Wall clock time and date at job start Sat Mar 6 2021 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86307 * 109.47014 * 2 1 4 4 C 1.86303 * 109.47265 * 240.00152 * 2 1 3 5 5 C 1.86297 * 109.47050 * 119.99951 * 2 1 3 6 6 O 1.45186 * 109.47322 * 60.00313 * 5 2 1 7 7 C 1.34232 * 117.00492 * 74.99855 * 6 5 2 8 8 O 1.20824 * 119.99458 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00659 * 180.02562 * 7 6 5 10 10 C 1.52992 * 109.47592 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 O 1.42898 * 109.47319 * 180.02562 * 11 10 9 13 13 C 1.35900 * 117.00172 * 179.97438 * 12 11 10 14 14 C 1.38710 * 120.05544 * 359.72769 * 13 12 11 15 15 C 1.38159 * 119.94311 * 179.72143 * 14 13 12 16 16 C 1.38250 * 120.05742 * 0.57011 * 15 14 13 17 17 C 1.38280 * 120.10833 * 359.68104 * 16 15 14 18 18 C 1.50697 * 119.97205 * 180.02562 * 17 16 15 19 19 O 1.42902 * 109.47393 * 245.02079 * 18 17 16 20 20 Si 1.86306 * 109.47148 * 5.02162 * 18 17 16 21 21 H 1.48504 * 109.46673 * 59.99962 * 20 18 17 22 22 H 1.48495 * 109.47180 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.46932 * 300.00295 * 20 18 17 24 24 C 1.38129 * 120.05716 * 0.04353 * 17 16 15 25 25 H 1.08995 * 109.47482 * 299.99930 * 1 2 3 26 26 H 1.09001 * 109.46885 * 60.00387 * 1 2 3 27 27 H 1.09005 * 109.46886 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.46889 * 179.97438 * 3 2 1 29 29 H 1.09008 * 109.47107 * 300.00245 * 3 2 1 30 30 H 1.08995 * 109.46939 * 59.99737 * 3 2 1 31 31 H 1.08998 * 109.46861 * 299.99917 * 4 2 1 32 32 H 1.08994 * 109.46972 * 59.99876 * 4 2 1 33 33 H 1.09000 * 109.46661 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.47168 * 299.99699 * 5 2 1 35 35 H 1.09002 * 109.46785 * 180.02562 * 5 2 1 36 36 H 1.09002 * 109.47210 * 59.99728 * 9 7 6 37 37 H 1.09001 * 109.46665 * 299.99987 * 9 7 6 38 38 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 39 39 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 40 40 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 41 41 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 42 42 H 1.08006 * 120.02494 * 359.97438 * 14 13 12 43 43 H 1.08006 * 119.97038 * 180.27439 * 15 14 13 44 44 H 1.08000 * 119.94133 * 179.70045 * 16 15 14 45 45 H 1.09005 * 109.47122 * 125.02014 * 18 17 16 46 46 H 0.96696 * 113.99487 * 59.99932 * 19 18 17 47 47 H 1.07998 * 120.02418 * 180.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5212 5 6 2.4840 -0.8782 1.5211 6 8 2.0001 -2.2471 1.5211 7 6 2.5943 -3.1036 0.6755 8 8 3.4895 -2.7221 -0.0407 9 6 2.1449 -4.5409 0.6193 10 6 2.9790 -5.2959 -0.4176 11 6 2.5232 -6.7553 -0.4742 12 8 3.3026 -7.4606 -1.4422 13 6 3.0233 -8.7790 -1.6172 14 6 2.0238 -9.3828 -0.8687 15 6 1.7379 -10.7219 -1.0526 16 6 2.4551 -11.4630 -1.9734 17 6 3.4556 -10.8646 -2.7171 18 6 4.2351 -11.6751 -3.7204 19 8 5.6009 -11.7575 -3.3082 20 14 3.5143 -13.3897 -3.8280 21 1 2.0950 -13.3040 -4.2563 22 1 4.2820 -14.1882 -4.8170 23 1 3.5910 -14.0433 -2.4968 24 6 3.7414 -9.5247 -2.5410 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.5739 1.7565 0.0005 29 1 2.1206 2.2704 -0.8900 30 1 2.1206 2.2703 0.8899 31 1 2.1207 -1.9058 -1.5211 32 1 2.1207 -0.3644 -2.4111 33 1 3.5741 -0.8777 -1.5213 34 1 2.1207 -0.3643 2.4111 35 1 3.5740 -0.8778 1.5213 36 1 1.0924 -4.5819 0.3391 37 1 2.2786 -5.0018 1.5980 38 1 4.0314 -5.2549 -0.1369 39 1 2.8458 -4.8350 -1.3963 40 1 1.4707 -6.7966 -0.7546 41 1 2.6567 -7.2158 0.5047 42 1 1.4666 -8.8055 -0.1456 43 1 0.9567 -11.1914 -0.4732 44 1 2.2334 -12.5108 -2.1122 45 1 4.1787 -11.1953 -4.6975 46 1 5.7266 -12.1746 -2.4450 47 1 4.5226 -9.0579 -3.1225 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_2308196_4858416.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:19:05 Heat of formation + Delta-G solvation = -165.169208 kcal Electronic energy + Delta-G solvation = -24862.794124 eV Core-core repulsion = 21135.057983 eV Total energy + Delta-G solvation = -3727.736140 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.56058 -41.22891 -39.22544 -37.58802 -37.26140 -35.02808 -32.46263 -31.34137 -29.77499 -29.12708 -28.40675 -28.36131 -27.37422 -26.69830 -23.82323 -23.60558 -21.93726 -21.46273 -19.21086 -18.61755 -17.98739 -17.86589 -17.56788 -17.16548 -17.09012 -16.79370 -16.15883 -15.63145 -15.28331 -14.97325 -14.88516 -14.44913 -14.37931 -14.21992 -14.04819 -13.94066 -13.79399 -13.52786 -13.41096 -13.27298 -13.23955 -13.08845 -13.06226 -12.93677 -12.73536 -12.52540 -12.31251 -12.27802 -12.12354 -11.88420 -11.62526 -11.50752 -11.49311 -10.85323 -10.76653 -10.46238 -10.36999 -9.92800 -9.25616 0.21010 0.39011 1.16099 1.19045 1.47315 1.51825 1.54461 1.60827 1.89696 1.90601 2.00189 2.34754 2.56371 2.67177 3.51807 3.63749 3.69184 3.83680 3.84872 3.94527 4.08252 4.19433 4.21340 4.26168 4.33452 4.35521 4.44909 4.55451 4.59071 4.69902 4.70892 4.74556 4.76182 4.79257 4.81357 4.82633 4.87748 4.95381 4.98699 5.11281 5.26973 5.36676 5.42879 5.44035 5.52511 5.59582 5.64151 5.72763 6.41590 6.68331 6.78274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.063 2.937 3 C -0.455 4.455 4 C -0.455 4.455 5 C -0.257 4.257 6 O -0.341 6.341 7 C 0.439 3.561 8 O -0.521 6.521 9 C -0.106 4.106 10 C -0.105 4.105 11 C 0.057 3.943 12 O -0.335 6.335 13 C 0.118 3.882 14 C -0.206 4.206 15 C -0.074 4.074 16 C -0.174 4.174 17 C -0.084 4.084 18 C -0.088 4.088 19 O -0.554 6.554 20 Si 0.994 3.006 21 H -0.255 1.255 22 H -0.277 1.277 23 H -0.247 1.247 24 C -0.146 4.146 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.128 0.872 35 H 0.070 0.930 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.154 0.846 43 H 0.155 0.845 44 H 0.135 0.865 45 H 0.120 0.880 46 H 0.389 0.611 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.459 -0.546 4.287 6.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.254 2.746 3 C -0.563 4.563 4 C -0.560 4.560 5 C -0.374 4.374 6 O -0.257 6.257 7 C 0.284 3.716 8 O -0.410 6.410 9 C -0.144 4.144 10 C -0.143 4.143 11 C -0.018 4.018 12 O -0.250 6.250 13 C 0.072 3.928 14 C -0.225 4.225 15 C -0.092 4.092 16 C -0.191 4.191 17 C -0.085 4.085 18 C -0.197 4.197 19 O -0.361 6.361 20 Si 0.817 3.183 21 H -0.179 1.179 22 H -0.203 1.203 23 H -0.171 1.171 24 C -0.165 4.165 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.146 0.854 35 H 0.088 0.912 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.171 0.829 43 H 0.172 0.828 44 H 0.152 0.848 45 H 0.138 0.862 46 H 0.238 0.762 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.275 -0.832 3.414 6.338 hybrid contribution 0.546 0.470 0.429 0.839 sum -4.729 -0.362 3.843 6.104 Atomic orbital electron populations 1.26128 1.20142 1.04696 1.05080 0.78732 0.66734 0.65808 0.63290 1.26132 1.06341 1.18491 1.05376 1.26539 1.05928 1.07258 1.16306 1.28621 1.04864 0.84028 1.19924 1.86413 1.59212 1.21713 1.58312 1.24206 0.80305 0.90208 0.76927 1.90697 1.30180 1.78859 1.41276 1.21295 1.03518 0.86209 1.03332 1.21213 1.00604 0.92572 0.99908 1.22950 0.95632 0.91305 0.91899 1.86040 1.60001 1.19603 1.59322 1.19194 0.94920 0.83220 0.95432 1.21590 1.00384 0.97129 1.03355 1.21258 0.98469 0.93125 0.96374 1.21209 0.98103 1.00808 0.99024 1.20214 0.96824 0.93703 0.97755 1.25197 0.85534 1.09923 0.99062 1.86495 1.23290 1.84372 1.41932 0.85055 0.78760 0.73870 0.80576 1.17898 1.20262 1.17061 1.20350 1.01946 0.93622 1.00555 0.90242 0.90845 0.91296 0.91392 0.90575 0.90062 0.92641 0.91819 0.92304 0.85395 0.91166 0.84598 0.84861 0.91421 0.91261 0.89666 0.89773 0.82879 0.82764 0.84751 0.86215 0.76184 0.85910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.48 8.65 113.37 0.98 2.46 16 2 Si 1.06 -3.47 12.12 68.60 0.83 -2.64 16 3 C -0.46 1.38 8.65 113.37 0.98 2.36 16 4 C -0.46 -1.44 7.10 113.37 0.81 -0.63 16 5 C -0.26 0.32 5.40 113.37 0.61 0.93 16 6 O -0.34 -0.29 9.92 -51.43 -0.51 -0.81 16 7 C 0.44 0.73 6.74 71.24 0.48 1.21 16 8 O -0.52 -3.99 11.66 21.97 0.26 -3.74 16 9 C -0.11 0.61 5.81 29.84 0.17 0.79 16 10 C -0.11 0.15 4.87 30.59 0.15 0.30 16 11 C 0.06 -0.18 4.74 71.98 0.34 0.16 16 12 O -0.34 -1.66 10.14 -92.43 -0.94 -2.60 16 13 C 0.12 0.52 6.69 22.50 0.15 0.67 16 14 C -0.21 0.08 9.04 22.36 0.20 0.28 16 15 C -0.07 0.11 10.04 22.25 0.22 0.33 16 16 C -0.17 -0.05 8.67 22.28 0.19 0.14 16 17 C -0.08 -0.22 5.35 -19.88 -0.11 -0.33 16 18 C -0.09 -0.06 2.80 71.23 0.20 0.14 16 19 O -0.55 -1.39 12.83 -148.98 -1.91 -3.30 16 20 Si 0.99 -1.10 25.14 68.60 1.72 0.62 16 21 H -0.25 0.10 7.11 99.48 0.71 0.81 16 22 H -0.28 -0.71 7.11 99.48 0.71 0.00 16 23 H -0.25 0.49 7.04 99.48 0.70 1.19 16 24 C -0.15 -0.82 9.62 22.37 0.22 -0.61 16 25 H 0.08 -0.36 7.96 -2.39 -0.02 -0.38 16 26 H 0.07 -0.24 7.96 -2.39 -0.02 -0.25 16 27 H 0.07 -0.18 7.96 -2.38 -0.02 -0.20 16 28 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 29 H 0.08 -0.22 7.96 -2.38 -0.02 -0.24 16 30 H 0.08 -0.39 7.96 -2.39 -0.02 -0.41 16 31 H 0.05 0.27 6.28 -2.39 -0.02 0.26 16 32 H 0.06 0.13 7.96 -2.39 -0.02 0.11 16 33 H 0.06 0.40 7.43 -2.39 -0.02 0.38 16 34 H 0.13 -0.72 7.96 -2.39 -0.02 -0.74 16 35 H 0.07 0.06 7.52 -2.39 -0.02 0.04 16 36 H 0.14 -1.47 8.14 -2.39 -0.02 -1.49 16 37 H 0.13 -1.37 8.14 -2.39 -0.02 -1.39 16 38 H 0.07 0.15 8.10 -2.39 -0.02 0.13 16 39 H 0.07 0.14 8.10 -2.39 -0.02 0.12 16 40 H 0.09 -0.59 7.68 -2.39 -0.02 -0.61 16 41 H 0.08 -0.57 7.65 -2.39 -0.02 -0.59 16 42 H 0.15 -0.90 6.30 -2.91 -0.02 -0.92 16 43 H 0.15 -1.07 8.06 -2.91 -0.02 -1.09 16 44 H 0.14 -0.39 4.86 -2.91 -0.01 -0.40 16 45 H 0.12 -0.02 7.96 -2.38 -0.02 -0.04 16 46 H 0.39 -1.66 8.70 -74.06 -0.64 -2.30 16 47 H 0.12 0.86 8.06 -2.91 -0.02 0.84 16 Total: 0.00 -17.67 383.91 6.11 -11.56 By element: Atomic # 1 Polarization: -8.37 SS G_CDS: 1.05 Total: -7.31 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 5.60 Total: 8.21 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -3.10 Total: -10.44 kcal Atomic # 14 Polarization: -4.58 SS G_CDS: 2.56 Total: -2.02 kcal Total: -17.67 6.11 -11.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_2308196_4858416.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.607 kcal (2) G-P(sol) polarization free energy of solvation -17.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds