Wall clock time and date at job start Sat Mar 6 2021 05:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86290 * 1 3 3 C 1.86295 * 109.47480 * 2 1 4 4 C 1.86304 * 109.46989 * 240.00109 * 2 1 3 5 5 C 1.86300 * 109.47392 * 120.00202 * 2 1 3 6 6 O 1.45208 * 109.46984 * 59.99449 * 5 2 1 7 7 C 1.34232 * 116.99618 * 75.00542 * 6 5 2 8 8 O 1.20826 * 120.00236 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00079 * 180.02562 * 7 6 5 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 6 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35900 * 117.00172 * 179.97438 * 11 10 9 13 13 C 1.38710 * 120.05544 * 359.72769 * 12 11 10 14 14 C 1.38159 * 119.94311 * 179.72143 * 13 12 11 15 15 C 1.38250 * 120.05742 * 0.57011 * 14 13 12 16 16 C 1.38280 * 120.10833 * 359.68104 * 15 14 13 17 17 C 1.50697 * 119.97205 * 180.02562 * 16 15 14 18 18 O 1.42902 * 109.47393 * 245.02079 * 17 16 15 19 19 Si 1.86306 * 109.47148 * 5.02162 * 17 16 15 20 20 H 1.48504 * 109.46673 * 59.99962 * 19 17 16 21 21 H 1.48495 * 109.47180 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.46932 * 300.00295 * 19 17 16 23 23 C 1.38129 * 120.05716 * 0.04353 * 16 15 14 24 24 H 1.09001 * 109.46920 * 300.00134 * 1 2 3 25 25 H 1.09007 * 109.47371 * 59.99560 * 1 2 3 26 26 H 1.08998 * 109.47406 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47310 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47473 * 300.00202 * 3 2 1 29 29 H 1.09001 * 109.47153 * 60.00008 * 3 2 1 30 30 H 1.08994 * 109.47312 * 299.99807 * 4 2 1 31 31 H 1.09001 * 109.47421 * 60.00215 * 4 2 1 32 32 H 1.08999 * 109.47150 * 180.02562 * 4 2 1 33 33 H 1.08998 * 109.47395 * 300.00194 * 5 2 1 34 34 H 1.08999 * 109.47401 * 179.97438 * 5 2 1 35 35 H 1.09002 * 109.47120 * 59.99588 * 9 7 6 36 36 H 1.08998 * 109.46862 * 300.00390 * 9 7 6 37 37 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 38 38 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 39 39 H 1.08006 * 120.02494 * 359.97438 * 13 12 11 40 40 H 1.08006 * 119.97038 * 180.27439 * 14 13 12 41 41 H 1.08000 * 119.94133 * 179.70045 * 15 14 13 42 42 H 1.09005 * 109.47122 * 125.02014 * 17 16 15 43 43 H 0.96696 * 113.99487 * 59.99932 * 18 17 16 44 44 H 1.07998 * 120.02418 * 180.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4840 -0.8783 1.5211 6 8 1.9999 -2.2473 1.5211 7 6 2.5941 -3.1037 0.6754 8 8 3.4887 -2.7220 -0.0415 9 6 2.1446 -4.5410 0.6191 10 6 2.9778 -5.2957 -0.4187 11 8 2.5512 -6.6585 -0.4725 12 6 3.1938 -7.4720 -1.3511 13 6 4.2101 -6.9677 -2.1492 14 6 4.8657 -7.7982 -3.0376 15 6 4.5018 -9.1280 -3.1400 16 6 3.4855 -9.6319 -2.3492 17 6 3.0916 -11.0820 -2.4629 18 8 1.7556 -11.1751 -2.9614 19 14 4.2527 -11.9510 -3.6324 20 1 5.6411 -11.8542 -3.1143 21 1 3.8650 -13.3801 -3.7440 22 1 4.1780 -11.3113 -4.9704 23 6 2.8307 -8.8070 -1.4554 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.5740 1.7563 -0.0005 28 1 2.1207 2.2703 -0.8900 29 1 2.1207 2.2702 0.8900 30 1 2.1206 -1.9058 -1.5212 31 1 2.1206 -0.3644 -2.4112 32 1 3.5739 -0.8786 -1.5210 33 1 2.1207 -0.3645 2.4111 34 1 3.5740 -0.8787 1.5208 35 1 1.0920 -4.5818 0.3389 36 1 2.2781 -5.0019 1.5977 37 1 4.0305 -5.2549 -0.1389 38 1 2.8438 -4.8345 -1.3972 39 1 4.4913 -5.9277 -2.0732 40 1 5.6601 -7.4070 -3.6560 41 1 5.0123 -9.7743 -3.8385 42 1 3.1465 -11.5515 -1.4807 43 1 1.6327 -10.7768 -3.8339 44 1 2.0373 -9.2012 -0.8378 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_2303654_4858416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:11:11 Heat of formation + Delta-G solvation = -165.102340 kcal Electronic energy + Delta-G solvation = -23430.068751 eV Core-core repulsion = 19857.873130 eV Total energy + Delta-G solvation = -3572.195622 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.70198 -41.16529 -39.20277 -37.57167 -37.22683 -33.60072 -32.45831 -30.96078 -29.76413 -28.54828 -28.42997 -28.26649 -26.96855 -25.34480 -23.69658 -22.27952 -21.52558 -19.44052 -18.55267 -18.07152 -17.98369 -17.31142 -17.19734 -16.93127 -16.86152 -16.14518 -15.62565 -14.99024 -14.89390 -14.77964 -14.54995 -14.34422 -14.32672 -14.04385 -13.98872 -13.83822 -13.50349 -13.36052 -13.27940 -13.16498 -13.11994 -12.92975 -12.88110 -12.51038 -12.40277 -12.17731 -11.91756 -11.86638 -11.57205 -11.52088 -10.97399 -10.83692 -10.47192 -10.46983 -9.91176 -9.24629 0.22335 0.41338 1.07477 1.12092 1.26271 1.43500 1.45938 1.52428 1.77630 1.79566 1.91324 2.42728 2.46254 2.68575 3.40686 3.47888 3.65731 3.72321 3.82548 3.92222 4.02446 4.12600 4.18388 4.22266 4.32442 4.47782 4.53367 4.56992 4.57834 4.61526 4.63231 4.68307 4.70047 4.70456 4.80828 4.87351 4.98507 5.26174 5.31338 5.37827 5.38717 5.44802 5.45916 5.64887 5.68185 6.34350 6.53868 6.66730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.447 4.447 2 Si 1.001 2.999 3 C -0.447 4.447 4 C -0.436 4.436 5 C -0.240 4.240 6 O -0.333 6.333 7 C 0.453 3.547 8 O -0.493 6.493 9 C -0.116 4.116 10 C 0.070 3.930 11 O -0.313 6.313 12 C 0.132 3.868 13 C -0.202 4.202 14 C -0.073 4.073 15 C -0.163 4.163 16 C -0.082 4.082 17 C -0.082 4.082 18 O -0.537 6.537 19 Si 0.955 3.045 20 H -0.250 1.250 21 H -0.254 1.254 22 H -0.252 1.252 23 C -0.121 4.121 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.377 0.623 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.086 1.755 0.032 1.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.197 2.803 3 C -0.555 4.555 4 C -0.544 4.544 5 C -0.358 4.358 6 O -0.249 6.249 7 C 0.296 3.704 8 O -0.381 6.381 9 C -0.154 4.154 10 C -0.005 4.005 11 O -0.227 6.227 12 C 0.087 3.913 13 C -0.221 4.221 14 C -0.091 4.091 15 C -0.181 4.181 16 C -0.083 4.083 17 C -0.192 4.192 18 O -0.342 6.342 19 Si 0.777 3.223 20 H -0.174 1.174 21 H -0.178 1.178 22 H -0.175 1.175 23 C -0.140 4.140 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.099 0.901 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.224 0.776 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.513 1.122 0.020 1.234 hybrid contribution 0.172 0.914 -0.127 0.938 sum 0.685 2.035 -0.106 2.150 Atomic orbital electron populations 1.26073 1.20042 1.04716 1.04652 0.79667 0.67641 0.67143 0.65846 1.26048 1.06498 1.18091 1.04892 1.26241 1.07029 1.07150 1.13992 1.28395 1.05301 0.83800 1.18311 1.86419 1.59005 1.21331 1.58106 1.23219 0.80700 0.88781 0.77718 1.90700 1.28882 1.78291 1.40216 1.21082 1.03244 0.88142 1.02918 1.22445 0.98740 0.79673 0.99629 1.85968 1.58677 1.20682 1.57389 1.18948 0.92059 0.90466 0.89845 1.21377 0.99282 1.01252 1.00189 1.20906 0.98366 0.92972 0.96823 1.20985 0.99306 0.96398 1.01405 1.20099 0.95930 0.96244 0.95993 1.25033 0.91573 0.95387 1.07236 1.86530 1.26675 1.82075 1.38889 0.85611 0.78160 0.79826 0.78666 1.17369 1.17835 1.17545 1.20252 1.02267 0.90306 1.01168 0.91028 0.90943 0.91071 0.90975 0.90624 0.91020 0.91690 0.91813 0.90414 0.87137 0.90063 0.86268 0.86300 0.90683 0.90627 0.84987 0.85242 0.85993 0.86241 0.77593 0.84557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.62 8.65 101.05 0.87 1.50 16 2 Si 1.00 -2.09 12.12 -169.99 -2.06 -4.15 16 3 C -0.45 0.79 8.65 101.05 0.87 1.67 16 4 C -0.44 -0.04 7.10 101.05 0.72 0.68 16 5 C -0.24 0.25 5.40 101.05 0.55 0.79 16 6 O -0.33 -0.11 9.92 -39.26 -0.39 -0.50 16 7 C 0.45 0.15 6.74 36.00 0.24 0.40 16 8 O -0.49 -1.01 11.65 -18.75 -0.22 -1.23 16 9 C -0.12 0.19 6.18 -27.89 -0.17 0.01 16 10 C 0.07 -0.03 4.03 37.16 0.15 0.12 16 11 O -0.31 -0.46 10.14 -19.43 -0.20 -0.65 16 12 C 0.13 0.25 6.69 -39.22 -0.26 -0.01 16 13 C -0.20 -0.21 9.04 -39.44 -0.36 -0.56 16 14 C -0.07 -0.04 10.04 -39.61 -0.40 -0.43 16 15 C -0.16 -0.10 8.67 -39.56 -0.34 -0.44 16 16 C -0.08 -0.07 5.35 -104.65 -0.56 -0.63 16 17 C -0.08 0.02 2.80 36.00 0.10 0.12 16 18 O -0.54 -0.25 12.83 -35.23 -0.45 -0.70 16 19 Si 0.95 -0.56 25.14 -169.99 -4.27 -4.83 16 20 H -0.25 -0.02 7.11 56.52 0.40 0.39 16 21 H -0.25 -0.22 7.11 56.52 0.40 0.18 16 22 H -0.25 0.12 7.04 56.52 0.40 0.52 16 23 C -0.12 -0.21 9.62 -39.43 -0.38 -0.59 16 24 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 25 H 0.07 -0.10 7.96 -51.92 -0.41 -0.52 16 26 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 27 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 28 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 29 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 30 H 0.06 0.05 6.28 -51.93 -0.33 -0.27 16 31 H 0.06 -0.02 7.96 -51.93 -0.41 -0.43 16 32 H 0.08 0.09 7.43 -51.93 -0.39 -0.29 16 33 H 0.11 -0.29 7.96 -51.93 -0.41 -0.71 16 34 H 0.08 -0.05 7.52 -51.93 -0.39 -0.44 16 35 H 0.12 -0.35 8.14 -51.93 -0.42 -0.77 16 36 H 0.12 -0.32 8.14 -51.93 -0.42 -0.74 16 37 H 0.07 -0.03 7.63 -51.93 -0.40 -0.42 16 38 H 0.08 -0.04 7.61 -51.93 -0.39 -0.43 16 39 H 0.13 -0.03 6.30 -52.48 -0.33 -0.36 16 40 H 0.13 -0.19 8.06 -52.48 -0.42 -0.62 16 41 H 0.12 -0.09 4.86 -52.49 -0.26 -0.34 16 42 H 0.12 -0.13 7.96 -51.93 -0.41 -0.54 16 43 H 0.38 -1.02 8.70 45.56 0.40 -0.63 16 44 H 0.14 0.18 8.06 -52.49 -0.42 -0.24 16 LS Contribution 362.40 15.07 5.46 5.46 Total: 0.00 -5.91 362.40 -7.39 -13.30 By element: Atomic # 1 Polarization: -3.02 SS G_CDS: -6.30 Total: -9.32 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 1.03 Total: 2.62 kcal Atomic # 8 Polarization: -1.83 SS G_CDS: -1.26 Total: -3.09 kcal Atomic # 14 Polarization: -2.65 SS G_CDS: -6.33 Total: -8.98 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -5.91 -7.39 -13.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_2303654_4858416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.802 kcal (2) G-P(sol) polarization free energy of solvation -5.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds