Wall clock time and date at job start Sat Mar 6 2021 05:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86297 * 109.47401 * 2 1 4 4 C 1.50704 * 109.47449 * 119.99983 * 2 1 3 5 5 C 1.38244 * 119.97303 * 245.02338 * 4 2 1 6 6 C 1.38284 * 120.10940 * 179.97438 * 5 4 2 7 7 C 1.38127 * 120.05804 * 359.76476 * 6 5 4 8 8 C 1.38755 * 119.94088 * 0.51001 * 7 6 5 9 9 O 1.35896 * 120.05387 * 179.74765 * 8 7 6 10 10 C 1.42898 * 117.00202 * 359.71815 * 9 8 7 11 11 C 1.53007 * 109.47455 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.46995 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.46926 * 180.02562 * 12 11 10 14 14 O 1.20833 * 120.00074 * 359.97438 * 13 12 11 15 15 O 1.34232 * 120.00384 * 179.97438 * 13 12 11 16 16 C 1.45199 * 117.00308 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47231 * 179.97438 * 16 15 13 18 18 H 1.09002 * 109.47067 * 305.00121 * 17 16 15 19 19 C 1.53005 * 109.46982 * 64.99773 * 17 16 15 20 20 C 1.52999 * 109.47159 * 179.97438 * 19 17 16 21 21 C 1.52997 * 109.47317 * 300.00546 * 20 19 17 22 22 H 1.09002 * 109.47153 * 299.99641 * 21 20 19 23 23 O 1.42896 * 109.46906 * 179.97438 * 21 20 19 24 24 C 1.53000 * 109.47060 * 59.99960 * 21 20 19 25 25 C 1.52997 * 109.47143 * 185.00104 * 17 16 15 26 26 C 1.38165 * 119.96850 * 64.99774 * 4 2 1 27 27 H 0.96696 * 113.99923 * 299.99912 * 1 2 3 28 28 H 1.09003 * 109.47199 * 240.00073 * 2 1 3 29 29 H 1.48496 * 110.00402 * 178.68245 * 3 2 1 30 30 H 1.48500 * 109.99845 * 300.00292 * 3 2 1 31 31 H 1.08002 * 119.94269 * 359.97438 * 5 4 2 32 32 H 1.08003 * 119.97370 * 180.02562 * 6 5 4 33 33 H 1.07999 * 120.02856 * 180.27793 * 7 6 5 34 34 H 1.09001 * 109.46858 * 60.00655 * 10 9 8 35 35 H 1.09001 * 109.47725 * 300.00804 * 10 9 8 36 36 H 1.09001 * 109.46796 * 60.00319 * 11 10 9 37 37 H 1.08991 * 109.46614 * 300.00564 * 11 10 9 38 38 H 1.09001 * 109.47471 * 60.00263 * 12 11 10 39 39 H 1.09001 * 109.47048 * 300.00166 * 12 11 10 40 40 H 1.09000 * 109.46906 * 59.99830 * 16 15 13 41 41 H 1.09000 * 109.47159 * 299.99874 * 16 15 13 42 42 H 1.09000 * 109.47360 * 300.00293 * 19 17 16 43 43 H 1.09002 * 109.46935 * 60.00267 * 19 17 16 44 44 H 1.08996 * 109.46929 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.46716 * 60.00455 * 20 19 17 46 46 H 0.96699 * 114.00604 * 59.99725 * 23 21 20 47 47 H 1.08992 * 109.47399 * 59.99823 * 24 21 20 48 48 H 1.09004 * 109.46724 * 180.02562 * 24 21 20 49 49 H 1.08993 * 109.47194 * 59.99677 * 25 17 16 50 50 H 1.09002 * 109.46695 * 299.99691 * 25 17 16 51 51 H 1.07999 * 120.03513 * 0.04606 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.6384 -0.0116 2.1912 6 6 3.1002 -0.6605 3.3216 7 6 2.8519 -2.0080 3.4958 8 6 2.1475 -2.7129 2.5303 9 8 1.9063 -4.0399 2.6969 10 6 2.4126 -4.6468 3.8874 11 6 2.0462 -6.1323 3.8982 12 6 2.5877 -6.7819 5.1732 13 6 2.2273 -8.2451 5.1835 14 8 1.6011 -8.7196 4.2655 15 8 2.6019 -9.0214 6.2125 16 6 2.2197 -10.4211 6.1557 17 6 2.7313 -11.1406 7.4053 18 1 3.8064 -10.9871 7.4984 19 6 2.0270 -10.5784 8.6418 20 6 2.5381 -11.2984 9.8913 21 6 2.2445 -12.7953 9.7735 22 1 1.1693 -12.9484 9.6803 23 8 2.7224 -13.4677 10.9403 24 6 2.9489 -13.3573 8.5370 25 6 2.4381 -12.6376 7.2878 26 6 1.6845 -2.0595 1.3977 27 1 -0.3933 0.4417 0.7650 28 1 1.7923 -0.5138 -0.8900 29 1 3.5346 1.7703 0.0321 30 1 1.5615 2.4678 -1.2085 31 1 2.8303 1.0430 2.0586 32 1 3.6520 -0.1123 4.0709 33 1 3.2090 -2.5134 4.3809 34 1 1.9758 -4.1582 4.7584 35 1 3.4970 -4.5402 3.9169 36 1 2.4833 -6.6207 3.0273 37 1 0.9619 -6.2392 3.8686 38 1 2.1503 -6.2935 6.0439 39 1 3.6720 -6.6749 5.2031 40 1 2.6548 -10.8808 5.2684 41 1 1.1335 -10.4995 6.1100 42 1 2.2358 -9.5119 8.7255 43 1 0.9519 -10.7319 8.5488 44 1 2.0367 -10.8976 10.7722 45 1 3.6133 -11.1452 9.9846 46 1 2.3186 -13.1617 11.7639 47 1 4.0240 -13.2042 8.6303 48 1 2.7393 -14.4237 8.4529 49 1 2.9398 -13.0380 6.4069 50 1 1.3630 -12.7910 7.1948 51 1 1.1325 -2.6052 0.6468 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_2308196_16737258.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:18:22 Heat of formation + Delta-G solvation = -201.093873 kcal Electronic energy + Delta-G solvation = -29549.912157 eV Core-core repulsion = 25187.303738 eV Total energy + Delta-G solvation = -4362.608418 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.186 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.69033 -41.24194 -40.08996 -39.21772 -37.94806 -37.29015 -36.57567 -35.06791 -32.45258 -32.02984 -31.83827 -31.24413 -28.80670 -26.95306 -26.41676 -24.02343 -23.74560 -23.59015 -22.31690 -21.93094 -21.57233 -20.85684 -19.20271 -18.72584 -18.20835 -17.92997 -17.82905 -17.55398 -17.18091 -17.06449 -16.79828 -16.45490 -16.15871 -15.64117 -15.48054 -15.38792 -15.05257 -14.85898 -14.76936 -14.43230 -14.22498 -14.17007 -13.93759 -13.70605 -13.38473 -13.31343 -13.22703 -13.15298 -13.02075 -12.73580 -12.56069 -12.39713 -12.26861 -12.15009 -12.02500 -11.94037 -11.72209 -11.65138 -11.60986 -11.59172 -11.47569 -11.10952 -10.71822 -10.48925 -9.92628 -9.24186 -4.99101 0.22104 0.41289 1.12051 1.29326 1.49205 1.65660 1.96005 2.25365 2.68925 3.19742 3.44695 3.51542 3.61137 3.67725 3.70430 3.74512 3.82750 3.83873 3.92373 4.03192 4.06265 4.13223 4.15238 4.25419 4.26441 4.31377 4.32895 4.34721 4.36121 4.40730 4.46626 4.47137 4.50045 4.55569 4.61110 4.68462 4.79881 4.92628 4.94599 4.98942 5.03976 5.06791 5.09329 5.13721 5.16442 5.28452 5.30198 5.36290 5.39394 5.45819 5.46355 5.75124 6.42030 6.66049 6.74835 6.85512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.084 4.084 3 Si 0.791 3.209 4 C -0.086 4.086 5 C -0.158 4.158 6 C -0.073 4.073 7 C -0.205 4.205 8 C 0.116 3.884 9 O -0.338 6.338 10 C 0.058 3.942 11 C -0.106 4.106 12 C -0.101 4.101 13 C 0.460 3.540 14 O -0.546 6.546 15 O -0.354 6.354 16 C 0.069 3.931 17 C -0.082 4.082 18 H 0.084 0.916 19 C -0.109 4.109 20 C -0.145 4.145 21 C 0.099 3.901 22 H 0.060 0.940 23 O -0.590 6.590 24 C -0.112 4.112 25 C -0.107 4.107 26 C -0.153 4.153 27 H 0.396 0.604 28 H 0.101 0.899 29 H -0.283 1.283 30 H -0.301 1.301 31 H 0.150 0.850 32 H 0.160 0.840 33 H 0.155 0.845 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.393 0.607 47 H 0.064 0.936 48 H 0.068 0.932 49 H 0.079 0.921 50 H 0.074 0.926 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.697 4.123 7.785 8.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.192 4.192 3 Si 0.697 3.303 4 C -0.086 4.086 5 C -0.176 4.176 6 C -0.090 4.090 7 C -0.224 4.224 8 C 0.071 3.929 9 O -0.253 6.253 10 C -0.017 4.017 11 C -0.144 4.144 12 C -0.138 4.138 13 C 0.305 3.695 14 O -0.436 6.436 15 O -0.271 6.271 16 C -0.004 4.004 17 C -0.100 4.100 18 H 0.102 0.898 19 C -0.147 4.147 20 C -0.183 4.183 21 C 0.041 3.959 22 H 0.078 0.922 23 O -0.399 6.399 24 C -0.150 4.150 25 C -0.144 4.144 26 C -0.171 4.171 27 H 0.246 0.754 28 H 0.118 0.882 29 H -0.210 1.210 30 H -0.229 1.229 31 H 0.167 0.833 32 H 0.178 0.822 33 H 0.172 0.828 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.243 0.757 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.097 0.903 50 H 0.093 0.907 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.323 3.745 6.015 7.457 hybrid contribution -0.432 -0.907 -0.206 1.026 sum 1.891 2.838 5.809 6.736 Atomic orbital electron populations 1.86474 1.17317 1.82297 1.50448 1.25378 0.85315 1.11665 0.96881 0.93566 0.77748 0.74395 0.84623 1.20212 0.98216 0.93263 0.96954 1.21185 1.00948 1.00508 0.94923 1.21327 0.96865 0.93609 0.97238 1.21622 1.03831 0.96361 1.00578 1.19181 0.95769 0.82975 0.94987 1.86035 1.74909 1.20426 1.43887 1.22942 1.00123 0.92565 0.86045 1.21223 1.02421 0.93078 0.97708 1.21294 1.06213 0.85601 1.00733 1.24284 0.75251 0.91094 0.78868 1.90711 1.39026 1.76368 1.37523 1.86475 1.72319 1.23056 1.45201 1.23217 1.00493 0.77153 0.99584 1.21213 1.01616 0.94381 0.92828 0.89769 1.21508 1.00023 1.00286 0.92845 1.22207 1.02160 0.95132 0.98826 1.21918 0.97335 0.91105 0.85554 0.92180 1.86480 1.70029 1.65347 1.18033 1.21439 1.00637 1.00116 0.92788 1.21437 1.02379 0.92801 0.97817 1.20327 1.04424 0.94607 0.97788 0.75446 0.88170 1.20959 1.22888 0.83299 0.82234 0.82790 0.89414 0.89700 0.91637 0.91446 0.84279 0.84488 0.91378 0.91266 0.90694 0.91450 0.90472 0.91658 0.75709 0.91676 0.91353 0.90278 0.90746 0.86752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.47 12.83 -148.98 -1.91 -3.38 16 2 C -0.08 -0.13 2.80 71.24 0.20 0.07 16 3 Si 0.79 -1.56 29.80 68.60 2.04 0.48 16 4 C -0.09 -0.18 5.35 -19.88 -0.11 -0.29 16 5 C -0.16 0.31 8.67 22.28 0.19 0.50 16 6 C -0.07 0.25 10.04 22.25 0.22 0.48 16 7 C -0.21 0.32 9.04 22.37 0.20 0.52 16 8 C 0.12 0.47 6.69 22.51 0.15 0.62 16 9 O -0.34 -1.63 10.14 -92.38 -0.94 -2.56 16 10 C 0.06 -0.22 4.74 71.98 0.34 0.12 16 11 C -0.11 0.20 4.87 30.60 0.15 0.34 16 12 C -0.10 0.68 5.81 29.85 0.17 0.85 16 13 C 0.46 0.79 7.96 71.23 0.57 1.36 16 14 O -0.55 -5.38 15.73 21.94 0.35 -5.04 16 15 O -0.35 -0.18 9.76 -51.44 -0.50 -0.69 16 16 C 0.07 -0.01 4.84 71.98 0.35 0.34 16 17 C -0.08 0.24 2.44 -10.79 -0.03 0.21 16 18 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 19 C -0.11 0.40 5.10 30.60 0.16 0.55 16 20 C -0.15 0.49 5.54 30.59 0.17 0.66 16 21 C 0.10 -0.12 3.47 30.59 0.11 -0.02 16 22 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 23 O -0.59 -0.89 13.32 -148.98 -1.98 -2.87 16 24 C -0.11 0.09 5.57 30.58 0.17 0.26 16 25 C -0.11 0.35 5.20 30.58 0.16 0.51 16 26 C -0.15 -0.90 9.62 22.37 0.22 -0.69 16 27 H 0.40 -2.36 8.70 -74.06 -0.64 -3.01 16 28 H 0.10 0.36 7.96 -2.39 -0.02 0.34 16 29 H -0.28 -0.63 7.11 99.48 0.71 0.08 16 30 H -0.30 -1.70 7.11 99.48 0.71 -0.99 16 31 H 0.15 -1.03 4.90 -2.91 -0.01 -1.04 16 32 H 0.16 -1.51 8.06 -2.91 -0.02 -1.54 16 33 H 0.15 -1.11 6.30 -2.91 -0.02 -1.12 16 34 H 0.09 -0.70 7.65 -2.39 -0.02 -0.72 16 35 H 0.08 -0.64 7.67 -2.39 -0.02 -0.66 16 36 H 0.06 0.14 8.10 -2.39 -0.02 0.12 16 37 H 0.07 0.13 8.10 -2.39 -0.02 0.11 16 38 H 0.14 -1.66 8.14 -2.39 -0.02 -1.68 16 39 H 0.14 -1.58 8.14 -2.39 -0.02 -1.60 16 40 H 0.07 0.06 8.13 -2.39 -0.02 0.04 16 41 H 0.07 0.04 8.13 -2.39 -0.02 0.02 16 42 H 0.07 -0.25 7.82 -2.39 -0.02 -0.27 16 43 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 44 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 45 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 46 H 0.39 -2.50 9.08 -74.06 -0.67 -3.18 16 47 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 48 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 49 H 0.08 -0.32 8.14 -2.39 -0.02 -0.33 16 50 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 51 H 0.11 0.96 8.06 -2.91 -0.02 0.93 16 Total: 0.00 -23.75 411.78 0.10 -23.65 By element: Atomic # 1 Polarization: -15.65 SS G_CDS: -0.35 Total: -16.00 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 3.39 Total: 6.41 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -4.99 Total: -14.54 kcal Atomic # 14 Polarization: -1.56 SS G_CDS: 2.04 Total: 0.48 kcal Total: -23.75 0.10 -23.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_2308196_16737258.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.445 kcal (2) G-P(sol) polarization free energy of solvation -23.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds