Wall clock time and date at job start Sat Mar 6 2021 04:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86292 * 109.47292 * 2 1 4 4 C 1.50698 * 109.47141 * 120.00195 * 2 1 3 5 5 C 1.38241 * 119.97319 * 245.01735 * 4 2 1 6 6 C 1.38283 * 120.11364 * 179.97438 * 5 4 2 7 7 C 1.38123 * 120.05492 * 359.68420 * 6 5 4 8 8 C 1.38749 * 119.94261 * 0.59449 * 7 6 5 9 9 O 1.35907 * 120.05551 * 179.70113 * 8 7 6 10 10 C 1.42902 * 116.99957 * 359.72469 * 9 8 7 11 11 C 1.52996 * 109.46938 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47298 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99655 * 359.97438 * 12 11 10 14 14 O 1.34222 * 120.00432 * 180.27351 * 12 11 10 15 15 C 1.45201 * 117.00137 * 179.71953 * 14 12 11 16 16 C 1.53006 * 109.46884 * 179.97438 * 15 14 12 17 17 H 1.09004 * 109.47486 * 304.99771 * 16 15 14 18 18 C 1.53001 * 109.47262 * 65.00334 * 16 15 14 19 19 C 1.53000 * 109.47133 * 179.97438 * 18 16 15 20 20 C 1.52994 * 109.47245 * 299.99797 * 19 18 16 21 21 H 1.08997 * 109.47462 * 300.00131 * 20 19 18 22 22 O 1.42904 * 109.47219 * 179.97438 * 20 19 18 23 23 C 1.53001 * 109.46889 * 60.00054 * 20 19 18 24 24 C 1.52998 * 109.47355 * 299.99511 * 23 20 19 25 25 C 1.38167 * 119.97416 * 65.00218 * 4 2 1 26 26 H 0.96693 * 113.99784 * 60.00142 * 1 2 3 27 27 H 1.09004 * 109.47085 * 240.00201 * 2 1 3 28 28 H 1.48503 * 110.00081 * 60.00141 * 3 2 1 29 29 H 1.48497 * 110.00312 * 181.31790 * 3 2 1 30 30 H 1.07998 * 119.94243 * 359.97438 * 5 4 2 31 31 H 1.08007 * 119.97698 * 179.97438 * 6 5 4 32 32 H 1.08009 * 120.02962 * 180.31955 * 7 6 5 33 33 H 1.08994 * 109.46950 * 60.00216 * 10 9 8 34 34 H 1.09006 * 109.46891 * 299.99999 * 10 9 8 35 35 H 1.09000 * 109.47764 * 59.99713 * 11 10 9 36 36 H 1.09006 * 109.46938 * 299.99491 * 11 10 9 37 37 H 1.08997 * 109.47380 * 299.99656 * 15 14 12 38 38 H 1.08997 * 109.47403 * 60.00337 * 15 14 12 39 39 H 1.09001 * 109.46872 * 300.00305 * 18 16 15 40 40 H 1.08997 * 109.47006 * 59.99929 * 18 16 15 41 41 H 1.08995 * 109.46711 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.46998 * 60.00212 * 19 18 16 43 43 H 0.96701 * 113.99547 * 60.00108 * 22 20 19 44 44 H 1.09007 * 109.47061 * 179.97438 * 23 20 19 45 45 H 1.09004 * 109.47329 * 60.00385 * 23 20 19 46 46 H 1.08996 * 109.47756 * 300.00380 * 24 23 20 47 47 H 1.09004 * 109.47211 * 179.97438 * 24 23 20 48 48 H 1.07999 * 120.02421 * 0.03745 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6385 -0.0117 2.1911 6 6 3.1003 -0.6606 3.3215 7 6 2.8504 -2.0077 3.4965 8 6 2.1460 -2.7126 2.5311 9 8 1.9041 -4.0395 2.6981 10 6 2.4096 -4.6462 3.8891 11 6 2.0424 -6.1314 3.9002 12 6 2.5748 -6.7711 5.1564 13 8 3.1858 -6.1073 5.9602 14 8 2.3756 -8.0796 5.3797 15 6 2.9219 -8.6295 6.6075 16 6 2.5964 -10.1225 6.6867 17 1 1.5204 -10.2655 6.5874 18 6 3.3157 -10.8620 5.5568 19 6 2.9906 -12.3550 5.6365 20 6 3.4566 -12.9071 6.9850 21 1 4.5326 -12.7638 7.0842 22 8 3.1525 -14.3014 7.0596 23 6 2.7374 -12.1676 8.1149 24 6 3.0625 -10.6747 8.0354 25 6 1.6847 -2.0596 1.3976 26 1 -0.3933 0.4417 -0.7650 27 1 1.7924 -0.5138 -0.8900 28 1 1.5616 2.4678 1.2085 29 1 3.5347 1.7702 -0.0321 30 1 2.8305 1.0428 2.0585 31 1 3.6529 -0.1126 4.0705 32 1 3.2069 -2.5130 4.3821 33 1 1.9727 -4.1570 4.7596 34 1 3.4941 -4.5401 3.9188 35 1 2.4795 -6.6204 3.0296 36 1 0.9579 -6.2378 3.8703 37 1 4.0031 -8.4921 6.6177 38 1 2.4823 -8.1164 7.4627 39 1 2.9840 -10.4682 4.5960 40 1 4.3916 -10.7190 5.6562 41 1 3.5027 -12.8817 4.8312 42 1 1.9147 -12.4983 5.5373 43 1 3.5755 -14.8336 6.3719 44 1 3.0691 -12.5613 9.0758 45 1 1.6614 -12.3110 8.0159 46 1 4.1384 -10.5312 8.1345 47 1 2.5497 -10.1478 8.8401 48 1 1.1325 -2.6051 0.6467 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_2303654_16737258.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 04:38:44 Heat of formation + Delta-G solvation = -191.690131 kcal Electronic energy + Delta-G solvation = -28024.644272 eV Core-core repulsion = 23817.981249 eV Total energy + Delta-G solvation = -4206.663023 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.170 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.84999 -41.32496 -40.10621 -39.22111 -37.94897 -37.33604 -36.60048 -33.68131 -32.71432 -31.96219 -31.84587 -31.01787 -27.43369 -26.80782 -25.37902 -23.85333 -23.83088 -22.53894 -22.14292 -21.60776 -20.87416 -19.37359 -18.59427 -18.40731 -18.21326 -18.05503 -17.66637 -17.23687 -17.16529 -17.07308 -16.42867 -15.89548 -15.56608 -15.43435 -15.36715 -14.91270 -14.66399 -14.62204 -14.55859 -14.22466 -14.19391 -13.90489 -13.65575 -13.49832 -13.23886 -13.14186 -13.09250 -12.93116 -12.58624 -12.37993 -12.20748 -12.16298 -12.00924 -11.95344 -11.82483 -11.75292 -11.66937 -11.53018 -11.12072 -10.73055 -10.39549 -10.02722 -9.44401 -4.94111 0.04112 0.20420 0.99488 1.17398 1.30890 1.65008 1.97181 2.22768 2.48021 3.18743 3.34361 3.37961 3.57023 3.60532 3.68699 3.71484 3.75322 3.78122 3.81812 3.88103 4.01989 4.10567 4.12203 4.13537 4.20420 4.25449 4.32486 4.34701 4.37233 4.45116 4.46039 4.50935 4.52542 4.56948 4.65121 4.78519 4.82708 4.93327 5.02984 5.05458 5.06808 5.12824 5.15195 5.18063 5.26863 5.27155 5.30570 5.42809 5.51006 6.17602 6.53567 6.84363 6.90023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.083 4.083 3 Si 0.782 3.218 4 C -0.052 4.052 5 C -0.180 4.180 6 C -0.077 4.077 7 C -0.209 4.209 8 C 0.124 3.876 9 O -0.317 6.317 10 C 0.068 3.932 11 C -0.107 4.107 12 C 0.474 3.526 13 O -0.539 6.539 14 O -0.351 6.351 15 C 0.069 3.931 16 C -0.083 4.083 17 H 0.083 0.917 18 C -0.110 4.110 19 C -0.146 4.146 20 C 0.100 3.900 21 H 0.061 0.939 22 O -0.591 6.591 23 C -0.113 4.113 24 C -0.106 4.106 25 C -0.135 4.135 26 H 0.405 0.595 27 H 0.097 0.903 28 H -0.297 1.297 29 H -0.288 1.288 30 H 0.121 0.879 31 H 0.149 0.851 32 H 0.146 0.854 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.393 0.607 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.478 -0.277 -4.489 4.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.192 4.192 3 Si 0.688 3.312 4 C -0.052 4.052 5 C -0.198 4.198 6 C -0.095 4.095 7 C -0.228 4.228 8 C 0.078 3.922 9 O -0.230 6.230 10 C -0.007 4.007 11 C -0.145 4.145 12 C 0.318 3.682 13 O -0.429 6.429 14 O -0.268 6.268 15 C -0.004 4.004 16 C -0.102 4.102 17 H 0.102 0.898 18 C -0.147 4.147 19 C -0.184 4.184 20 C 0.041 3.959 21 H 0.079 0.921 22 O -0.399 6.399 23 C -0.150 4.150 24 C -0.143 4.143 25 C -0.153 4.153 26 H 0.256 0.744 27 H 0.115 0.885 28 H -0.225 1.225 29 H -0.216 1.216 30 H 0.138 0.862 31 H 0.167 0.833 32 H 0.163 0.837 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.243 0.757 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.099 0.901 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.774 0.202 -2.881 2.990 hybrid contribution 0.638 -0.624 0.333 0.952 sum 1.411 -0.422 -2.548 2.943 Atomic orbital electron populations 1.86449 1.17003 1.82473 1.51440 1.24907 0.86078 1.11318 0.96896 0.94381 0.77239 0.75035 0.84532 1.19519 0.96760 0.93266 0.95694 1.21018 1.03206 0.99468 0.96072 1.21167 0.97347 0.94009 0.96935 1.21544 1.04338 0.95990 1.00882 1.19096 0.95345 0.82944 0.94775 1.85948 1.74557 1.19971 1.42573 1.22508 0.99815 0.92398 0.85960 1.21091 1.06069 0.92839 0.94453 1.23560 0.76190 0.80675 0.87756 1.90712 1.39871 1.64178 1.48188 1.86465 1.72008 1.24817 1.43471 1.23289 0.99128 0.94276 0.83719 1.21232 1.01945 0.90629 0.96365 0.89837 1.21515 1.00566 0.94064 0.98604 1.22211 1.02212 0.96422 0.97568 1.21919 0.98342 0.80629 0.94995 0.92085 1.86484 1.76103 1.19337 1.57983 1.21454 1.00948 0.94370 0.98257 1.21443 1.02468 0.94432 0.95989 1.20387 1.03289 0.93921 0.97740 0.74398 0.88507 1.22478 1.21569 0.86185 0.83285 0.83662 0.91043 0.90791 0.84351 0.84577 0.90816 0.90911 0.90890 0.91275 0.90549 0.91758 0.75718 0.91271 0.91751 0.90570 0.90134 0.84154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.40 12.81 -148.98 -1.91 -2.31 16 2 C -0.08 -0.04 2.79 71.24 0.20 0.16 16 3 Si 0.78 -1.16 29.85 68.60 2.05 0.89 16 4 C -0.05 -0.34 5.38 -19.88 -0.11 -0.45 16 5 C -0.18 -1.24 8.67 22.28 0.19 -1.05 16 6 C -0.08 -0.39 10.04 22.25 0.22 -0.16 16 7 C -0.21 -1.08 9.04 22.36 0.20 -0.88 16 8 C 0.12 0.83 6.69 22.50 0.15 0.98 16 9 O -0.32 -1.42 10.14 -92.51 -0.94 -2.36 16 10 C 0.07 0.04 4.03 71.98 0.29 0.33 16 11 C -0.11 0.36 6.18 29.85 0.18 0.54 16 12 C 0.47 0.76 7.96 71.23 0.57 1.33 16 13 O -0.54 -4.18 15.73 21.94 0.35 -3.83 16 14 O -0.35 -0.22 9.76 -51.34 -0.50 -0.72 16 15 C 0.07 -0.06 4.84 71.98 0.35 0.29 16 16 C -0.08 0.25 2.44 -10.79 -0.03 0.22 16 17 H 0.08 -0.17 8.14 -2.38 -0.02 -0.19 16 18 C -0.11 0.37 5.10 30.59 0.16 0.53 16 19 C -0.15 0.42 5.54 30.59 0.17 0.59 16 20 C 0.10 -0.11 3.47 30.59 0.11 0.00 16 21 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 22 O -0.59 -1.06 13.32 -148.98 -1.98 -3.04 16 23 C -0.11 0.09 5.57 30.59 0.17 0.26 16 24 C -0.11 0.39 5.20 30.60 0.16 0.55 16 25 C -0.13 -0.95 9.62 22.37 0.22 -0.73 16 26 H 0.40 -4.16 8.74 -74.06 -0.65 -4.81 16 27 H 0.10 -0.37 7.96 -2.38 -0.02 -0.39 16 28 H -0.30 -1.80 7.05 99.48 0.70 -1.10 16 29 H -0.29 -1.13 7.11 99.48 0.71 -0.42 16 30 H 0.12 0.70 4.86 -2.91 -0.01 0.68 16 31 H 0.15 0.03 8.06 -2.91 -0.02 0.01 16 32 H 0.15 0.29 6.30 -2.91 -0.02 0.27 16 33 H 0.07 0.09 7.61 -2.39 -0.02 0.07 16 34 H 0.07 0.05 7.63 -2.38 -0.02 0.04 16 35 H 0.14 -0.94 8.14 -2.39 -0.02 -0.96 16 36 H 0.14 -0.85 8.14 -2.38 -0.02 -0.87 16 37 H 0.07 -0.05 8.13 -2.39 -0.02 -0.07 16 38 H 0.07 -0.03 8.13 -2.39 -0.02 -0.05 16 39 H 0.07 -0.19 7.82 -2.39 -0.02 -0.21 16 40 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 41 H 0.08 -0.36 8.14 -2.39 -0.02 -0.37 16 42 H 0.06 -0.06 8.14 -2.39 -0.02 -0.07 16 43 H 0.39 -2.37 9.08 -74.06 -0.67 -3.04 16 44 H 0.07 0.01 8.14 -2.38 -0.02 -0.01 16 45 H 0.06 0.05 8.14 -2.38 -0.02 0.03 16 46 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 47 H 0.08 -0.37 8.14 -2.38 -0.02 -0.39 16 48 H 0.14 0.73 8.06 -2.91 -0.02 0.71 16 Total: 0.00 -20.78 390.28 -0.06 -20.84 By element: Atomic # 1 Polarization: -11.66 SS G_CDS: -0.32 Total: -11.98 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 3.20 Total: 2.52 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -4.99 Total: -12.26 kcal Atomic # 14 Polarization: -1.16 SS G_CDS: 2.05 Total: 0.89 kcal Total: -20.78 -0.06 -20.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_2303654_16737258.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.853 kcal (2) G-P(sol) polarization free energy of solvation -20.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds