -12.66224 -12.44090 -12.43272 -12.21820 -12.01302 -11.94227 -11.89666 -11.81061 -11.59037 -11.56591 -11.35013 -11.18787 -10.68493 -10.37019 -9.94833 -9.29957 -4.90289 0.18347 0.37610 1.00679 1.20290 1.32699 1.62433 1.95838 2.29171 2.64572 2.72676 3.34729 3.39528 3.44632 3.52954 3.62115 3.71494 3.75122 3.78925 3.82352 3.88355 3.92423 3.97771 4.07168 4.07710 4.11250 4.18521 4.20518 4.22917 4.32476 4.40452 4.48712 4.54699 4.55586 4.59415 4.62200 4.67270 4.71037 4.75932 4.76170 4.78149 4.83902 4.90961 4.93683 4.97021 4.99869 5.11198 5.15025 5.23270 5.26024 5.32800 5.33087 5.36619 5.39648 5.42728 5.67775 6.28899 6.41396 6.46971 6.54644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.098 3.902 3 C -0.174 4.174 4 C -0.140 4.140 5 O -0.382 6.382 6 C 0.059 3.941 7 H 0.104 0.896 8 C -0.149 4.149 9 C -0.102 4.102 10 H 0.117 0.883 11 C 0.078 3.922 12 O -0.352 6.352 13 C 0.473 3.527 14 O -0.539 6.539 15 C -0.108 4.108 16 C 0.071 3.929 17 O -0.322 6.322 18 C 0.116 3.884 19 C -0.140 4.140 20 C -0.082 4.082 21 C -0.087 4.087 22 O -0.548 6.548 23 Si 0.775 3.225 24 C -0.156 4.156 25 C -0.075 4.075 26 C -0.210 4.210 27 C -0.126 4.126 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.386 0.614 48 H -0.281 1.281 49 H -0.303 1.303 50 H 0.148 0.852 51 H 0.153 0.847 52 H 0.139 0.861 53 H 0.085 0.915 54 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.087 0.090 2.774 2.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.060 3.940 3 C -0.231 4.231 4 C -0.197 4.197 5 O -0.302 6.302 6 C 0.002 3.998 7 H 0.122 0.878 8 C -0.186 4.186 9 C -0.120 4.120 10 H 0.135 0.865 11 C 0.004 3.996 12 O -0.268 6.268 13 C 0.317 3.683 14 O -0.429 6.429 15 C -0.145 4.145 16 C -0.004 4.004 17 O -0.237 6.237 18 C 0.071 3.929 19 C -0.159 4.159 20 C -0.082 4.082 21 C -0.195 4.195 22 O -0.356 6.356 23 Si 0.680 3.320 24 C -0.173 4.173 25 C -0.093 4.093 26 C -0.229 4.229 27 C -0.163 4.163 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.146 0.854 46 H 0.143 0.857 47 H 0.236 0.764 48 H -0.208 1.208 49 H -0.231 1.231 50 H 0.165 0.835 51 H 0.171 0.829 52 H 0.157 0.843 53 H 0.104 0.896 54 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.578 0.093 2.304 2.377 hybrid contribution -1.298 -0.155 -0.215 1.324 sum -1.876 -0.063 2.088 2.808 Atomic orbital electron populations 1.22453 0.94896 1.02787 1.03293 1.21674 0.93734 0.92482 0.86158 1.22442 1.01772 0.95725 1.03164 1.21801 1.01588 1.00807 0.95550 1.88017 1.74253 1.54312 1.13624 1.23680 0.97332 0.95851 0.82966 0.87810 1.23602 0.98954 1.01399 0.94670 1.22329 0.97734 0.99445 0.92532 0.86478 1.23186 0.97869 0.88217 0.90279 1.86479 1.56717 1.42447 1.41191 1.23610 0.75730 0.88943 0.80000 1.90707 1.56946 1.23342 1.71918 1.21101 1.01656 0.96702 0.95033 1.22461 0.97666 0.89896 0.90413 1.85940 1.57846 1.38106 1.41772 1.19119 0.90764 0.93369 0.89614 1.20321 1.00382 0.99653 0.95562 1.20164 0.96838 0.95008 0.96210 1.25345 0.95176 1.01256 0.97723 1.86572 1.45484 1.38589 1.64995 0.93923 0.82812 0.76529 0.78731 1.21183 1.02287 0.92426 1.01453 1.21255 0.94436 1.00912 0.92707 1.21564 1.03315 0.94866 1.03122 1.23224 1.02380 0.97501 0.93239 0.91672 0.92228 0.90435 0.90600 0.92505 0.91899 0.92334 0.92480 0.89735 0.90271 0.90298 0.91416 0.90683 0.84570 0.84579 0.90900 0.91002 0.85436 0.85664 0.76445 1.20764 1.23098 0.83464 0.82893 0.84332 0.89634 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.40 8.38 71.98 0.60 1.01 16 2 C 0.10 0.00 1.11 -10.79 -0.01 -0.01 16 3 C -0.17 0.30 8.38 71.98 0.60 0.91 16 4 C -0.14 0.06 8.84 71.98 0.64 0.69 16 5 O -0.38 -1.32 10.00 -148.98 -1.49 -2.81 16 6 C 0.06 -0.05 2.82 31.12 0.09 0.04 16 7 H 0.10 -0.35 5.54 -2.39 -0.01 -0.36 16 8 C -0.15 0.16 7.47 31.12 0.23 0.39 16 9 C -0.10 0.25 4.02 -10.27 -0.04 0.21 16 10 H 0.12 -0.52 8.14 -2.39 -0.02 -0.54 16 11 C 0.08 0.04 5.31 71.98 0.38 0.43 16 12 O -0.35 -0.56 10.22 -51.42 -0.53 -1.08 16 13 C 0.47 1.06 7.96 71.24 0.57 1.62 16 14 O -0.54 -4.47 15.73 21.97 0.35 -4.13 16 15 C -0.11 0.33 6.18 29.85 0.18 0.52 16 16 C 0.07 0.01 4.03 71.98 0.29 0.30 16 17 O -0.32 -1.22 10.14 -92.41 -0.94 -2.16 16 18 C 0.12 0.52 6.69 22.51 0.15 0.67 16 19 C -0.14 -0.62 9.55 22.36 0.21 -0.41 16 20 C -0.08 -0.13 5.39 -19.88 -0.11 -0.23 16 21 C -0.09 -0.02 2.82 71.24 0.20 0.18 16 22 O -0.55 -1.96 12.77 -148.98 -1.90 -3.87 16 23 Si 0.78 -1.51 29.79 68.60 2.04 0.53 16 24 C -0.16 0.12 8.67 22.28 0.19 0.31 16 25 C -0.08 0.04 10.04 22.26 0.22 0.27 16 26 C -0.21 -0.41 9.04 22.37 0.20 -0.21 16 27 C -0.13 0.25 7.47 31.12 0.23 0.49 16 28 H 0.06 -0.23 6.24 -2.39 -0.01 -0.24 16 29 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 31 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 32 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 33 H 0.06 -0.16 7.02 -2.39 -0.02 -0.18 16 34 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 37 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 38 H 0.08 0.12 7.90 -2.39 -0.02 0.10 16 39 H 0.07 0.15 7.84 -2.39 -0.02 0.13 16 40 H 0.07 0.04 8.13 -2.39 -0.02 0.02 16 41 H 0.14 -0.85 8.14 -2.38 -0.02 -0.86 16 42 H 0.14 -0.83 8.14 -2.39 -0.02 -0.85 16 43 H 0.07 0.04 7.61 -2.39 -0.02 0.02 16 44 H 0.07 0.04 7.63 -2.39 -0.02 0.02 16 45 H 0.13 0.64 8.06 -2.91 -0.02 0.62 16 46 H 0.13 -0.14 7.96 -2.39 -0.02 -0.16 16 47 H 0.39 -0.79 8.70 -74.06 -0.64 -1.43 16 48 H -0.28 -0.45 7.11 99.48 0.71 0.26 16 49 H -0.30 -1.74 7.11 99.48 0.71 -1.03 16 50 H 0.15 -0.76 4.87 -2.92 -0.01 -0.77 16 51 H 0.15 -0.84 8.06 -2.91 -0.02 -0.87 16 52 H 0.14 -0.01 6.30 -2.91 -0.02 -0.03 16 53 H 0.09 0.00 8.10 -2.39 -0.02 -0.02 16 54 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 Total: 0.00 -16.77 434.69 2.66 -14.11 By element: Atomic # 1 Polarization: -8.04 SS G_CDS: 0.28 Total: -7.76 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 4.84 Total: 7.17 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -4.51 Total: -14.05 kcal Atomic # 14 Polarization: -1.51 SS G_CDS: 2.04 Total: 0.53 kcal Total: -16.77 2.66 -14.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_2303654_14598394.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.316 kcal (2) G-P(sol) polarization free energy of solvation -16.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds