Wall clock time and date at job start Sat Mar 6 2021 05:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99840 * 2 1 4 4 C 1.53001 * 112.91354 * 68.10986 * 3 2 1 5 5 F 1.39895 * 109.46634 * 283.76718 * 4 3 2 6 6 F 1.39902 * 109.46948 * 43.76005 * 4 3 2 7 7 F 1.39889 * 109.47487 * 163.76682 * 4 3 2 8 8 C 1.53776 * 113.61491 * 296.85204 * 3 2 1 9 9 C 1.53785 * 87.08469 * 270.88916 * 8 3 2 10 10 H 1.09002 * 113.61481 * 220.01861 * 9 8 3 11 11 C 1.52997 * 113.61291 * 89.19933 * 9 8 3 12 12 O 1.45199 * 109.47078 * 176.53260 * 11 9 8 13 13 C 1.34226 * 117.00432 * 179.97438 * 12 11 9 14 14 O 1.20823 * 119.99970 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00354 * 179.97438 * 13 12 11 16 16 C 1.52998 * 109.47618 * 180.02562 * 15 13 12 17 17 O 1.42892 * 109.47783 * 180.02562 * 16 15 13 18 18 C 1.35901 * 117.00466 * 179.97438 * 17 16 15 19 19 C 1.38712 * 120.05703 * 179.72792 * 18 17 16 20 20 C 1.38167 * 119.94228 * 179.76933 * 19 18 17 21 21 C 1.50701 * 119.97284 * 180.22990 * 20 19 18 22 22 O 1.42902 * 109.46954 * 300.25615 * 21 20 19 23 23 Si 1.86297 * 109.47305 * 180.25386 * 21 20 19 24 24 C 1.38245 * 120.05448 * 0.48654 * 20 19 18 25 25 C 1.38285 * 120.11377 * 359.76820 * 24 20 19 26 26 C 1.38129 * 120.05468 * 0.02562 * 25 24 20 27 27 C 1.53786 * 87.07795 * 334.56603 * 9 8 3 28 28 H 1.08999 * 109.47209 * 179.24188 * 1 2 3 29 29 H 1.09007 * 109.47036 * 299.23763 * 1 2 3 30 30 H 1.08995 * 109.47431 * 59.23722 * 1 2 3 31 31 H 1.09001 * 113.61596 * 156.33650 * 8 3 2 32 32 H 1.09002 * 113.68846 * 25.44708 * 8 3 2 33 33 H 1.09005 * 109.47378 * 296.52688 * 11 9 8 34 34 H 1.08998 * 109.47640 * 56.53483 * 11 9 8 35 35 H 1.08995 * 109.47818 * 300.00604 * 15 13 12 36 36 H 1.09008 * 109.47030 * 60.00510 * 15 13 12 37 37 H 1.09004 * 109.47363 * 300.00698 * 16 15 13 38 38 H 1.09008 * 109.46616 * 60.00119 * 16 15 13 39 39 H 1.08005 * 120.02864 * 359.97438 * 19 18 17 40 40 H 1.08999 * 109.46895 * 60.25245 * 21 20 19 41 41 H 0.96700 * 114.00302 * 299.99482 * 22 21 20 42 42 H 1.48494 * 110.00016 * 180.02562 * 23 21 20 43 43 H 1.48495 * 110.00060 * 301.32297 * 23 21 20 44 44 H 1.07999 * 119.94342 * 179.74264 * 24 20 19 45 45 H 1.08003 * 119.97436 * 179.97438 * 25 24 20 46 46 H 1.07997 * 120.02798 * 180.02562 * 26 25 24 47 47 H 1.09001 * 113.60879 * 139.98357 * 27 9 8 48 48 H 1.08992 * 113.61272 * 270.88376 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7725 2.0633 1.3077 5 9 0.4548 2.5321 1.3419 6 9 1.9901 1.2046 2.3905 7 9 2.6548 3.1460 1.3863 8 6 1.6793 2.1270 -1.2571 9 6 2.9350 1.5098 -1.8953 10 1 3.5121 2.2148 -2.4937 11 6 2.6671 0.1916 -2.6243 12 8 3.8896 -0.2675 -3.2591 13 6 3.8247 -1.4197 -3.9446 14 8 2.7809 -2.0244 -4.0124 15 6 5.0535 -1.9585 -4.6307 16 6 4.7097 -3.2725 -5.3349 17 8 5.8749 -3.7838 -5.9850 18 6 5.7404 -4.9547 -6.6616 19 6 6.8297 -5.5054 -7.3206 20 6 6.6915 -6.6983 -8.0039 21 6 7.8758 -7.2998 -8.7157 22 8 8.3534 -6.3840 -9.7033 23 14 7.3631 -8.8901 -9.5397 24 6 5.4664 -7.3379 -8.0394 25 6 4.3776 -6.7882 -7.3877 26 6 4.5117 -5.5980 -6.6997 27 6 3.4753 1.3274 -0.4671 28 1 -0.3633 -1.0276 -0.0136 29 1 -0.3633 0.5020 0.8968 30 1 -0.3634 0.5256 -0.8830 31 1 1.7507 3.2042 -1.1060 32 1 0.7506 1.8285 -1.7435 33 1 2.3262 -0.5566 -1.9086 34 1 1.8995 0.3453 -3.3827 35 1 5.4066 -1.2347 -5.3651 36 1 5.8343 -2.1359 -3.8910 37 1 4.3564 -3.9967 -4.6008 38 1 3.9290 -3.0948 -6.0747 39 1 7.7859 -5.0037 -7.2969 40 1 8.6680 -7.5029 -7.9952 41 1 7.6995 -6.1575 -10.3787 42 1 8.5223 -9.4935 -10.2447 43 1 6.8347 -9.8393 -8.5273 44 1 5.3594 -8.2681 -8.5775 45 1 3.4215 -7.2896 -7.4173 46 1 3.6612 -5.1694 -6.1905 47 1 3.9964 0.3822 -0.3148 48 1 4.0377 2.1859 -0.1001 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_2303654_17321610.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:02:17 Heat of formation + Delta-G solvation = -281.442626 kcal Electronic energy + Delta-G solvation = -36088.954703 eV Core-core repulsion = 30470.037793 eV Total energy + Delta-G solvation = -5618.916910 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 391.142 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -51.27124 -48.80428 -48.74477 -41.95551 -41.36660 -41.01948 -39.21181 -37.90840 -37.26451 -36.91420 -33.58636 -32.45799 -31.11396 -30.57654 -28.29518 -27.64345 -26.97937 -26.76886 -25.53200 -23.68342 -23.38135 -22.36072 -21.59606 -20.65605 -19.83698 -19.56778 -19.42850 -19.26662 -18.59738 -18.00376 -17.93089 -17.29198 -17.27196 -17.05795 -16.92761 -16.86987 -16.50074 -16.11843 -15.86772 -15.68747 -15.62313 -15.43442 -15.29847 -15.15106 -14.96703 -14.90730 -14.87381 -14.82072 -14.48604 -14.27889 -14.19961 -14.09012 -13.74370 -13.32860 -13.26084 -13.16501 -12.96587 -12.86140 -12.77299 -12.42483 -12.37570 -12.05611 -11.99716 -11.87919 -11.76924 -11.69822 -11.63131 -11.57537 -10.81922 -10.50327 -9.92563 -9.28702 -4.97795 0.19405 0.38385 1.04316 1.20545 1.33443 1.51575 1.65789 1.96741 2.06166 2.29310 2.54912 2.61282 2.66385 2.87155 3.26472 3.28142 3.41026 3.47281 3.53951 3.64857 3.68299 3.81135 3.83551 3.92779 4.08350 4.20075 4.21072 4.21596 4.23560 4.26694 4.33670 4.37448 4.45714 4.49724 4.50173 4.57554 4.59575 4.61663 4.67624 4.71685 4.76990 4.81331 4.97566 5.00214 5.24476 5.33671 5.37653 5.43708 5.68286 5.68845 6.30310 6.57765 6.76675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.348 6.348 3 C 0.031 3.969 4 C 0.433 3.567 5 F -0.185 7.185 6 F -0.189 7.189 7 F -0.175 7.175 8 C -0.135 4.135 9 C -0.092 4.092 10 H 0.124 0.876 11 C 0.075 3.925 12 O -0.351 6.351 13 C 0.474 3.526 14 O -0.537 6.537 15 C -0.108 4.108 16 C 0.070 3.930 17 O -0.322 6.322 18 C 0.117 3.883 19 C -0.141 4.141 20 C -0.085 4.085 21 C -0.078 4.078 22 O -0.555 6.555 23 Si 0.786 3.214 24 C -0.157 4.157 25 C -0.075 4.075 26 C -0.210 4.210 27 C -0.113 4.113 28 H 0.109 0.891 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.128 0.872 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.127 0.873 40 H 0.106 0.894 41 H 0.396 0.604 42 H -0.299 1.299 43 H -0.284 1.284 44 H 0.148 0.852 45 H 0.154 0.846 46 H 0.140 0.860 47 H 0.090 0.910 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.859 2.040 -3.785 5.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.266 6.266 3 C -0.011 4.011 4 C 0.379 3.621 5 F -0.166 7.166 6 F -0.170 7.170 7 F -0.156 7.156 8 C -0.172 4.172 9 C -0.111 4.111 10 H 0.142 0.858 11 C 0.001 3.999 12 O -0.267 6.267 13 C 0.319 3.681 14 O -0.427 6.427 15 C -0.145 4.145 16 C -0.005 4.005 17 O -0.237 6.237 18 C 0.072 3.928 19 C -0.160 4.160 20 C -0.085 4.085 21 C -0.188 4.188 22 O -0.363 6.363 23 Si 0.692 3.308 24 C -0.175 4.175 25 C -0.093 4.093 26 C -0.229 4.229 27 C -0.150 4.150 28 H 0.127 0.873 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.146 0.854 32 H 0.122 0.878 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.145 0.855 40 H 0.124 0.876 41 H 0.246 0.754 42 H -0.228 1.228 43 H -0.211 1.211 44 H 0.165 0.835 45 H 0.171 0.829 46 H 0.157 0.843 47 H 0.109 0.891 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.280 0.979 -3.406 4.214 hybrid contribution -0.461 0.530 1.414 1.579 sum -2.741 1.509 -1.991 3.709 Atomic orbital electron populations 1.23267 0.78766 1.05114 1.01888 1.88076 1.22085 1.22636 1.93818 1.24254 1.01141 0.86413 0.89342 1.21502 0.73935 0.78453 0.88226 1.93178 1.37037 1.89475 1.96956 1.93188 1.94448 1.70298 1.59094 1.93170 1.68855 1.56900 1.96686 1.23650 0.99983 1.01538 0.92042 1.22059 0.97914 0.95893 0.95191 0.85772 1.23106 0.84042 0.96123 0.96581 1.86432 1.39932 1.38401 1.61933 1.23547 0.90293 0.78496 0.75810 1.90708 1.33299 1.59092 1.59579 1.21098 0.94379 0.96974 1.02085 1.22469 0.86424 0.94896 0.96680 1.85938 1.37002 1.35858 1.64870 1.19115 0.94531 0.85932 0.93228 1.20312 0.98033 0.97168 1.00443 1.20239 0.95764 0.94690 0.97812 1.25295 0.96547 1.03182 0.93729 1.86470 1.43360 1.65826 1.40664 0.93547 0.82137 0.72605 0.82546 1.21183 0.92290 1.01309 1.02682 1.21259 0.99783 0.94025 0.94200 1.21562 0.96865 0.98917 1.05513 1.23354 0.90695 1.05884 0.95029 0.87310 0.93406 0.91143 0.85390 0.87795 0.90221 0.90219 0.84390 0.84769 0.91166 0.90720 0.85521 0.87615 0.75424 1.22756 1.21144 0.83515 0.82856 0.84253 0.89086 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.42 113.37 1.18 1.17 16 2 O -0.35 -0.36 8.34 -148.98 -1.24 -1.60 16 3 C 0.03 -0.05 0.84 -10.27 -0.01 -0.06 16 4 C 0.43 0.82 2.57 71.98 0.19 1.01 16 5 F -0.19 -0.47 15.35 44.97 0.69 0.22 16 6 F -0.19 -1.19 17.10 44.97 0.77 -0.42 16 7 F -0.17 -0.25 15.81 44.97 0.71 0.47 16 8 C -0.13 0.89 6.50 31.12 0.20 1.10 16 9 C -0.09 0.55 4.20 -10.27 -0.04 0.51 16 10 H 0.12 -1.09 8.14 -2.39 -0.02 -1.11 16 11 C 0.07 -0.14 5.07 71.98 0.36 0.22 16 12 O -0.35 0.18 10.22 -51.38 -0.53 -0.35 16 13 C 0.47 0.33 7.96 71.23 0.57 0.89 16 14 O -0.54 -3.57 15.73 21.97 0.35 -3.22 16 15 C -0.11 0.45 6.18 29.85 0.18 0.64 16 16 C 0.07 -0.05 4.03 71.98 0.29 0.24 16 17 O -0.32 -1.03 10.14 -92.43 -0.94 -1.97 16 18 C 0.12 0.48 6.69 22.51 0.15 0.63 16 19 C -0.14 -0.60 9.55 22.37 0.21 -0.39 16 20 C -0.08 -0.12 5.39 -19.88 -0.11 -0.23 16 21 C -0.08 -0.02 2.82 71.24 0.20 0.18 16 22 O -0.56 -0.59 12.76 -148.98 -1.90 -2.49 16 23 Si 0.79 -1.78 29.79 68.60 2.04 0.26 16 24 C -0.16 0.16 8.67 22.28 0.19 0.36 16 25 C -0.07 0.08 10.04 22.26 0.22 0.30 16 26 C -0.21 -0.30 9.04 22.37 0.20 -0.10 16 27 C -0.11 0.46 6.90 31.12 0.21 0.67 16 28 H 0.11 -0.46 8.14 -2.39 -0.02 -0.48 16 29 H 0.05 -0.06 6.48 -2.38 -0.02 -0.07 16 30 H 0.07 -0.41 6.55 -2.39 -0.02 -0.43 16 31 H 0.13 -1.16 8.05 -2.39 -0.02 -1.18 16 32 H 0.10 -0.84 6.54 -2.39 -0.02 -0.86 16 33 H 0.08 0.09 6.09 -2.38 -0.01 0.08 16 34 H 0.08 -0.20 8.13 -2.39 -0.02 -0.22 16 35 H 0.14 -1.04 8.14 -2.39 -0.02 -1.06 16 36 H 0.13 -0.91 8.14 -2.38 -0.02 -0.93 16 37 H 0.07 0.00 7.62 -2.38 -0.02 -0.02 16 38 H 0.07 -0.06 7.62 -2.38 -0.02 -0.07 16 39 H 0.13 0.63 8.06 -2.91 -0.02 0.61 16 40 H 0.11 0.18 7.96 -2.39 -0.02 0.17 16 41 H 0.40 -2.84 8.70 -74.06 -0.64 -3.48 16 42 H -0.30 -1.56 7.11 99.48 0.71 -0.85 16 43 H -0.28 -0.62 7.11 99.48 0.71 0.09 16 44 H 0.15 -0.80 4.87 -2.91 -0.01 -0.82 16 45 H 0.15 -0.93 8.06 -2.91 -0.02 -0.95 16 46 H 0.14 -0.11 6.30 -2.91 -0.02 -0.13 16 47 H 0.09 -0.21 8.10 -2.39 -0.02 -0.23 16 48 H 0.13 -0.83 7.01 -2.39 -0.02 -0.85 16 Total: 0.00 -19.35 405.04 4.59 -14.76 By element: Atomic # 1 Polarization: -13.22 SS G_CDS: 0.42 Total: -12.80 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 4.21 Total: 7.15 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -4.26 Total: -9.63 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 2.17 Total: 0.26 kcal Atomic # 14 Polarization: -1.78 SS G_CDS: 2.04 Total: 0.26 kcal Total: -19.35 4.59 -14.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_2303654_17321610.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -266.683 kcal (2) G-P(sol) polarization free energy of solvation -19.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -286.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -281.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds