Wall clock time and date at job start Sat Mar 6 2021 05:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99780 * 2 1 4 4 C 1.53005 * 112.85045 * 291.84380 * 3 2 1 5 5 F 1.39896 * 109.46900 * 65.65625 * 4 3 2 6 6 F 1.39895 * 109.46950 * 185.65914 * 4 3 2 7 7 F 1.39904 * 109.46932 * 305.65769 * 4 3 2 8 8 C 1.53783 * 113.61246 * 160.53705 * 3 2 1 9 9 C 1.53785 * 87.08022 * 270.88117 * 8 3 2 10 10 H 1.08997 * 113.68768 * 220.00577 * 9 8 3 11 11 C 1.52998 * 113.60909 * 89.11787 * 9 8 3 12 12 O 1.45205 * 109.47055 * 87.50211 * 11 9 8 13 13 C 1.34228 * 116.99912 * 179.97438 * 12 11 9 14 14 O 1.20833 * 119.99983 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00004 * 180.02562 * 13 12 11 16 16 C 1.53008 * 109.47109 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.46725 * 179.97438 * 16 15 13 18 18 O 1.42902 * 109.46873 * 179.97438 * 17 16 15 19 19 C 1.35896 * 117.00345 * 179.97438 * 18 17 16 20 20 C 1.38707 * 120.06101 * 179.97438 * 19 18 17 21 21 C 1.38160 * 119.94719 * 180.02562 * 20 19 18 22 22 C 1.50702 * 119.97197 * 180.02562 * 21 20 19 23 23 O 1.42902 * 109.47232 * 299.99761 * 22 21 20 24 24 Si 1.86306 * 109.47137 * 180.02562 * 22 21 20 25 25 C 1.38250 * 120.05675 * 0.02562 * 21 20 19 26 26 C 1.38285 * 120.11070 * 0.02562 * 25 21 20 27 27 C 1.38127 * 120.05506 * 359.67608 * 26 25 21 28 28 C 1.53776 * 87.08259 * 334.56731 * 9 8 3 29 29 H 1.09003 * 109.46999 * 66.30843 * 1 2 3 30 30 H 1.08994 * 109.47689 * 306.30668 * 1 2 3 31 31 H 1.08999 * 109.47059 * 186.30618 * 1 2 3 32 32 H 1.08996 * 113.61294 * 25.43611 * 8 3 2 33 33 H 1.09008 * 113.60964 * 156.33699 * 8 3 2 34 34 H 1.09004 * 109.47043 * 207.49828 * 11 9 8 35 35 H 1.08991 * 109.47533 * 327.49961 * 11 9 8 36 36 H 1.09004 * 109.46895 * 299.99289 * 15 13 12 37 37 H 1.08997 * 109.47556 * 59.99859 * 15 13 12 38 38 H 1.09004 * 109.46701 * 299.99456 * 16 15 13 39 39 H 1.08997 * 109.46988 * 59.99558 * 16 15 13 40 40 H 1.08998 * 109.47422 * 299.99860 * 17 16 15 41 41 H 1.08997 * 109.47467 * 60.00197 * 17 16 15 42 42 H 1.08002 * 120.02757 * 359.97438 * 20 19 18 43 43 H 1.08997 * 109.47133 * 59.99995 * 22 21 20 44 44 H 0.96696 * 113.99811 * 299.99925 * 23 22 21 45 45 H 1.48499 * 110.00100 * 58.67608 * 24 22 21 46 46 H 1.48498 * 109.99734 * 180.02562 * 24 22 21 47 47 H 1.07997 * 119.94216 * 180.02562 * 25 21 20 48 48 H 1.07998 * 119.97143 * 179.97438 * 26 25 21 49 49 H 1.07991 * 120.02709 * 180.32019 * 27 26 25 50 50 H 1.08998 * 113.61624 * 270.88452 * 28 9 8 51 51 H 1.08999 * 113.61511 * 139.97695 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7726 2.0616 -1.3087 5 9 0.4056 2.3200 -1.4564 6 9 2.4756 3.2708 -1.2829 7 9 2.2193 1.2854 -2.3835 8 6 3.4744 1.3279 0.4695 9 6 2.9317 1.5114 1.8967 10 1 3.5071 2.2165 2.4966 11 6 2.6631 0.1927 2.6244 12 8 3.8753 -0.2473 3.2919 13 6 3.8082 -1.3970 3.9815 14 8 2.7708 -2.0150 4.0263 15 6 5.0263 -1.9164 4.7008 16 6 4.6818 -3.2315 5.4029 17 6 5.9188 -3.7591 6.1326 18 8 5.5970 -4.9870 6.7890 19 6 6.5928 -5.5926 7.4878 20 6 6.3501 -6.7871 8.1498 21 6 7.3641 -7.4004 8.8600 22 6 7.1011 -8.6985 9.5790 23 8 6.0684 -8.5058 10.5477 24 14 8.6575 -9.2606 10.4350 25 6 8.6198 -6.8243 8.9117 26 6 8.8641 -5.6329 8.2535 27 6 7.8554 -5.0190 7.5370 28 6 1.6772 2.1281 1.2559 29 1 -0.3633 0.4129 -0.9411 30 1 -0.3634 0.6084 0.8281 31 1 -0.3633 -1.0214 0.1129 32 1 3.9958 0.3826 0.3187 33 1 4.0374 2.1862 0.1027 34 1 1.8746 0.3392 3.3626 35 1 2.3504 -0.5629 1.9038 36 1 5.8275 -2.0871 3.9817 37 1 5.3514 -1.1845 5.4401 38 1 3.8807 -3.0604 6.1221 39 1 4.3565 -3.9636 4.6639 40 1 6.7196 -3.9302 5.4133 41 1 6.2445 -3.0271 6.8717 42 1 5.3690 -7.2369 8.1107 43 1 6.7881 -9.4553 8.8597 44 1 6.2790 -7.8444 11.2208 45 1 9.1119 -8.2233 11.3955 46 1 8.4115 -10.5402 11.1472 47 1 9.4111 -7.3055 9.4671 48 1 9.8457 -5.1847 8.2958 49 1 8.0481 -4.0912 7.0189 50 1 1.7489 3.2051 1.1041 51 1 0.7476 1.8288 1.7401 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_2308196_17321610.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:43:59 Heat of formation + Delta-G solvation = -288.562702 kcal Electronic energy + Delta-G solvation = -37650.692864 eV Core-core repulsion = 31875.929586 eV Total energy + Delta-G solvation = -5774.763278 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.158 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -51.26779 -48.80800 -48.73904 -41.88197 -41.28226 -41.04949 -39.24431 -37.92378 -37.40784 -36.90289 -35.04564 -32.45410 -31.38132 -30.79405 -28.83150 -28.19173 -27.24139 -26.80257 -26.71408 -23.99761 -23.63443 -23.28004 -21.96346 -21.56885 -20.65365 -19.80360 -19.56520 -19.26569 -19.20851 -18.67864 -17.91835 -17.89751 -17.52525 -17.30899 -17.10297 -17.05944 -16.74997 -16.51353 -16.22253 -15.91715 -15.69403 -15.60897 -15.51645 -15.43339 -15.17565 -15.14215 -14.93014 -14.90055 -14.78808 -14.52848 -14.31415 -14.23906 -14.11062 -13.75716 -13.43528 -13.39343 -13.25712 -13.12412 -13.07241 -12.78948 -12.72110 -12.39088 -12.37267 -12.29709 -12.03948 -11.94601 -11.71295 -11.70949 -11.59480 -11.54961 -11.51372 -10.80530 -10.67899 -9.90479 -9.22938 -4.90451 0.23280 0.42821 1.14951 1.29712 1.46867 1.52046 1.62436 1.95693 2.06526 2.25742 2.55234 2.61607 2.69583 2.87417 3.26090 3.28433 3.40165 3.42742 3.57509 3.65716 3.74202 3.85146 3.85456 3.95338 4.09645 4.15038 4.17719 4.22700 4.26798 4.28389 4.33571 4.36808 4.38073 4.43652 4.48597 4.50064 4.55820 4.59283 4.62515 4.67401 4.69728 4.77009 4.81554 4.95107 5.00872 5.01762 5.11492 5.30075 5.40664 5.42156 5.47364 5.68532 5.76181 6.43820 6.46402 6.68331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.349 6.349 3 C 0.031 3.969 4 C 0.434 3.566 5 F -0.186 7.186 6 F -0.174 7.174 7 F -0.188 7.188 8 C -0.110 4.110 9 C -0.091 4.091 10 H 0.125 0.875 11 C 0.075 3.925 12 O -0.353 6.353 13 C 0.460 3.540 14 O -0.545 6.545 15 C -0.101 4.101 16 C -0.107 4.107 17 C 0.057 3.943 18 O -0.338 6.338 19 C 0.116 3.884 20 C -0.151 4.151 21 C -0.083 4.083 22 C -0.092 4.092 23 O -0.551 6.551 24 Si 0.781 3.219 25 C -0.160 4.160 26 C -0.073 4.073 27 C -0.205 4.205 28 C -0.138 4.138 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.129 0.871 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.386 0.614 45 H -0.278 1.278 46 H -0.305 1.305 47 H 0.147 0.853 48 H 0.159 0.841 49 H 0.155 0.845 50 H 0.130 0.870 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.807 4.927 0.919 8.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.267 6.267 3 C -0.012 4.012 4 C 0.380 3.620 5 F -0.168 7.168 6 F -0.155 7.155 7 F -0.170 7.170 8 C -0.147 4.147 9 C -0.109 4.109 10 H 0.144 0.856 11 C 0.001 3.999 12 O -0.269 6.269 13 C 0.305 3.695 14 O -0.435 6.435 15 C -0.138 4.138 16 C -0.144 4.144 17 C -0.017 4.017 18 O -0.252 6.252 19 C 0.071 3.929 20 C -0.170 4.170 21 C -0.083 4.083 22 C -0.200 4.200 23 O -0.359 6.359 24 Si 0.685 3.315 25 C -0.177 4.177 26 C -0.091 4.091 27 C -0.223 4.223 28 C -0.175 4.175 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.110 0.890 33 H 0.148 0.852 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.134 0.866 43 H 0.139 0.861 44 H 0.235 0.765 45 H -0.205 1.205 46 H -0.233 1.233 47 H 0.165 0.835 48 H 0.176 0.824 49 H 0.172 0.828 50 H 0.148 0.852 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.436 3.928 1.219 7.638 hybrid contribution -1.868 0.780 -0.040 2.024 sum 4.568 4.708 1.179 6.665 Atomic orbital electron populations 1.23314 0.78819 1.05036 1.02073 1.88076 1.22074 1.22745 1.93839 1.24248 1.01243 0.86364 0.89323 1.21522 0.73824 0.78473 0.88205 1.93162 1.32695 1.94396 1.96530 1.93178 1.78773 1.46891 1.96690 1.93189 1.89145 1.74996 1.59641 1.23321 0.90582 1.05874 0.94880 1.22042 0.97808 0.95805 0.95222 0.85649 1.23039 0.84609 0.96337 0.95903 1.86444 1.40241 1.39165 1.61065 1.24277 0.90988 0.78113 0.76090 1.90713 1.33933 1.58432 1.60407 1.21299 0.93692 0.97458 1.01370 1.21226 0.97448 0.96028 0.99745 1.22944 0.98205 0.83859 0.96681 1.86037 1.36773 1.38622 1.63795 1.19178 0.88081 0.92830 0.92788 1.20311 1.00374 0.95359 1.00982 1.20134 0.93757 0.96881 0.97574 1.25421 1.02625 0.97130 0.94790 1.86573 1.42723 1.64230 1.42344 0.93894 0.78600 0.76180 0.82779 1.21185 0.96107 0.97419 1.03026 1.21309 0.99887 0.94042 0.93842 1.21621 0.92229 1.03358 1.05133 1.23685 1.00006 1.01640 0.92154 0.92974 0.91258 0.87540 0.89004 0.85243 0.90820 0.90572 0.84378 0.84257 0.91536 0.91574 0.89487 0.89608 0.86627 0.86150 0.76476 1.20459 1.23309 0.83545 0.82359 0.82776 0.85230 0.88057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 10.28 113.37 1.17 1.16 16 2 O -0.35 -0.66 8.52 -148.98 -1.27 -1.93 16 3 C 0.03 -0.04 0.79 -10.26 -0.01 -0.05 16 4 C 0.43 0.88 2.66 71.98 0.19 1.08 16 5 F -0.19 -0.59 14.94 44.97 0.67 0.08 16 6 F -0.17 -0.18 15.72 44.97 0.71 0.52 16 7 F -0.19 -1.17 17.26 44.97 0.78 -0.39 16 8 C -0.11 0.46 6.92 31.12 0.22 0.68 16 9 C -0.09 0.51 4.21 -10.27 -0.04 0.47 16 10 H 0.13 -1.10 8.14 -2.39 -0.02 -1.12 16 11 C 0.07 -0.07 5.05 71.98 0.36 0.30 16 12 O -0.35 0.11 10.22 -51.40 -0.53 -0.42 16 13 C 0.46 0.59 7.96 71.23 0.57 1.15 16 14 O -0.54 -5.17 15.73 21.94 0.35 -4.82 16 15 C -0.10 0.72 5.81 29.85 0.17 0.90 16 16 C -0.11 0.23 4.87 30.60 0.15 0.38 16 17 C 0.06 -0.24 4.74 71.98 0.34 0.10 16 18 O -0.34 -1.51 10.14 -92.38 -0.94 -2.44 16 19 C 0.12 0.43 6.69 22.51 0.15 0.58 16 20 C -0.15 -0.83 9.55 22.36 0.21 -0.61 16 21 C -0.08 -0.15 5.39 -19.88 -0.11 -0.26 16 22 C -0.09 -0.11 2.82 71.24 0.20 0.10 16 23 O -0.55 -2.65 12.77 -148.98 -1.90 -4.55 16 24 Si 0.78 -1.50 29.79 68.60 2.04 0.54 16 25 C -0.16 0.29 8.67 22.28 0.19 0.48 16 26 C -0.07 0.25 10.04 22.25 0.22 0.47 16 27 C -0.20 0.35 9.04 22.37 0.20 0.56 16 28 C -0.14 0.84 6.62 31.12 0.21 1.05 16 29 H 0.05 -0.01 6.32 -2.39 -0.02 -0.03 16 30 H 0.07 -0.32 6.39 -2.39 -0.02 -0.33 16 31 H 0.11 -0.31 8.14 -2.39 -0.02 -0.33 16 32 H 0.09 -0.23 8.10 -2.39 -0.02 -0.25 16 33 H 0.13 -0.91 7.30 -2.38 -0.02 -0.93 16 34 H 0.07 -0.05 8.13 -2.38 -0.02 -0.07 16 35 H 0.08 0.20 6.11 -2.39 -0.01 0.19 16 36 H 0.14 -1.67 8.14 -2.39 -0.02 -1.69 16 37 H 0.14 -1.74 8.14 -2.39 -0.02 -1.76 16 38 H 0.07 0.11 8.10 -2.39 -0.02 0.09 16 39 H 0.07 0.12 8.10 -2.39 -0.02 0.10 16 40 H 0.09 -0.70 7.65 -2.39 -0.02 -0.72 16 41 H 0.09 -0.69 7.67 -2.39 -0.02 -0.71 16 42 H 0.12 0.91 8.06 -2.91 -0.02 0.89 16 43 H 0.12 0.04 7.96 -2.39 -0.02 0.02 16 44 H 0.39 -0.44 8.70 -74.06 -0.64 -1.08 16 45 H -0.28 -0.31 7.11 99.48 0.71 0.40 16 46 H -0.30 -1.83 7.11 99.48 0.71 -1.12 16 47 H 0.15 -0.90 4.87 -2.91 -0.01 -0.92 16 48 H 0.16 -1.47 8.06 -2.91 -0.02 -1.49 16 49 H 0.15 -1.14 6.30 -2.91 -0.02 -1.15 16 50 H 0.13 -1.14 7.69 -2.39 -0.02 -1.15 16 51 H 0.10 -0.72 6.48 -2.39 -0.02 -0.73 16 Total: 0.00 -23.46 425.96 4.69 -18.77 By element: Atomic # 1 Polarization: -14.29 SS G_CDS: 0.38 Total: -13.91 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 4.40 Total: 8.53 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -4.29 Total: -14.16 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 2.15 Total: 0.21 kcal Atomic # 14 Polarization: -1.50 SS G_CDS: 2.04 Total: 0.54 kcal Total: -23.46 4.69 -18.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_2308196_17321610.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -269.790 kcal (2) G-P(sol) polarization free energy of solvation -23.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -293.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -288.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds