Wall clock time and date at job start Sat Mar 6 2021 07:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86291 * 1 3 3 C 1.86306 * 109.47386 * 2 1 4 4 C 1.86299 * 109.47383 * 240.00121 * 2 1 3 5 5 C 1.86798 * 109.47538 * 120.00203 * 2 1 3 6 6 C 1.38230 * 120.00367 * 89.99681 * 5 2 1 7 7 C 1.38231 * 120.00370 * 180.02562 * 6 5 2 8 8 C 1.38237 * 119.99925 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99795 * 179.97438 * 8 7 6 10 10 O 1.45208 * 109.46716 * 90.00001 * 9 8 7 11 11 C 1.34232 * 116.99618 * 179.97438 * 10 9 8 12 12 O 1.20826 * 120.00236 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00079 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.47466 * 179.97438 * 13 11 10 15 15 O 1.42898 * 109.47319 * 180.02562 * 14 13 11 16 16 C 1.35900 * 117.00172 * 179.97438 * 15 14 13 17 17 C 1.38710 * 120.05544 * 359.72769 * 16 15 14 18 18 C 1.38159 * 119.94311 * 179.72143 * 17 16 15 19 19 C 1.38250 * 120.05742 * 0.57011 * 18 17 16 20 20 C 1.38280 * 120.10833 * 359.68104 * 19 18 17 21 21 C 1.50697 * 119.97205 * 180.02562 * 20 19 18 22 22 O 1.42902 * 109.47393 * 245.02079 * 21 20 19 23 23 Si 1.86306 * 109.47148 * 5.02162 * 21 20 19 24 24 H 1.48504 * 109.46673 * 59.99962 * 23 21 20 25 25 H 1.48495 * 109.47180 * 179.97438 * 23 21 20 26 26 H 1.48491 * 109.46932 * 300.00295 * 23 21 20 27 27 C 1.38129 * 120.05716 * 0.04353 * 20 19 18 28 28 C 1.38226 * 120.00108 * 0.24870 * 8 7 6 29 29 C 1.38237 * 119.99928 * 270.02608 * 5 2 1 30 30 H 1.09006 * 109.46962 * 299.99712 * 1 2 3 31 31 H 1.08994 * 109.47280 * 60.00135 * 1 2 3 32 32 H 1.09000 * 109.47177 * 180.02562 * 1 2 3 33 33 H 1.08987 * 109.47377 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.46662 * 300.00411 * 3 2 1 35 35 H 1.09006 * 109.46862 * 59.99654 * 3 2 1 36 36 H 1.09000 * 109.47312 * 299.99993 * 4 2 1 37 37 H 1.09005 * 109.46736 * 59.99856 * 4 2 1 38 38 H 1.08996 * 109.47495 * 179.97438 * 4 2 1 39 39 H 1.08004 * 119.99988 * 0.02562 * 6 5 2 40 40 H 1.08007 * 120.00032 * 179.97438 * 7 6 5 41 41 H 1.08998 * 109.47632 * 330.00366 * 9 8 7 42 42 H 1.08996 * 109.47040 * 209.99324 * 9 8 7 43 43 H 1.09002 * 109.47120 * 59.99588 * 13 11 10 44 44 H 1.08998 * 109.46862 * 300.00390 * 13 11 10 45 45 H 1.09002 * 109.47153 * 59.99773 * 14 13 11 46 46 H 1.09001 * 109.46832 * 299.99964 * 14 13 11 47 47 H 1.08006 * 120.02494 * 359.97438 * 17 16 15 48 48 H 1.08006 * 119.97038 * 180.27439 * 18 17 16 49 49 H 1.08000 * 119.94133 * 179.70045 * 19 18 17 50 50 H 1.09005 * 109.47122 * 125.02014 * 21 20 19 51 51 H 0.96696 * 113.99487 * 59.99932 * 22 21 20 52 52 H 1.07998 * 120.02418 * 180.02562 * 27 20 19 53 53 H 1.08001 * 120.00481 * 179.73185 * 28 8 7 54 54 H 1.08003 * 119.99891 * 359.97438 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4857 -0.8806 1.5251 6 6 2.7161 -2.2431 1.4909 7 6 3.1765 -2.8949 2.6197 8 6 3.4059 -2.1841 3.7829 9 6 3.9073 -2.8948 5.0136 10 8 5.3594 -2.8948 5.0147 11 6 5.9679 -3.4925 6.0511 12 8 5.3092 -3.9986 6.9286 13 6 7.4728 -3.5315 6.1209 14 6 7.9056 -4.2643 7.3923 15 8 9.3326 -4.3008 7.4588 16 6 9.8845 -4.9203 8.5351 17 6 9.0696 -5.4765 9.5100 18 6 9.6331 -6.1108 10.6003 19 6 11.0081 -6.1811 10.7262 20 6 11.8227 -5.6228 9.7583 21 6 13.3211 -5.7017 9.8983 22 8 13.8542 -4.3859 10.0618 23 14 13.7521 -6.7358 11.3868 24 1 13.1981 -8.1031 11.2168 25 1 15.2286 -6.8140 11.5244 26 1 13.1731 -6.1151 12.6052 27 6 11.2642 -4.9925 8.6634 28 6 3.1702 -0.8226 3.8189 29 6 2.7156 -0.1698 2.6882 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.5739 1.7565 0.0005 34 1 2.1206 2.2703 -0.8900 35 1 2.1206 2.2703 0.8900 36 1 2.1207 -1.9058 -1.5212 37 1 2.1206 -0.3643 -2.4111 38 1 3.5739 -0.8778 -1.5214 39 1 2.5364 -2.7986 0.5823 40 1 3.3561 -3.9596 2.5930 41 1 3.5440 -3.9224 5.0132 42 1 3.5434 -2.3810 5.9034 43 1 7.8622 -2.5136 6.1383 44 1 7.8635 -4.0551 5.2484 45 1 7.5162 -5.2823 7.3754 46 1 7.5149 -3.7403 8.2646 47 1 7.9954 -5.4174 9.4147 48 1 8.9989 -6.5480 11.3575 49 1 11.4466 -6.6732 11.5818 50 1 13.7461 -6.1573 9.0039 51 1 13.5190 -3.9198 10.8399 52 1 11.9009 -4.5570 7.9076 53 1 3.3453 -0.2680 4.7289 54 1 2.5356 0.8948 2.7150 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_2303654_9435856.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:10:49 Heat of formation + Delta-G solvation = -143.731330 kcal Electronic energy + Delta-G solvation = -31140.186647 eV Core-core repulsion = 26744.937942 eV Total energy + Delta-G solvation = -4395.248705 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 388.171 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.85182 -41.25632 -40.03521 -39.22618 -37.76794 -37.26307 -33.75204 -32.92752 -32.49004 -31.90755 -30.94838 -29.44599 -28.28894 -28.26937 -27.76519 -26.96008 -25.50922 -23.74312 -23.51193 -22.50227 -22.08455 -21.63285 -19.51000 -18.72428 -18.22643 -18.06525 -17.80059 -17.27975 -17.07505 -16.94164 -16.79193 -16.16745 -15.98754 -15.87625 -15.62201 -14.97731 -14.75687 -14.66519 -14.50089 -14.38151 -14.34698 -14.15425 -14.04778 -13.85715 -13.83669 -13.70406 -13.40002 -13.29762 -13.14929 -13.10777 -13.02055 -12.96157 -12.92157 -12.68495 -12.41621 -12.15738 -12.12727 -11.93858 -11.89468 -11.82581 -11.74311 -11.52985 -10.92418 -10.79446 -10.75384 -10.46356 -9.96113 -9.83009 -9.71878 -9.31761 0.07091 0.16953 0.34782 0.49827 0.97045 1.15587 1.32977 1.47623 1.54856 1.83156 1.91913 2.02677 2.08116 2.34003 2.63047 2.66567 2.94229 3.37537 3.51055 3.62648 3.67691 3.73487 3.78402 3.78749 3.86265 4.02422 4.10335 4.16679 4.19157 4.20555 4.28243 4.34938 4.51419 4.53480 4.54229 4.59464 4.68718 4.71896 4.84897 4.85135 4.89152 4.90026 4.90511 4.91008 4.95521 4.96518 5.13761 5.18971 5.22207 5.33398 5.38925 5.40108 5.54102 5.56980 5.59791 5.65368 5.68335 5.71298 6.09331 6.27599 6.50284 6.69225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.126 2.874 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.371 4.371 6 C -0.103 4.103 7 C -0.120 4.120 8 C -0.107 4.107 9 C 0.109 3.891 10 O -0.352 6.352 11 C 0.474 3.526 12 O -0.536 6.536 13 C -0.108 4.108 14 C 0.071 3.929 15 O -0.321 6.321 16 C 0.118 3.882 17 C -0.210 4.210 18 C -0.077 4.077 19 C -0.170 4.170 20 C -0.083 4.083 21 C -0.083 4.083 22 O -0.552 6.552 23 Si 0.990 3.010 24 H -0.257 1.257 25 H -0.275 1.275 26 H -0.250 1.250 27 C -0.135 4.135 28 C -0.120 4.120 29 C -0.103 4.103 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.141 0.859 40 H 0.129 0.871 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.140 0.860 48 H 0.150 0.850 49 H 0.136 0.864 50 H 0.125 0.875 51 H 0.389 0.611 52 H 0.134 0.866 53 H 0.129 0.871 54 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.794 1.177 -1.914 2.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.314 2.686 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.411 4.411 6 C -0.120 4.120 7 C -0.138 4.138 8 C -0.107 4.107 9 C 0.036 3.964 10 O -0.269 6.269 11 C 0.318 3.682 12 O -0.426 6.426 13 C -0.145 4.145 14 C -0.004 4.004 15 O -0.235 6.235 16 C 0.073 3.927 17 C -0.229 4.229 18 C -0.094 4.094 19 C -0.188 4.188 20 C -0.084 4.084 21 C -0.193 4.193 22 O -0.359 6.359 23 Si 0.814 3.186 24 H -0.181 1.181 25 H -0.201 1.201 26 H -0.173 1.173 27 C -0.154 4.154 28 C -0.138 4.138 29 C -0.120 4.120 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.159 0.841 40 H 0.146 0.854 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.157 0.843 48 H 0.167 0.833 49 H 0.153 0.847 50 H 0.143 0.857 51 H 0.238 0.762 52 H 0.152 0.848 53 H 0.147 0.853 54 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.407 0.437 -1.590 2.168 hybrid contribution -0.812 0.095 0.534 0.976 sum -2.219 0.532 -1.056 2.515 Atomic orbital electron populations 1.26288 1.21575 1.04477 1.04592 0.77183 0.65182 0.64668 0.61606 1.26277 1.06433 1.19343 1.04898 1.26278 1.06434 1.08499 1.15743 1.28084 1.02129 0.99629 1.11216 1.21403 0.97238 0.95204 0.98182 1.21382 0.99076 1.00495 0.92828 1.19582 1.01896 0.94656 0.94611 1.21935 0.75956 1.01501 0.97009 1.86569 1.23781 1.70885 1.45618 1.23629 0.92113 0.73801 0.78620 1.90706 1.67986 1.44383 1.39533 1.21104 0.86380 1.06477 1.00519 1.22456 0.78149 1.01613 0.98181 1.85942 1.22554 1.73232 1.41768 1.19131 0.92927 0.93670 0.86998 1.21542 1.00707 1.04164 0.96487 1.21205 0.94967 0.96231 0.97045 1.21209 0.94368 1.03219 0.99979 1.20244 0.96638 0.97438 0.94074 1.25134 0.90101 0.91432 1.12633 1.86495 1.69411 1.27813 1.52166 0.85112 0.79007 0.78377 0.76153 1.18104 1.20053 1.17325 1.20358 0.91564 1.03425 1.00035 1.21382 0.99087 0.93603 0.99709 1.21408 0.97260 1.00832 0.92525 0.91399 0.90647 0.91397 0.91282 0.90639 0.90892 0.90887 0.90644 0.91282 0.84104 0.85352 0.89950 0.89951 0.84617 0.84598 0.90872 0.90887 0.84271 0.83265 0.84692 0.85738 0.76166 0.84787 0.85350 0.84102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.91 8.65 113.37 0.98 2.89 16 2 Si 1.13 -7.08 12.32 68.60 0.85 -6.24 16 3 C -0.46 2.24 8.53 113.37 0.97 3.21 16 4 C -0.46 2.24 8.53 113.37 0.97 3.21 16 5 C -0.37 0.45 4.59 22.27 0.10 0.56 16 6 C -0.10 0.00 9.29 22.27 0.21 0.21 16 7 C -0.12 -0.24 9.70 22.27 0.22 -0.02 16 8 C -0.11 -0.33 5.52 -19.87 -0.11 -0.44 16 9 C 0.11 0.30 5.59 71.24 0.40 0.70 16 10 O -0.35 -1.27 10.20 -51.44 -0.52 -1.80 16 11 C 0.47 1.36 7.96 71.23 0.57 1.93 16 12 O -0.54 -4.46 15.73 21.97 0.35 -4.11 16 13 C -0.11 0.27 6.18 29.85 0.18 0.45 16 14 C 0.07 0.03 4.03 71.98 0.29 0.32 16 15 O -0.32 -1.23 10.14 -92.43 -0.94 -2.16 16 16 C 0.12 0.55 6.69 22.50 0.15 0.70 16 17 C -0.21 -0.55 9.04 22.36 0.20 -0.35 16 18 C -0.08 -0.06 10.04 22.25 0.22 0.16 16 19 C -0.17 -0.17 8.67 22.28 0.19 0.03 16 20 C -0.08 -0.17 5.35 -19.88 -0.11 -0.27 16 21 C -0.08 0.03 2.80 71.23 0.20 0.23 16 22 O -0.55 -0.65 12.83 -148.98 -1.91 -2.56 16 23 Si 0.99 -1.31 25.14 68.60 1.72 0.42 16 24 H -0.26 0.06 7.11 99.48 0.71 0.77 16 25 H -0.28 -0.58 7.11 99.48 0.71 0.12 16 26 H -0.25 0.44 7.04 99.48 0.70 1.14 16 27 C -0.14 -0.58 9.62 22.37 0.22 -0.36 16 28 C -0.12 -0.24 9.70 22.27 0.22 -0.02 16 29 C -0.10 0.00 9.29 22.27 0.21 0.21 16 30 H 0.07 -0.23 7.96 -2.38 -0.02 -0.25 16 31 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 32 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 33 H 0.07 -0.28 7.96 -2.39 -0.02 -0.29 16 34 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 35 H 0.07 -0.38 7.69 -2.38 -0.02 -0.40 16 36 H 0.07 -0.38 7.69 -2.39 -0.02 -0.40 16 37 H 0.07 -0.39 7.96 -2.38 -0.02 -0.41 16 38 H 0.07 -0.28 7.96 -2.39 -0.02 -0.29 16 39 H 0.14 -0.61 7.43 -2.91 -0.02 -0.63 16 40 H 0.13 -0.08 8.06 -2.91 -0.02 -0.10 16 41 H 0.08 0.17 8.08 -2.39 -0.02 0.15 16 42 H 0.08 0.17 8.08 -2.39 -0.02 0.15 16 43 H 0.14 -0.73 8.14 -2.39 -0.02 -0.75 16 44 H 0.14 -0.74 8.14 -2.39 -0.02 -0.76 16 45 H 0.07 0.04 7.63 -2.39 -0.02 0.03 16 46 H 0.07 0.04 7.61 -2.39 -0.02 0.03 16 47 H 0.14 0.06 6.30 -2.91 -0.02 0.04 16 48 H 0.15 -0.56 8.06 -2.91 -0.02 -0.59 16 49 H 0.14 -0.29 4.86 -2.91 -0.01 -0.31 16 50 H 0.12 -0.22 7.96 -2.38 -0.02 -0.24 16 51 H 0.39 -2.05 8.70 -74.06 -0.64 -2.69 16 52 H 0.13 0.53 8.06 -2.91 -0.02 0.50 16 53 H 0.13 -0.08 8.06 -2.91 -0.02 -0.10 16 54 H 0.14 -0.61 7.43 -2.91 -0.02 -0.63 16 Total: 0.00 -16.90 451.09 6.81 -10.09 By element: Atomic # 1 Polarization: -7.95 SS G_CDS: 1.00 Total: -6.95 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 6.27 Total: 13.32 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -3.03 Total: -10.63 kcal Atomic # 14 Polarization: -8.39 SS G_CDS: 2.57 Total: -5.82 kcal Total: -16.90 6.81 -10.09 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_2303654_9435856.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.645 kcal (2) G-P(sol) polarization free energy of solvation -16.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds