Wall clock time and date at job start Sat Mar 6 2021 05:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36635 * 126.65116 * 2 1 4 4 C 1.46469 * 125.99359 * 359.97438 * 3 2 1 5 5 O 1.21623 * 120.00196 * 359.71689 * 4 3 2 6 6 O 1.34896 * 120.00069 * 179.71549 * 4 3 2 7 7 C 1.45201 * 117.00194 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47011 * 179.97438 * 7 6 4 9 9 H 1.09002 * 109.47097 * 55.00186 * 8 7 6 10 10 C 1.53005 * 109.47197 * 174.99988 * 8 7 6 11 11 C 1.52997 * 109.47452 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46817 * 300.00239 * 11 10 8 13 13 H 1.08992 * 109.47063 * 299.99823 * 12 11 10 14 14 O 1.42903 * 109.46923 * 179.97438 * 12 11 10 15 15 C 1.53000 * 109.47233 * 60.00194 * 12 11 10 16 16 C 1.52997 * 109.47060 * 299.99657 * 15 12 11 17 17 O 1.34932 * 108.01101 * 179.71241 * 3 2 1 18 18 C 1.33911 * 109.37647 * 0.26435 * 17 3 2 19 19 C 1.50710 * 125.60709 * 180.02562 * 18 17 3 20 20 O 1.42893 * 109.47119 * 269.97476 * 19 18 17 21 21 C 1.35901 * 117.00143 * 180.02562 * 20 19 18 22 22 C 1.38736 * 120.05372 * 359.72389 * 21 20 19 23 23 C 1.38143 * 119.94126 * 179.74307 * 22 21 20 24 24 C 1.38260 * 120.05818 * 0.51409 * 23 22 21 25 25 C 1.50701 * 119.94487 * 179.74417 * 24 23 22 26 26 O 1.42903 * 109.47110 * 245.01461 * 25 24 23 27 27 Si 1.86294 * 109.47398 * 5.01862 * 25 24 23 28 28 C 1.38265 * 120.11201 * 359.76154 * 24 23 22 29 29 C 1.38152 * 120.05558 * 359.97438 * 28 24 23 30 30 C 1.35171 * 108.78685 * 359.97438 * 18 17 3 31 31 H 1.09005 * 109.46815 * 90.00179 * 1 2 3 32 32 H 1.08997 * 109.47442 * 210.00076 * 1 2 3 33 33 H 1.09003 * 109.47302 * 330.00386 * 1 2 3 34 34 H 1.09000 * 109.47308 * 60.00282 * 7 6 4 35 35 H 1.08998 * 109.47233 * 300.00083 * 7 6 4 36 36 H 1.09002 * 109.46935 * 60.00099 * 10 8 7 37 37 H 1.09001 * 109.46812 * 300.00441 * 10 8 7 38 38 H 1.08993 * 109.47194 * 179.97438 * 11 10 8 39 39 H 1.09002 * 109.46695 * 59.99734 * 11 10 8 40 40 H 0.96700 * 113.99509 * 60.00082 * 14 12 11 41 41 H 1.09002 * 109.47398 * 59.99826 * 15 12 11 42 42 H 1.09001 * 109.47194 * 180.02562 * 15 12 11 43 43 H 1.08996 * 109.47853 * 180.02562 * 16 15 12 44 44 H 1.09002 * 109.47153 * 300.00319 * 16 15 12 45 45 H 1.08996 * 109.46890 * 29.97383 * 19 18 17 46 46 H 1.09004 * 109.46812 * 149.97090 * 19 18 17 47 47 H 1.07997 * 120.02850 * 359.97438 * 22 21 20 48 48 H 1.08005 * 119.96821 * 180.23266 * 23 22 21 49 49 H 1.09004 * 109.47044 * 125.02460 * 25 24 23 50 50 H 0.96700 * 114.00222 * 179.97438 * 26 25 24 51 51 H 1.48504 * 109.99768 * 300.00421 * 27 25 24 52 52 H 1.48502 * 109.99985 * 61.31722 * 27 25 24 53 53 H 1.08003 * 119.97664 * 179.97438 * 28 24 23 54 54 H 1.07999 * 120.02606 * 179.97438 * 29 28 24 55 55 H 1.07994 * 126.43951 * 180.02562 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3227 1.0962 0.0000 4 6 1.8857 2.4942 -0.0005 5 8 0.6990 2.7605 -0.0062 6 8 2.7996 3.4865 0.0053 7 6 2.2945 4.8478 0.0038 8 6 3.4696 5.8277 0.0117 9 1 4.1310 5.6086 -0.8265 10 6 2.9417 7.2581 -0.1155 11 6 4.1167 8.2380 -0.1083 12 6 4.8917 8.0951 1.2032 13 1 4.2307 8.3143 2.0416 14 8 5.9896 9.0099 1.2097 15 6 5.4197 6.6648 1.3304 16 6 4.2447 5.6849 1.3231 17 8 3.6012 0.6649 0.0064 18 6 3.6184 -0.6741 0.0047 19 6 4.8549 -1.5357 0.0109 20 8 5.2534 -1.8066 -1.3344 21 6 6.3594 -2.5772 -1.5070 22 6 7.0504 -3.0578 -0.4041 23 6 8.1714 -3.8452 -0.5822 24 6 8.6110 -4.1457 -1.8581 25 6 9.8375 -5.0002 -2.0494 26 8 10.8658 -4.2255 -2.6696 27 14 10.4334 -5.6110 -0.3934 28 6 7.9274 -3.6633 -2.9589 29 6 6.8027 -2.8799 -2.7862 30 6 2.3444 -1.1258 -0.0024 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6816 5.0090 0.8907 35 1 1.6912 5.0106 -0.8893 36 1 2.2803 7.4772 0.7227 37 1 2.3899 7.3599 -1.0500 38 1 3.7407 9.2569 -0.1994 39 1 4.7778 8.0187 -0.9467 40 1 5.7287 9.9378 1.1320 41 1 6.0808 6.4455 0.4919 42 1 5.9714 6.5629 2.2649 43 1 4.6206 4.6659 1.4142 44 1 3.5836 5.9041 2.1616 45 1 5.6588 -1.0138 0.5298 46 1 4.6412 -2.4741 0.5226 47 1 6.7101 -2.8196 0.5928 48 1 8.7074 -4.2227 0.2761 49 1 9.5917 -5.8518 -2.6839 50 1 11.6868 -4.7127 -2.8234 51 1 10.7717 -4.4594 0.4809 52 1 9.3848 -6.4446 0.2478 53 1 8.2730 -3.8990 -3.9546 54 1 6.2693 -2.5029 -3.6464 55 1 2.0302 -2.1590 -0.0050 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_3706294_16737258.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:32:12 Heat of formation + Delta-G solvation = -165.207711 kcal Electronic energy + Delta-G solvation = -37013.841842 eV Core-core repulsion = 31949.428951 eV Total energy + Delta-G solvation = -5064.412891 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.185 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -44.11455 -41.60782 -41.38782 -40.10219 -39.24419 -38.05358 -37.25591 -36.66981 -35.39131 -33.44840 -32.30788 -32.08746 -31.84835 -31.67539 -29.12794 -28.74627 -26.65783 -26.18042 -24.45112 -23.92616 -23.31844 -22.79068 -22.30781 -22.22455 -21.13987 -20.83406 -19.63393 -19.48775 -18.38453 -18.27670 -18.23218 -18.05979 -17.74452 -17.15591 -17.02135 -16.78637 -16.52322 -16.36323 -15.78551 -15.64627 -15.51862 -15.34335 -15.04166 -14.95451 -14.56966 -14.52328 -14.40823 -14.20780 -14.09388 -14.01749 -13.97013 -13.83429 -13.79979 -13.70707 -13.46369 -13.34968 -13.20705 -12.97854 -12.53475 -12.43342 -12.29037 -12.18221 -12.05574 -12.02754 -12.01139 -11.88164 -11.72005 -11.56608 -11.16198 -10.93877 -10.75788 -10.28526 -10.18798 -10.00106 -9.36372 -4.93397 -0.57964 0.10951 0.16128 0.74554 0.99511 1.31957 1.53965 1.59457 1.64561 1.96679 2.22314 2.49317 3.10266 3.18718 3.42272 3.46072 3.46797 3.50181 3.56593 3.60969 3.72517 3.79383 3.87101 3.91210 3.92330 3.96347 4.10182 4.12087 4.13765 4.18902 4.25333 4.29630 4.30984 4.33009 4.38327 4.41361 4.41421 4.46580 4.49280 4.58991 4.65094 4.73766 4.80495 4.85549 4.86605 4.91965 4.97787 5.02033 5.02443 5.07027 5.08276 5.10091 5.12127 5.23763 5.25608 5.36358 5.38144 5.54697 5.56524 6.13087 6.36193 6.84146 6.92555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.070 4.070 3 C -0.089 4.089 4 C 0.553 3.447 5 O -0.499 6.499 6 O -0.352 6.352 7 C 0.069 3.931 8 C -0.084 4.084 9 H 0.078 0.922 10 C -0.106 4.106 11 C -0.145 4.145 12 C 0.101 3.899 13 H 0.065 0.935 14 O -0.591 6.591 15 C -0.114 4.114 16 C -0.107 4.107 17 O -0.159 6.159 18 C 0.020 3.980 19 C 0.132 3.868 20 O -0.321 6.321 21 C 0.125 3.875 22 C -0.203 4.203 23 C -0.100 4.100 24 C -0.128 4.128 25 C -0.075 4.075 26 O -0.566 6.566 27 Si 0.770 3.230 28 C -0.056 4.056 29 C -0.156 4.156 30 C -0.183 4.183 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.394 0.606 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.135 0.865 47 H 0.155 0.845 48 H 0.123 0.877 49 H 0.094 0.906 50 H 0.403 0.597 51 H -0.298 1.298 52 H -0.287 1.287 53 H 0.148 0.852 54 H 0.143 0.857 55 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.941 -4.165 0.450 4.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.072 4.072 3 C -0.139 4.139 4 C 0.399 3.601 5 O -0.390 6.390 6 O -0.268 6.268 7 C -0.004 4.004 8 C -0.103 4.103 9 H 0.097 0.903 10 C -0.144 4.144 11 C -0.183 4.183 12 C 0.043 3.957 13 H 0.082 0.918 14 O -0.399 6.399 15 C -0.152 4.152 16 C -0.145 4.145 17 O -0.055 6.055 18 C -0.032 4.032 19 C 0.058 3.942 20 O -0.236 6.236 21 C 0.080 3.920 22 C -0.222 4.222 23 C -0.117 4.117 24 C -0.129 4.129 25 C -0.185 4.185 26 O -0.376 6.376 27 Si 0.676 3.324 28 C -0.074 4.074 29 C -0.174 4.174 30 C -0.202 4.202 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.244 0.756 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.115 0.885 46 H 0.152 0.848 47 H 0.173 0.827 48 H 0.140 0.860 49 H 0.112 0.888 50 H 0.254 0.746 51 H -0.226 1.226 52 H -0.214 1.214 53 H 0.166 0.834 54 H 0.161 0.839 55 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 0.474 -3.839 1.250 4.065 hybrid contribution -0.782 0.946 -0.164 1.238 sum -0.308 -2.893 1.086 3.105 Atomic orbital electron populations 1.20579 0.86380 1.04647 1.03941 1.21055 0.98776 0.90390 0.96967 1.20703 0.82249 0.92040 1.18884 1.19183 0.83878 0.83875 0.73149 1.90918 1.17292 1.83423 1.47338 1.86645 1.39275 1.17407 1.83501 1.23443 0.97504 0.75815 1.03679 1.21251 0.95562 0.93969 0.99484 0.90341 1.21447 0.97775 0.91354 1.03815 1.22196 0.97367 1.00573 0.98134 1.21895 0.87450 0.89465 0.96914 0.91752 1.86490 1.35361 1.21139 1.96943 1.21470 0.98111 0.93148 1.02429 1.21497 0.96694 0.99145 0.97154 1.84073 1.28129 1.22658 1.70690 1.22533 0.97275 0.80141 1.03283 1.21283 0.91682 0.98263 0.82931 1.86102 1.42061 1.66356 1.29093 1.19046 0.86588 0.91719 0.94611 1.21382 0.98454 1.03140 0.99197 1.20875 0.96721 0.97701 0.96421 1.19668 0.97858 1.01996 0.93336 1.24767 0.88092 0.95754 1.09885 1.86448 1.26276 1.41865 1.82985 0.94361 0.85416 0.79232 0.73359 1.21044 0.92520 0.94194 0.99614 1.20748 0.98860 1.02355 0.95437 1.21950 0.90234 1.01548 1.06454 0.89613 0.88363 0.90667 0.89999 0.90132 0.90181 0.90114 0.89726 0.91831 0.75617 0.92225 0.91697 0.91625 0.90748 0.88485 0.84776 0.82713 0.86009 0.88779 0.74619 1.22570 1.21391 0.83385 0.83923 0.78886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.11 9.81 71.24 0.70 0.59 16 2 C -0.07 -0.32 6.20 -19.73 -0.12 -0.44 16 3 C -0.09 -0.75 7.18 24.04 0.17 -0.58 16 4 C 0.55 5.21 7.93 69.97 0.55 5.77 16 5 O -0.50 -5.64 14.54 19.43 0.28 -5.36 16 6 O -0.35 -2.69 9.78 -56.72 -0.55 -3.24 16 7 C 0.07 0.15 4.86 71.98 0.35 0.50 16 8 C -0.08 0.00 2.43 -10.79 -0.03 -0.02 16 9 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 10 C -0.11 0.36 5.20 30.60 0.16 0.52 16 11 C -0.14 0.35 5.55 30.59 0.17 0.52 16 12 C 0.10 0.03 3.47 30.60 0.11 0.14 16 13 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 14 O -0.59 -1.76 13.32 -148.98 -1.98 -3.74 16 15 C -0.11 -0.28 5.57 30.59 0.17 -0.11 16 16 C -0.11 -0.10 5.10 30.59 0.16 0.06 16 17 O -0.16 -1.34 10.67 -4.82 -0.05 -1.39 16 18 C 0.02 0.06 6.94 24.98 0.17 0.23 16 19 C 0.13 -0.16 5.27 71.24 0.38 0.21 16 20 O -0.32 -1.41 10.12 -92.43 -0.94 -2.35 16 21 C 0.13 0.57 6.69 22.51 0.15 0.72 16 22 C -0.20 -0.54 9.04 22.37 0.20 -0.33 16 23 C -0.10 -0.46 8.66 22.25 0.19 -0.26 16 24 C -0.13 -0.56 5.38 -19.85 -0.11 -0.67 16 25 C -0.08 0.07 2.79 71.24 0.20 0.27 16 26 O -0.57 0.16 12.81 -148.98 -1.91 -1.75 16 27 Si 0.77 -1.87 29.85 68.60 2.05 0.17 16 28 C -0.06 -0.21 9.68 22.26 0.22 0.01 16 29 C -0.16 -0.69 9.99 22.37 0.22 -0.47 16 30 C -0.18 -0.17 10.72 22.07 0.24 0.07 16 31 H 0.09 0.03 8.14 -2.38 -0.02 0.01 16 32 H 0.10 -0.35 8.14 -2.39 -0.02 -0.36 16 33 H 0.07 0.32 6.45 -2.39 -0.02 0.30 16 34 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.08 0.11 8.14 -2.39 -0.02 0.09 16 36 H 0.08 -0.40 8.14 -2.39 -0.02 -0.41 16 37 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 38 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 39 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 40 H 0.39 -2.12 9.08 -74.06 -0.67 -2.79 16 41 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.07 0.22 7.82 -2.39 -0.02 0.20 16 44 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 45 H 0.10 -0.30 7.65 -2.39 -0.02 -0.32 16 46 H 0.13 -1.03 7.67 -2.38 -0.02 -1.04 16 47 H 0.16 -0.49 6.30 -2.91 -0.02 -0.50 16 48 H 0.12 0.43 4.86 -2.91 -0.01 0.41 16 49 H 0.09 -0.48 7.96 -2.38 -0.02 -0.50 16 50 H 0.40 -4.35 8.74 -74.06 -0.65 -5.00 16 51 H -0.30 -1.53 7.05 99.48 0.70 -0.83 16 52 H -0.29 -0.75 7.11 99.48 0.71 -0.04 16 53 H 0.15 0.05 8.06 -2.91 -0.02 0.03 16 54 H 0.14 0.32 8.06 -2.91 -0.02 0.30 16 55 H 0.19 -1.06 8.06 -2.91 -0.02 -1.08 16 Total: 0.00 -23.68 450.25 0.79 -22.90 By element: Atomic # 1 Polarization: -11.57 SS G_CDS: -0.36 Total: -11.93 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 4.25 Total: 6.71 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -5.15 Total: -17.84 kcal Atomic # 14 Polarization: -1.87 SS G_CDS: 2.05 Total: 0.17 kcal Total: -23.68 0.79 -22.90 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_3706294_16737258.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.312 kcal (2) G-P(sol) polarization free energy of solvation -23.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds