Wall clock time and date at job start Sat Mar 6 2021 05:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86290 * 1 3 3 C 1.86295 * 109.47480 * 2 1 4 4 C 1.86304 * 109.46989 * 240.00109 * 2 1 3 5 5 C 1.86300 * 109.47392 * 120.00202 * 2 1 3 6 6 O 1.45208 * 109.46984 * 59.99449 * 5 2 1 7 7 C 1.34232 * 116.99618 * 75.00542 * 6 5 2 8 8 O 1.20826 * 120.00236 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00079 * 180.02562 * 7 6 5 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 6 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35900 * 117.00172 * 179.97438 * 11 10 9 13 13 C 1.38710 * 120.05544 * 359.72769 * 12 11 10 14 14 C 1.38159 * 119.94311 * 179.72143 * 13 12 11 15 15 C 1.38250 * 120.05742 * 0.57011 * 14 13 12 16 16 C 1.38280 * 120.10833 * 359.68104 * 15 14 13 17 17 C 1.50697 * 119.97205 * 180.02562 * 16 15 14 18 18 O 1.42902 * 109.47393 * 245.02079 * 17 16 15 19 19 Si 1.86306 * 109.47148 * 5.02162 * 17 16 15 20 20 H 1.48504 * 109.46673 * 59.99962 * 19 17 16 21 21 H 1.48495 * 109.47180 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.46932 * 300.00295 * 19 17 16 23 23 C 1.38129 * 120.05716 * 0.04353 * 16 15 14 24 24 H 1.09001 * 109.46920 * 300.00134 * 1 2 3 25 25 H 1.09007 * 109.47371 * 59.99560 * 1 2 3 26 26 H 1.08998 * 109.47406 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47310 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47473 * 300.00202 * 3 2 1 29 29 H 1.09001 * 109.47153 * 60.00008 * 3 2 1 30 30 H 1.08994 * 109.47312 * 299.99807 * 4 2 1 31 31 H 1.09001 * 109.47421 * 60.00215 * 4 2 1 32 32 H 1.08999 * 109.47150 * 180.02562 * 4 2 1 33 33 H 1.08998 * 109.47395 * 300.00194 * 5 2 1 34 34 H 1.08999 * 109.47401 * 179.97438 * 5 2 1 35 35 H 1.09002 * 109.47120 * 59.99588 * 9 7 6 36 36 H 1.08998 * 109.46862 * 300.00390 * 9 7 6 37 37 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 38 38 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 39 39 H 1.08006 * 120.02494 * 359.97438 * 13 12 11 40 40 H 1.08006 * 119.97038 * 180.27439 * 14 13 12 41 41 H 1.08000 * 119.94133 * 179.70045 * 15 14 13 42 42 H 1.09005 * 109.47122 * 125.02014 * 17 16 15 43 43 H 0.96696 * 113.99487 * 59.99932 * 18 17 16 44 44 H 1.07998 * 120.02418 * 180.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4840 -0.8783 1.5211 6 8 1.9999 -2.2473 1.5211 7 6 2.5941 -3.1037 0.6754 8 8 3.4887 -2.7220 -0.0415 9 6 2.1446 -4.5410 0.6191 10 6 2.9778 -5.2957 -0.4187 11 8 2.5512 -6.6585 -0.4725 12 6 3.1938 -7.4720 -1.3511 13 6 4.2101 -6.9677 -2.1492 14 6 4.8657 -7.7982 -3.0376 15 6 4.5018 -9.1280 -3.1400 16 6 3.4855 -9.6319 -2.3492 17 6 3.0916 -11.0820 -2.4629 18 8 1.7556 -11.1751 -2.9614 19 14 4.2527 -11.9510 -3.6324 20 1 5.6411 -11.8542 -3.1143 21 1 3.8650 -13.3801 -3.7440 22 1 4.1780 -11.3113 -4.9704 23 6 2.8307 -8.8070 -1.4554 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.5740 1.7563 -0.0005 28 1 2.1207 2.2703 -0.8900 29 1 2.1207 2.2702 0.8900 30 1 2.1206 -1.9058 -1.5212 31 1 2.1206 -0.3644 -2.4112 32 1 3.5739 -0.8786 -1.5210 33 1 2.1207 -0.3645 2.4111 34 1 3.5740 -0.8787 1.5208 35 1 1.0920 -4.5818 0.3389 36 1 2.2781 -5.0019 1.5977 37 1 4.0305 -5.2549 -0.1389 38 1 2.8438 -4.8345 -1.3972 39 1 4.4913 -5.9277 -2.0732 40 1 5.6601 -7.4070 -3.6560 41 1 5.0123 -9.7743 -3.8385 42 1 3.1465 -11.5515 -1.4807 43 1 1.6327 -10.7768 -3.8339 44 1 2.0373 -9.2012 -0.8378 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_2303654_4858416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:11:11 Heat of formation + Delta-G solvation = -157.665012 kcal Electronic energy + Delta-G solvation = -23429.746245 eV Core-core repulsion = 19857.873130 eV Total energy + Delta-G solvation = -3571.873115 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.71747 -41.19997 -39.22537 -37.58542 -37.24009 -33.56690 -32.48740 -30.99321 -29.66457 -28.44463 -28.36274 -28.18579 -26.96586 -25.31494 -23.73533 -22.29911 -21.51057 -19.45751 -18.55948 -18.07924 -17.97065 -17.30337 -17.20534 -16.95247 -16.88957 -16.12896 -15.63363 -14.98926 -14.83900 -14.76781 -14.51203 -14.36243 -14.24991 -13.97256 -13.89905 -13.77097 -13.44201 -13.26184 -13.25705 -13.11657 -13.05267 -12.92303 -12.84062 -12.49353 -12.39402 -12.15217 -11.93053 -11.85424 -11.60128 -11.52631 -10.85729 -10.77047 -10.46081 -10.39588 -9.95731 -9.30909 0.17434 0.35275 1.08641 1.15636 1.31706 1.47708 1.54913 1.58784 1.89117 1.90134 1.94906 2.45354 2.55971 2.63538 3.45798 3.54363 3.67835 3.81461 3.82096 3.96146 4.04213 4.17806 4.24083 4.24308 4.35371 4.54560 4.57767 4.61880 4.70058 4.73437 4.75269 4.76856 4.80022 4.81292 4.82630 4.87796 4.95883 5.21842 5.32578 5.35439 5.40493 5.52329 5.59889 5.63762 5.66202 6.29319 6.66955 6.69532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.456 4.456 2 Si 1.063 2.937 3 C -0.455 4.455 4 C -0.454 4.454 5 C -0.257 4.257 6 O -0.338 6.338 7 C 0.452 3.548 8 O -0.515 6.515 9 C -0.112 4.112 10 C 0.071 3.929 11 O -0.322 6.322 12 C 0.118 3.882 13 C -0.210 4.210 14 C -0.077 4.077 15 C -0.170 4.170 16 C -0.084 4.084 17 C -0.083 4.083 18 O -0.552 6.552 19 Si 0.990 3.010 20 H -0.257 1.257 21 H -0.276 1.276 22 H -0.250 1.250 23 C -0.136 4.136 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.129 0.871 34 H 0.075 0.925 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.140 0.860 40 H 0.149 0.851 41 H 0.135 0.865 42 H 0.125 0.875 43 H 0.389 0.611 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.241 2.173 0.162 2.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.564 4.564 2 Si 1.255 2.745 3 C -0.563 4.563 4 C -0.559 4.559 5 C -0.374 4.374 6 O -0.254 6.254 7 C 0.296 3.704 8 O -0.404 6.404 9 C -0.150 4.150 10 C -0.004 4.004 11 O -0.236 6.236 12 C 0.073 3.927 13 C -0.229 4.229 14 C -0.095 4.095 15 C -0.188 4.188 16 C -0.084 4.084 17 C -0.193 4.193 18 O -0.359 6.359 19 Si 0.814 3.186 20 H -0.181 1.181 21 H -0.201 1.201 22 H -0.173 1.173 23 C -0.155 4.155 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.147 0.853 34 H 0.094 0.906 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.157 0.843 40 H 0.167 0.833 41 H 0.153 0.847 42 H 0.142 0.858 43 H 0.238 0.762 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.356 1.540 0.137 1.586 hybrid contribution 0.224 0.785 -0.178 0.836 sum 0.579 2.325 -0.041 2.397 Atomic orbital electron populations 1.26179 1.20604 1.04577 1.05037 0.78722 0.66441 0.65933 0.63410 1.26126 1.06443 1.18381 1.05349 1.26504 1.06181 1.07173 1.16086 1.28696 1.05182 0.83455 1.20093 1.86412 1.59044 1.21921 1.57974 1.23541 0.80280 0.89358 0.77217 1.90695 1.29908 1.78768 1.41066 1.21107 1.03747 0.86856 1.03249 1.22477 0.98900 0.79065 1.00001 1.85944 1.58908 1.21304 1.57432 1.19129 0.92543 0.90714 0.90281 1.21539 0.99232 1.01823 1.00276 1.21204 0.98611 0.92962 0.96701 1.21205 0.99291 0.96755 1.01557 1.20243 0.95830 0.96652 0.95680 1.25131 0.91470 0.94824 1.07861 1.86495 1.27081 1.82309 1.39989 0.85103 0.77141 0.78066 0.78269 1.18133 1.20098 1.17329 1.20363 1.02726 0.90597 1.01790 0.90367 0.90847 0.91485 0.91197 0.90575 0.90170 0.92645 0.91697 0.91830 0.85315 0.90643 0.84751 0.84967 0.90937 0.90823 0.84260 0.83300 0.84712 0.85761 0.76163 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.49 8.65 113.37 0.98 2.47 16 2 Si 1.06 -4.48 12.12 68.60 0.83 -3.65 16 3 C -0.45 1.83 8.65 113.37 0.98 2.81 16 4 C -0.45 -0.57 7.10 113.37 0.81 0.24 16 5 C -0.26 0.57 5.40 113.37 0.61 1.18 16 6 O -0.34 -0.23 9.92 -51.44 -0.51 -0.74 16 7 C 0.45 0.54 6.74 71.23 0.48 1.02 16 8 O -0.51 -2.68 11.65 21.97 0.26 -2.42 16 9 C -0.11 0.33 6.18 29.85 0.18 0.52 16 10 C 0.07 0.01 4.03 71.98 0.29 0.30 16 11 O -0.32 -1.21 10.14 -92.43 -0.94 -2.15 16 12 C 0.12 0.55 6.69 22.50 0.15 0.70 16 13 C -0.21 -0.54 9.04 22.36 0.20 -0.34 16 14 C -0.08 -0.07 10.04 22.25 0.22 0.16 16 15 C -0.17 -0.17 8.67 22.28 0.19 0.02 16 16 C -0.08 -0.17 5.35 -19.88 -0.11 -0.28 16 17 C -0.08 0.03 2.80 71.23 0.20 0.23 16 18 O -0.55 -0.63 12.83 -148.98 -1.91 -2.54 16 19 Si 0.99 -1.31 25.14 68.60 1.72 0.42 16 20 H -0.26 0.05 7.11 99.48 0.71 0.76 16 21 H -0.28 -0.59 7.11 99.48 0.71 0.11 16 22 H -0.25 0.44 7.04 99.48 0.70 1.14 16 23 C -0.14 -0.59 9.62 22.37 0.22 -0.37 16 24 H 0.08 -0.34 7.96 -2.39 -0.02 -0.36 16 25 H 0.07 -0.24 7.96 -2.38 -0.02 -0.26 16 26 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 27 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 28 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 29 H 0.08 -0.44 7.96 -2.39 -0.02 -0.46 16 30 H 0.05 0.17 6.28 -2.39 -0.02 0.15 16 31 H 0.06 0.02 7.96 -2.39 -0.02 0.00 16 32 H 0.06 0.25 7.43 -2.39 -0.02 0.24 16 33 H 0.13 -0.80 7.96 -2.39 -0.02 -0.82 16 34 H 0.07 -0.06 7.52 -2.39 -0.02 -0.08 16 35 H 0.13 -0.81 8.14 -2.39 -0.02 -0.83 16 36 H 0.13 -0.74 8.14 -2.39 -0.02 -0.76 16 37 H 0.07 0.03 7.63 -2.39 -0.02 0.01 16 38 H 0.07 0.02 7.61 -2.39 -0.02 0.00 16 39 H 0.14 0.05 6.30 -2.91 -0.02 0.03 16 40 H 0.15 -0.56 8.06 -2.91 -0.02 -0.58 16 41 H 0.14 -0.29 4.86 -2.91 -0.01 -0.30 16 42 H 0.12 -0.22 7.96 -2.38 -0.02 -0.24 16 43 H 0.39 -2.07 8.70 -74.06 -0.64 -2.71 16 44 H 0.13 0.53 8.06 -2.91 -0.02 0.51 16 Total: 0.00 -13.57 362.40 5.96 -7.61 By element: Atomic # 1 Polarization: -6.27 SS G_CDS: 1.09 Total: -5.17 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 5.41 Total: 8.65 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -3.10 Total: -7.85 kcal Atomic # 14 Polarization: -5.79 SS G_CDS: 2.56 Total: -3.23 kcal Total: -13.57 5.96 -7.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_2303654_4858416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.052 kcal (2) G-P(sol) polarization free energy of solvation -13.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds