Wall clock time and date at job start Sat Mar 6 2021 10:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36640 * 126.64515 * 2 1 4 4 C 1.46471 * 125.99911 * 359.97438 * 3 2 1 5 5 O 1.21614 * 119.99620 * 0.02562 * 4 3 2 6 6 O 1.34899 * 120.00024 * 179.97438 * 4 3 2 7 7 C 1.45196 * 116.99912 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47016 * 180.02562 * 7 6 4 9 9 H 1.08992 * 112.85352 * 45.32214 * 8 7 6 10 10 C 1.53784 * 113.61490 * 176.53111 * 8 7 6 11 11 C 1.53777 * 87.08262 * 139.97324 * 10 8 7 12 12 H 1.09004 * 113.61138 * 89.11497 * 11 10 8 13 13 O 1.42901 * 113.61396 * 219.93217 * 11 10 8 14 14 C 1.53788 * 113.60796 * 274.12959 * 8 7 6 15 15 O 1.34946 * 108.00586 * 179.76102 * 3 2 1 16 16 C 1.33909 * 109.37727 * 0.39836 * 15 3 2 17 17 C 1.50701 * 125.60838 * 179.86422 * 16 15 3 18 18 O 1.42903 * 109.46878 * 269.69114 * 17 16 15 19 19 C 1.35904 * 116.99628 * 179.97438 * 18 17 16 20 20 C 1.38730 * 120.05544 * 359.73068 * 19 18 17 21 21 C 1.38147 * 119.94222 * 179.74118 * 20 19 18 22 22 C 1.38271 * 120.05563 * 0.50991 * 21 20 19 23 23 C 1.50697 * 119.94588 * 179.74356 * 22 21 20 24 24 O 1.42898 * 109.47360 * 245.01755 * 23 22 21 25 25 Si 1.86302 * 109.46986 * 5.02122 * 23 22 21 26 26 C 1.38267 * 120.11057 * 359.76343 * 22 21 20 27 27 C 1.38151 * 120.05677 * 359.97438 * 26 22 21 28 28 C 1.35176 * 108.78429 * 359.59923 * 16 15 3 29 29 H 1.09001 * 109.46742 * 269.97511 * 1 2 3 30 30 H 1.08993 * 109.46788 * 29.97280 * 1 2 3 31 31 H 1.09004 * 109.46868 * 149.97656 * 1 2 3 32 32 H 1.08996 * 109.47006 * 299.99710 * 7 6 4 33 33 H 1.08996 * 109.47231 * 59.99719 * 7 6 4 34 34 H 1.08999 * 113.60472 * 254.52480 * 10 8 7 35 35 H 1.09000 * 113.61329 * 25.33672 * 10 8 7 36 36 H 0.96696 * 114.00014 * 180.02562 * 13 11 10 37 37 H 1.08999 * 113.61649 * 334.57434 * 14 8 7 38 38 H 1.09006 * 113.61263 * 105.47258 * 14 8 7 39 39 H 1.09002 * 109.47060 * 29.69244 * 17 16 15 40 40 H 1.09001 * 109.47380 * 149.69332 * 17 16 15 41 41 H 1.07997 * 120.03088 * 359.97438 * 20 19 18 42 42 H 1.07999 * 119.97444 * 180.22577 * 21 20 19 43 43 H 1.08998 * 109.47394 * 125.01822 * 23 22 21 44 44 H 0.96708 * 113.99788 * 59.99807 * 24 23 22 45 45 H 1.48505 * 109.99592 * 180.02562 * 25 23 22 46 46 H 1.48500 * 109.99909 * 301.31495 * 25 23 22 47 47 H 1.08003 * 119.97499 * 179.97438 * 26 22 21 48 48 H 1.07997 * 120.02828 * 179.97438 * 27 26 22 49 49 H 1.07995 * 126.43224 * 180.26168 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3226 1.0963 0.0000 4 6 1.8857 2.4943 -0.0005 5 8 0.6990 2.7605 -0.0006 6 8 2.7995 3.4866 0.0001 7 6 2.2945 4.8479 0.0001 8 6 3.4695 5.8278 0.0001 9 1 4.2469 5.5566 -0.7140 10 6 3.0418 7.3025 -0.0851 11 6 4.1539 7.6024 0.9337 12 1 5.1195 7.8167 0.4755 13 8 3.7816 8.5667 1.9203 14 6 4.0074 6.1443 1.4056 15 8 3.6013 0.6650 0.0054 16 6 3.6186 -0.6739 0.0000 17 6 4.8550 -1.5355 0.0004 18 8 5.2459 -1.8083 -1.3468 19 6 6.3517 -2.5782 -1.5244 20 6 7.0493 -3.0565 -0.4248 21 6 8.1699 -3.8433 -0.6080 22 6 8.6025 -4.1455 -1.8861 23 6 9.8285 -4.9993 -2.0831 24 8 10.8526 -4.2247 -2.7103 25 14 10.4343 -5.6070 -0.4294 26 6 7.9122 -3.6653 -2.9837 27 6 6.7878 -2.8825 -2.8058 28 6 2.3445 -1.1257 0.0000 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3632 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6868 5.0099 -0.8902 33 1 1.6859 5.0096 0.8897 34 1 3.2135 7.7509 -1.0637 35 1 2.0374 7.4886 0.2954 36 1 4.4771 8.7598 2.5638 37 1 3.2682 6.0133 2.1959 38 1 4.9576 5.6591 1.6290 39 1 5.6619 -1.0128 0.5142 40 1 4.6443 -2.4733 0.5145 41 1 6.7145 -2.8170 0.5737 42 1 8.7113 -4.2189 0.2477 43 1 9.5798 -5.8521 -2.7147 44 1 11.1245 -3.4477 -2.2029 45 1 11.6436 -6.4498 -0.6101 46 1 10.7467 -4.4536 0.4522 47 1 8.2522 -3.9024 -3.9810 48 1 6.2492 -2.5074 -3.6634 49 1 2.0304 -2.1590 0.0002 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_3706294_11354868.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 10:46:21 Heat of formation + Delta-G solvation = -124.575514 kcal Electronic energy + Delta-G solvation = -32589.943491 eV Core-core repulsion = 27838.367782 eV Total energy + Delta-G solvation = -4751.575709 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.154 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -44.06108 -41.59813 -41.28110 -40.25717 -39.26812 -37.87919 -37.31037 -36.05083 -35.34402 -33.32574 -32.08995 -31.58374 -30.15426 -28.93910 -28.21661 -26.79929 -26.23011 -24.49051 -23.75913 -23.00677 -22.70119 -22.27106 -21.10615 -20.56813 -19.49918 -19.43452 -18.70426 -18.47058 -18.06615 -17.99998 -17.40025 -17.06453 -16.94091 -16.61583 -16.40887 -16.21706 -15.92260 -15.66362 -15.43611 -15.11051 -14.88830 -14.65993 -14.47730 -14.37022 -14.24660 -14.16841 -13.90069 -13.80567 -13.67013 -13.52378 -13.49587 -13.46380 -12.97840 -12.82218 -12.48396 -12.31193 -12.27480 -12.13582 -12.07838 -11.87208 -11.72319 -11.59901 -11.28551 -10.88837 -10.78648 -10.57634 -10.02749 -9.95025 -9.24848 -4.90613 -0.54028 0.27769 0.31919 0.80622 1.01521 1.34120 1.56598 1.60692 1.62806 1.98493 2.32608 2.65408 3.12664 3.26535 3.36008 3.45917 3.46527 3.50495 3.57258 3.71386 3.78157 3.80774 3.88632 3.93974 3.98816 4.05326 4.08835 4.13084 4.16806 4.27570 4.31551 4.38034 4.45274 4.49194 4.56406 4.58843 4.67995 4.70009 4.71441 4.74494 4.88460 4.90630 4.95195 4.98475 5.05320 5.07752 5.16432 5.26492 5.26873 5.33242 5.50900 5.61315 5.69878 6.27837 6.36963 6.50809 6.84671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.070 4.070 3 C -0.091 4.091 4 C 0.552 3.448 5 O -0.502 6.502 6 O -0.351 6.351 7 C 0.076 3.924 8 C -0.107 4.107 9 H 0.114 0.886 10 C -0.121 4.121 11 C 0.077 3.923 12 H 0.103 0.897 13 O -0.581 6.581 14 C -0.164 4.164 15 O -0.159 6.159 16 C 0.022 3.978 17 C 0.133 3.867 18 O -0.327 6.327 19 C 0.125 3.875 20 C -0.201 4.201 21 C -0.079 4.079 22 C -0.157 4.157 23 C -0.080 4.080 24 O -0.551 6.551 25 Si 0.769 3.231 26 C -0.060 4.060 27 C -0.162 4.162 28 C -0.185 4.185 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.396 0.604 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.139 0.861 41 H 0.160 0.840 42 H 0.149 0.851 43 H 0.123 0.877 44 H 0.385 0.615 45 H -0.308 1.308 46 H -0.280 1.280 47 H 0.135 0.865 48 H 0.132 0.868 49 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.113 -3.384 3.398 4.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.072 4.072 3 C -0.141 4.141 4 C 0.398 3.602 5 O -0.393 6.393 6 O -0.267 6.267 7 C 0.003 3.997 8 C -0.125 4.125 9 H 0.132 0.868 10 C -0.159 4.159 11 C 0.018 3.982 12 H 0.120 0.880 13 O -0.389 6.389 14 C -0.202 4.202 15 O -0.055 6.055 16 C -0.030 4.030 17 C 0.059 3.941 18 O -0.241 6.241 19 C 0.080 3.920 20 C -0.220 4.220 21 C -0.096 4.096 22 C -0.157 4.157 23 C -0.189 4.189 24 O -0.359 6.359 25 Si 0.675 3.325 26 C -0.078 4.078 27 C -0.181 4.181 28 C -0.203 4.203 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.246 0.754 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.119 0.881 40 H 0.157 0.843 41 H 0.177 0.823 42 H 0.166 0.834 43 H 0.140 0.860 44 H 0.234 0.766 45 H -0.237 1.237 46 H -0.206 1.206 47 H 0.153 0.847 48 H 0.150 0.850 49 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 0.920 -3.415 3.050 4.670 hybrid contribution 0.860 1.271 -0.144 1.541 sum 1.780 -2.145 2.906 4.026 Atomic orbital electron populations 1.20577 0.86597 1.04446 1.04023 1.21061 0.98699 0.90548 0.96867 1.20627 0.82401 0.91796 1.19272 1.19258 0.83871 0.84003 0.73095 1.90919 1.17437 1.83479 1.47428 1.86645 1.39276 1.17238 1.83563 1.23334 0.97272 0.75838 1.03258 1.22370 0.97498 0.93029 0.99592 0.86793 1.23083 0.99792 0.92921 1.00055 1.23406 0.98455 0.86585 0.89744 0.87973 1.86482 1.45673 1.62310 1.44471 1.23795 1.02447 0.97509 0.96410 1.84070 1.27925 1.22819 1.70711 1.22654 0.97505 0.80047 1.02770 1.21321 0.91532 0.98318 0.82887 1.86103 1.42425 1.66541 1.29062 1.19097 0.86466 0.91683 0.94735 1.21477 0.98429 1.03132 0.98937 1.21080 0.95850 0.96054 0.96620 1.20261 0.99082 1.02672 0.93721 1.25193 0.86746 0.96244 1.10721 1.86576 1.56317 1.43119 1.49916 0.94127 0.83359 0.80694 0.74348 1.20943 0.92753 0.94599 0.99516 1.20638 0.99149 1.02889 0.95394 1.21960 0.90285 1.01482 1.06596 0.89306 0.91030 0.88508 0.90180 0.90713 0.88893 0.89536 0.75405 0.90014 0.90149 0.88136 0.84345 0.82273 0.83416 0.85957 0.76552 1.23669 1.20633 0.84723 0.85024 0.78761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.08 9.82 71.24 0.70 0.62 16 2 C -0.07 -0.26 6.20 -19.73 -0.12 -0.38 16 3 C -0.09 -0.70 7.18 24.04 0.17 -0.53 16 4 C 0.55 5.22 7.93 69.97 0.55 5.77 16 5 O -0.50 -5.99 14.53 19.46 0.28 -5.71 16 6 O -0.35 -2.69 10.23 -56.75 -0.58 -3.27 16 7 C 0.08 0.25 5.30 71.98 0.38 0.63 16 8 C -0.11 0.04 4.01 -10.26 -0.04 0.00 16 9 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 10 C -0.12 0.11 7.48 31.12 0.23 0.34 16 11 C 0.08 -0.10 5.21 31.18 0.16 0.06 16 12 H 0.10 -0.49 8.14 -2.38 -0.02 -0.51 16 13 O -0.58 -0.84 13.68 -148.98 -2.04 -2.88 16 14 C -0.16 0.10 7.48 31.18 0.23 0.33 16 15 O -0.16 -1.07 10.67 -4.95 -0.05 -1.12 16 16 C 0.02 0.02 6.94 24.98 0.17 0.19 16 17 C 0.13 -0.63 5.27 71.24 0.38 -0.26 16 18 O -0.33 -0.37 10.12 -92.47 -0.94 -1.31 16 19 C 0.12 0.03 6.69 22.51 0.15 0.18 16 20 C -0.20 0.80 9.04 22.37 0.20 1.00 16 21 C -0.08 0.30 8.66 22.26 0.19 0.49 16 22 C -0.16 0.22 5.35 -19.85 -0.11 0.11 16 23 C -0.08 0.14 2.80 71.24 0.20 0.34 16 24 O -0.55 -1.09 12.83 -148.98 -1.91 -3.00 16 25 Si 0.77 -2.70 29.88 68.60 2.05 -0.65 16 26 C -0.06 -0.02 9.68 22.26 0.22 0.19 16 27 C -0.16 -0.23 9.99 22.37 0.22 0.00 16 28 C -0.18 0.13 10.72 22.07 0.24 0.37 16 29 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.07 0.33 6.44 -2.39 -0.02 0.32 16 31 H 0.10 -0.34 8.14 -2.38 -0.02 -0.36 16 32 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.07 0.27 7.87 -2.39 -0.02 0.25 16 34 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 35 H 0.09 0.08 8.10 -2.39 -0.02 0.07 16 36 H 0.40 -2.66 9.12 -74.06 -0.68 -3.33 16 37 H 0.08 0.12 7.92 -2.39 -0.02 0.10 16 38 H 0.08 -0.14 8.14 -2.38 -0.02 -0.16 16 39 H 0.10 -0.73 7.65 -2.39 -0.02 -0.75 16 40 H 0.14 -1.62 7.68 -2.39 -0.02 -1.64 16 41 H 0.16 -1.59 6.30 -2.91 -0.02 -1.60 16 42 H 0.15 -1.15 4.83 -2.91 -0.01 -1.16 16 43 H 0.12 -0.38 7.96 -2.39 -0.02 -0.40 16 44 H 0.39 -1.36 8.70 -74.05 -0.64 -2.01 16 45 H -0.31 -1.55 7.11 99.48 0.71 -0.84 16 46 H -0.28 0.12 7.00 99.48 0.70 0.82 16 47 H 0.13 -0.09 8.06 -2.91 -0.02 -0.11 16 48 H 0.13 0.12 8.06 -2.91 -0.02 0.09 16 49 H 0.20 -1.42 8.06 -2.91 -0.02 -1.44 16 Total: 0.00 -22.21 415.53 0.67 -21.55 By element: Atomic # 1 Polarization: -12.78 SS G_CDS: -0.28 Total: -13.07 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 4.14 Total: 9.46 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -5.24 Total: -17.29 kcal Atomic # 14 Polarization: -2.70 SS G_CDS: 2.05 Total: -0.65 kcal Total: -22.21 0.67 -21.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_3706294_11354868.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.029 kcal (2) G-P(sol) polarization free energy of solvation -22.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds