Wall clock time and date at job start Sat Mar 6 2021 06:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86307 * 109.47014 * 2 1 4 4 C 1.86303 * 109.47265 * 240.00152 * 2 1 3 5 5 C 1.86297 * 109.47050 * 119.99951 * 2 1 3 6 6 O 1.45186 * 109.47322 * 60.00313 * 5 2 1 7 7 C 1.34232 * 117.00492 * 74.99855 * 6 5 2 8 8 O 1.20824 * 119.99458 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00659 * 180.02562 * 7 6 5 10 10 C 1.52992 * 109.47592 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 O 1.42898 * 109.47319 * 180.02562 * 11 10 9 13 13 C 1.35900 * 117.00172 * 179.97438 * 12 11 10 14 14 C 1.38710 * 120.05544 * 359.72769 * 13 12 11 15 15 C 1.38159 * 119.94311 * 179.72143 * 14 13 12 16 16 C 1.38250 * 120.05742 * 0.57011 * 15 14 13 17 17 C 1.38280 * 120.10833 * 359.68104 * 16 15 14 18 18 C 1.50697 * 119.97205 * 180.02562 * 17 16 15 19 19 O 1.42902 * 109.47393 * 245.02079 * 18 17 16 20 20 Si 1.86306 * 109.47148 * 5.02162 * 18 17 16 21 21 H 1.48504 * 109.46673 * 59.99962 * 20 18 17 22 22 H 1.48495 * 109.47180 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.46932 * 300.00295 * 20 18 17 24 24 C 1.38129 * 120.05716 * 0.04353 * 17 16 15 25 25 H 1.08995 * 109.47482 * 299.99930 * 1 2 3 26 26 H 1.09001 * 109.46885 * 60.00387 * 1 2 3 27 27 H 1.09005 * 109.46886 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.46889 * 179.97438 * 3 2 1 29 29 H 1.09008 * 109.47107 * 300.00245 * 3 2 1 30 30 H 1.08995 * 109.46939 * 59.99737 * 3 2 1 31 31 H 1.08998 * 109.46861 * 299.99917 * 4 2 1 32 32 H 1.08994 * 109.46972 * 59.99876 * 4 2 1 33 33 H 1.09000 * 109.46661 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.47168 * 299.99699 * 5 2 1 35 35 H 1.09002 * 109.46785 * 180.02562 * 5 2 1 36 36 H 1.09002 * 109.47210 * 59.99728 * 9 7 6 37 37 H 1.09001 * 109.46665 * 299.99987 * 9 7 6 38 38 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 39 39 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 40 40 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 41 41 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 42 42 H 1.08006 * 120.02494 * 359.97438 * 14 13 12 43 43 H 1.08006 * 119.97038 * 180.27439 * 15 14 13 44 44 H 1.08000 * 119.94133 * 179.70045 * 16 15 14 45 45 H 1.09005 * 109.47122 * 125.02014 * 18 17 16 46 46 H 0.96696 * 113.99487 * 59.99932 * 19 18 17 47 47 H 1.07998 * 120.02418 * 180.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5212 5 6 2.4840 -0.8782 1.5211 6 8 2.0001 -2.2471 1.5211 7 6 2.5943 -3.1036 0.6755 8 8 3.4895 -2.7221 -0.0407 9 6 2.1449 -4.5409 0.6193 10 6 2.9790 -5.2959 -0.4176 11 6 2.5232 -6.7553 -0.4742 12 8 3.3026 -7.4606 -1.4422 13 6 3.0233 -8.7790 -1.6172 14 6 2.0238 -9.3828 -0.8687 15 6 1.7379 -10.7219 -1.0526 16 6 2.4551 -11.4630 -1.9734 17 6 3.4556 -10.8646 -2.7171 18 6 4.2351 -11.6751 -3.7204 19 8 5.6009 -11.7575 -3.3082 20 14 3.5143 -13.3897 -3.8280 21 1 2.0950 -13.3040 -4.2563 22 1 4.2820 -14.1882 -4.8170 23 1 3.5910 -14.0433 -2.4968 24 6 3.7414 -9.5247 -2.5410 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.5739 1.7565 0.0005 29 1 2.1206 2.2704 -0.8900 30 1 2.1206 2.2703 0.8899 31 1 2.1207 -1.9058 -1.5211 32 1 2.1207 -0.3644 -2.4111 33 1 3.5741 -0.8777 -1.5213 34 1 2.1207 -0.3643 2.4111 35 1 3.5740 -0.8778 1.5213 36 1 1.0924 -4.5819 0.3391 37 1 2.2786 -5.0018 1.5980 38 1 4.0314 -5.2549 -0.1369 39 1 2.8458 -4.8350 -1.3963 40 1 1.4707 -6.7966 -0.7546 41 1 2.6567 -7.2158 0.5047 42 1 1.4666 -8.8055 -0.1456 43 1 0.9567 -11.1914 -0.4732 44 1 2.2334 -12.5108 -2.1122 45 1 4.1787 -11.1953 -4.6975 46 1 5.7266 -12.1746 -2.4450 47 1 4.5226 -9.0579 -3.1225 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_2308196_4858416.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:19:06 Heat of formation + Delta-G solvation = -172.115056 kcal Electronic energy + Delta-G solvation = -24863.095318 eV Core-core repulsion = 21135.057983 eV Total energy + Delta-G solvation = -3728.037335 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.54544 -41.21967 -39.22393 -37.57095 -37.24564 -35.09268 -32.46441 -31.34780 -29.83708 -29.19290 -28.50617 -28.37511 -27.44813 -26.72168 -23.86601 -23.60038 -21.95328 -21.51647 -19.21052 -18.61864 -17.97926 -17.90658 -17.57790 -17.18348 -17.11473 -16.79585 -16.16419 -15.62869 -15.36401 -14.99925 -14.90684 -14.48859 -14.39741 -14.23432 -14.11635 -13.97905 -13.87250 -13.60953 -13.49062 -13.38245 -13.26643 -13.11317 -13.08475 -12.97330 -12.76683 -12.56174 -12.36160 -12.31542 -12.15795 -11.89834 -11.72025 -11.51655 -11.45202 -10.94150 -10.79112 -10.46637 -10.41469 -9.91668 -9.22914 0.21895 0.41889 1.13166 1.17862 1.43121 1.43334 1.51049 1.52148 1.81420 1.86687 1.92565 2.28542 2.49980 2.68489 3.46187 3.54776 3.64944 3.70124 3.76724 3.87120 3.99044 4.10502 4.11577 4.16875 4.18325 4.21384 4.34624 4.41453 4.55970 4.61323 4.63939 4.66083 4.67241 4.69469 4.72879 4.84097 4.86799 4.92545 4.98283 5.04975 5.27257 5.37369 5.38661 5.43037 5.44575 5.47418 5.69927 5.71240 6.40185 6.54446 6.78608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 1.001 2.999 3 C -0.447 4.447 4 C -0.436 4.436 5 C -0.239 4.239 6 O -0.338 6.338 7 C 0.445 3.555 8 O -0.489 6.489 9 C -0.112 4.112 10 C -0.111 4.111 11 C 0.060 3.940 12 O -0.311 6.311 13 C 0.132 3.868 14 C -0.205 4.205 15 C -0.073 4.073 16 C -0.165 4.165 17 C -0.081 4.081 18 C -0.082 4.082 19 O -0.536 6.536 20 Si 0.955 3.045 21 H -0.250 1.250 22 H -0.254 1.254 23 H -0.252 1.252 24 C -0.123 4.123 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.377 0.623 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.625 -0.203 2.750 4.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.196 2.804 3 C -0.555 4.555 4 C -0.544 4.544 5 C -0.358 4.358 6 O -0.254 6.254 7 C 0.288 3.712 8 O -0.376 6.376 9 C -0.149 4.149 10 C -0.148 4.148 11 C -0.016 4.016 12 O -0.224 6.224 13 C 0.087 3.913 14 C -0.224 4.224 15 C -0.091 4.091 16 C -0.183 4.183 17 C -0.082 4.082 18 C -0.193 4.193 19 O -0.342 6.342 20 Si 0.778 3.222 21 H -0.174 1.174 22 H -0.178 1.178 23 H -0.176 1.176 24 C -0.141 4.141 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.127 0.873 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.224 0.776 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.448 -0.481 1.869 3.952 hybrid contribution -0.064 0.341 0.927 0.990 sum -3.513 -0.139 2.796 4.492 Atomic orbital electron populations 1.26069 1.20109 1.04634 1.04597 0.79674 0.67574 0.67131 0.65980 1.26049 1.06515 1.18125 1.04838 1.26239 1.07081 1.07180 1.13883 1.28343 1.05239 0.84112 1.18107 1.86417 1.59244 1.21261 1.58450 1.23551 0.80866 0.89140 0.77669 1.90701 1.28683 1.78158 1.40049 1.21204 1.02629 0.88482 1.02635 1.21309 1.01268 0.91921 1.00319 1.22769 0.95086 0.92085 0.91613 1.86072 1.58904 1.19256 1.58211 1.19015 0.94238 0.83140 0.94954 1.21315 1.00919 0.96714 1.03414 1.20892 0.98306 0.93214 0.96678 1.20973 0.98260 1.00039 0.98993 1.20106 0.96503 0.94058 0.97484 1.25044 0.85866 1.09225 0.99161 1.86534 1.22722 1.84016 1.40878 0.85607 0.79930 0.75372 0.81314 1.17368 1.17825 1.17559 1.20274 1.01388 0.92796 0.99663 0.91078 0.90972 0.91131 0.90970 0.90646 0.91069 0.91612 0.91896 0.90405 0.87337 0.90175 0.87219 0.87255 0.89521 0.89456 0.91521 0.91560 0.85200 0.85292 0.86021 0.86250 0.77611 0.84615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.55 8.65 101.05 0.87 1.43 16 2 Si 1.00 -1.73 12.12 -169.99 -2.06 -3.79 16 3 C -0.45 0.64 8.65 101.05 0.87 1.51 16 4 C -0.44 -0.29 7.10 101.05 0.72 0.43 16 5 C -0.24 0.16 5.40 101.05 0.55 0.70 16 6 O -0.34 -0.17 9.92 -39.26 -0.39 -0.56 16 7 C 0.45 0.24 6.74 36.00 0.24 0.48 16 8 O -0.49 -1.40 11.66 -18.75 -0.22 -1.62 16 9 C -0.11 0.29 5.81 -27.89 -0.16 0.13 16 10 C -0.11 0.13 4.87 -26.74 -0.13 0.00 16 11 C 0.06 -0.09 4.74 37.16 0.18 0.09 16 12 O -0.31 -0.59 10.14 -19.43 -0.20 -0.79 16 13 C 0.13 0.24 6.69 -39.22 -0.26 -0.02 16 14 C -0.20 -0.06 9.04 -39.44 -0.36 -0.42 16 15 C -0.07 0.00 10.04 -39.61 -0.40 -0.40 16 16 C -0.16 -0.07 8.67 -39.56 -0.34 -0.41 16 17 C -0.08 -0.08 5.35 -104.65 -0.56 -0.64 16 18 C -0.08 0.01 2.80 36.00 0.10 0.11 16 19 O -0.54 -0.38 12.83 -35.23 -0.45 -0.84 16 20 Si 0.96 -0.53 25.14 -169.99 -4.27 -4.80 16 21 H -0.25 0.00 7.11 56.52 0.40 0.40 16 22 H -0.25 -0.23 7.11 56.52 0.40 0.17 16 23 H -0.25 0.13 7.04 56.52 0.40 0.53 16 24 C -0.12 -0.24 9.62 -39.43 -0.38 -0.62 16 25 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 26 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 27 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 28 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 29 H 0.07 -0.10 7.96 -51.92 -0.41 -0.51 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.06 0.09 6.28 -51.93 -0.33 -0.23 16 32 H 0.06 0.01 7.96 -51.93 -0.41 -0.40 16 33 H 0.08 0.15 7.43 -51.93 -0.39 -0.23 16 34 H 0.11 -0.25 7.96 -51.93 -0.41 -0.67 16 35 H 0.08 -0.01 7.52 -51.93 -0.39 -0.40 16 36 H 0.11 -0.50 8.14 -51.93 -0.42 -0.92 16 37 H 0.11 -0.46 8.14 -51.93 -0.42 -0.89 16 38 H 0.09 0.01 8.10 -51.93 -0.42 -0.41 16 39 H 0.09 -0.01 8.10 -51.93 -0.42 -0.43 16 40 H 0.07 -0.19 7.68 -51.93 -0.40 -0.58 16 41 H 0.07 -0.18 7.65 -51.93 -0.40 -0.58 16 42 H 0.13 -0.24 6.30 -52.48 -0.33 -0.57 16 43 H 0.13 -0.28 8.06 -52.48 -0.42 -0.71 16 44 H 0.12 -0.11 4.86 -52.49 -0.26 -0.36 16 45 H 0.12 -0.10 7.96 -51.93 -0.41 -0.51 16 46 H 0.38 -0.95 8.70 45.56 0.40 -0.55 16 47 H 0.14 0.27 8.06 -52.49 -0.42 -0.15 16 LS Contribution 383.91 15.07 5.79 5.79 Total: 0.00 -6.80 383.91 -8.00 -14.80 By element: Atomic # 1 Polarization: -3.43 SS G_CDS: -7.14 Total: -10.57 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 0.94 Total: 2.37 kcal Atomic # 8 Polarization: -2.55 SS G_CDS: -1.26 Total: -3.80 kcal Atomic # 14 Polarization: -2.26 SS G_CDS: -6.33 Total: -8.59 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -6.80 -8.00 -14.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_2308196_4858416.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.313 kcal (2) G-P(sol) polarization free energy of solvation -6.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds