Wall clock time and date at job start Sat Mar 6 2021 08:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.34847 * 125.65043 * 299.71887 * 4 2 1 6 6 C 1.40783 * 107.05382 * 179.85739 * 5 4 2 7 7 C 1.36137 * 106.72782 * 0.40323 * 6 5 4 8 8 C 1.47521 * 125.94746 * 179.73103 * 7 6 5 9 9 C 1.39845 * 119.99416 * 359.72947 * 8 7 6 10 10 C 1.36552 * 120.00535 * 179.71830 * 9 8 7 11 11 C 1.39877 * 119.99526 * 0.53242 * 10 9 8 12 12 C 1.47446 * 120.00751 * 179.71918 * 11 10 9 13 13 O 1.21515 * 119.99809 * 180.02562 * 12 11 10 14 14 O 1.34762 * 119.99794 * 0.02562 * 12 11 10 15 15 C 1.45202 * 117.00053 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 12 17 17 H 1.09000 * 112.84737 * 316.19899 * 16 15 14 18 18 C 1.53781 * 113.61236 * 87.50731 * 16 15 14 19 19 C 1.53779 * 87.08080 * 139.97783 * 18 16 15 20 20 H 1.09005 * 113.68920 * 89.12471 * 19 18 16 21 21 O 1.42895 * 113.61864 * 220.01961 * 19 18 16 22 22 C 1.53782 * 113.61009 * 185.00468 * 16 15 14 23 23 C 1.39889 * 119.99136 * 359.74012 * 11 10 9 24 24 C 1.36545 * 119.99177 * 0.02562 * 23 11 10 25 25 O 1.34225 * 125.65103 * 120.03141 * 4 2 1 26 26 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 27 27 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 28 28 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 29 29 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 30 30 H 1.08007 * 126.47629 * 359.97438 * 5 4 2 31 31 H 1.07995 * 126.63517 * 180.13064 * 6 5 4 32 32 H 1.08005 * 119.99965 * 0.02562 * 9 8 7 33 33 H 1.08006 * 120.00399 * 180.25189 * 10 9 8 34 34 H 1.08996 * 109.47198 * 300.00823 * 15 14 12 35 35 H 1.09005 * 109.46373 * 60.00466 * 15 14 12 36 36 H 1.08996 * 113.61319 * 254.52640 * 18 16 15 37 37 H 1.08997 * 113.61189 * 25.43072 * 18 16 15 38 38 H 0.96698 * 113.99806 * 277.50134 * 21 19 18 39 39 H 1.09000 * 113.61607 * 334.56508 * 22 16 15 40 40 H 1.08997 * 113.61536 * 105.38449 * 22 16 15 41 41 H 1.08001 * 120.00203 * 179.97438 * 23 11 10 42 42 H 1.08007 * 119.99754 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6812 -1.9957 -1.5530 6 6 2.3331 -2.2490 -2.7749 7 6 2.9602 -1.0944 -3.1312 8 6 3.7758 -0.8904 -4.3434 9 6 3.9634 -1.9428 -5.2451 10 6 4.7135 -1.7525 -6.3701 11 6 5.3036 -0.5082 -6.6150 12 6 6.1187 -0.3043 -7.8266 13 8 6.6316 0.7767 -8.0390 14 8 6.2949 -1.3167 -8.6984 15 6 7.1089 -1.0441 -9.8695 16 6 7.1938 -2.3024 -10.7357 17 1 7.3681 -3.2067 -10.1525 18 6 6.0437 -2.4321 -11.7482 19 6 7.0903 -2.9420 -12.7529 20 1 7.2361 -4.0218 -12.7233 21 8 6.9015 -2.4437 -14.0788 22 6 8.1354 -2.1568 -11.9428 23 6 5.1206 0.5428 -5.7101 24 6 4.3664 0.3534 -4.5876 25 8 2.7068 -0.1706 -2.1838 26 1 -0.3934 0.4418 0.7650 27 1 1.7923 -0.5138 0.8901 28 1 1.5616 2.4678 -1.2086 29 1 1.5878 2.4586 1.2241 30 1 1.0906 -2.6975 -0.9829 31 1 2.3386 -3.1805 -3.3213 32 1 3.5108 -2.9046 -5.0542 33 1 4.8550 -2.5641 -7.0686 34 1 6.6575 -0.2365 -10.4458 35 1 8.1105 -0.7504 -9.5554 36 1 5.3017 -3.1814 -11.4725 37 1 5.5987 -1.4773 -12.0281 38 1 6.2453 -2.9335 -14.5932 39 1 8.2622 -1.1268 -12.2760 40 1 9.0827 -2.6827 -11.8236 41 1 5.5764 1.5035 -5.8988 42 1 4.2254 1.1647 -3.8887 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_3706302_11354868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:48:48 Heat of formation + Delta-G solvation = -88.919284 kcal Electronic energy + Delta-G solvation = -26435.994683 eV Core-core repulsion = 22315.722574 eV Total energy + Delta-G solvation = -4120.272109 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.123 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.70035 -41.63236 -40.46645 -39.75704 -38.11784 -37.43037 -36.00011 -34.36303 -33.57946 -32.33385 -30.90905 -29.57932 -27.09492 -26.82282 -24.86229 -24.00697 -23.47315 -22.46808 -21.98549 -21.24297 -20.66156 -19.19329 -18.86383 -18.63832 -18.61583 -17.73852 -17.41209 -17.14372 -16.63503 -16.48077 -16.12456 -15.90736 -15.74723 -15.29520 -15.11517 -14.77167 -14.56200 -14.35979 -14.15009 -14.05291 -13.93844 -13.82412 -13.54248 -13.53499 -13.04624 -12.83583 -12.80704 -12.46830 -12.18126 -12.15299 -12.07428 -11.70319 -11.50074 -11.26193 -11.12821 -10.83655 -10.81431 -10.54569 -10.25479 -8.98640 -5.03322 -0.82203 0.27477 0.62544 1.07476 1.33100 1.40364 1.56171 1.66600 1.80088 1.91013 2.73474 3.10656 3.13954 3.35262 3.43494 3.46013 3.54991 3.62512 3.75961 3.80100 3.83398 3.84888 3.97043 4.12175 4.13865 4.16094 4.19301 4.30618 4.42114 4.51982 4.57595 4.68510 4.69391 4.69809 4.79005 4.85746 4.86630 4.89524 5.02976 5.13308 5.16458 5.21331 5.28907 5.41736 5.45008 5.61759 6.01142 6.23167 6.64783 6.74771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.533 6.533 2 C -0.038 4.038 3 Si 0.696 3.304 4 C 0.003 3.997 5 C -0.172 4.172 6 C -0.176 4.176 7 C 0.022 3.978 8 C 0.024 3.976 9 C -0.112 4.112 10 C -0.054 4.054 11 C -0.125 4.125 12 C 0.509 3.491 13 O -0.503 6.503 14 O -0.351 6.351 15 C 0.080 3.920 16 C -0.111 4.111 17 H 0.107 0.893 18 C -0.164 4.164 19 C 0.076 3.924 20 H 0.085 0.915 21 O -0.560 6.560 22 C -0.121 4.121 23 C -0.047 4.047 24 C -0.115 4.115 25 O -0.161 6.161 26 H 0.389 0.611 27 H 0.098 0.902 28 H -0.251 1.251 29 H -0.251 1.251 30 H 0.155 0.845 31 H 0.157 0.843 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.380 0.620 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.144 0.856 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.144 -4.136 2.575 4.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.147 4.147 3 Si 0.595 3.405 4 C -0.047 4.047 5 C -0.191 4.191 6 C -0.195 4.195 7 C -0.028 4.028 8 C 0.024 3.976 9 C -0.130 4.130 10 C -0.072 4.072 11 C -0.126 4.126 12 C 0.354 3.646 13 O -0.392 6.392 14 O -0.268 6.268 15 C 0.007 3.993 16 C -0.129 4.129 17 H 0.125 0.875 18 C -0.202 4.202 19 C 0.017 3.983 20 H 0.103 0.897 21 O -0.365 6.365 22 C -0.158 4.158 23 C -0.065 4.065 24 C -0.133 4.133 25 O -0.058 6.058 26 H 0.238 0.762 27 H 0.116 0.884 28 H -0.175 1.175 29 H -0.176 1.176 30 H 0.173 0.827 31 H 0.174 0.826 32 H 0.157 0.843 33 H 0.163 0.837 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.228 0.772 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.162 0.838 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.754 -2.563 2.110 3.405 hybrid contribution -1.585 -0.719 0.332 1.772 sum -0.831 -3.282 2.442 4.174 Atomic orbital electron populations 1.86557 1.16828 1.80418 1.50365 1.23784 0.84937 1.12186 0.93773 0.94502 0.91463 0.73453 0.81100 1.21328 0.98261 0.93056 0.92100 1.21533 1.03567 0.96077 0.97941 1.21917 1.00867 0.98842 0.97873 1.20331 1.03314 0.88248 0.90868 1.18057 0.94683 0.94614 0.90241 1.20812 0.99817 0.98691 0.93719 1.21126 0.93475 0.96232 0.96360 1.19250 1.02625 0.96163 0.94535 1.21076 0.78580 0.82025 0.82921 1.90876 1.46824 1.26132 1.75339 1.86521 1.66151 1.40915 1.33177 1.23112 0.94776 0.97900 0.83545 1.22373 0.98170 0.98274 0.94099 0.87453 1.23795 0.97212 1.02996 0.96210 1.23288 0.96336 0.97214 0.81452 0.89683 1.86530 1.64480 1.59970 1.25568 1.23075 0.97371 1.02375 0.92974 1.20988 0.95109 0.98655 0.91782 1.21017 0.97510 0.96852 0.97943 1.83904 1.55107 1.39045 1.27736 0.76191 0.88434 1.17457 1.17573 0.82748 0.82558 0.84308 0.83653 0.90655 0.90588 0.90673 0.89021 0.77192 0.88696 0.89999 0.83810 0.84136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.20 12.85 -35.23 -0.45 -0.65 16 2 C -0.04 0.02 2.97 36.01 0.11 0.13 16 3 Si 0.70 -0.62 32.10 -169.99 -5.46 -6.07 16 4 C 0.00 0.00 6.25 -35.51 -0.22 -0.22 16 5 C -0.17 -0.24 10.77 -39.82 -0.43 -0.67 16 6 C -0.18 -0.14 10.26 -39.38 -0.40 -0.55 16 7 C 0.02 0.04 7.02 -36.55 -0.26 -0.22 16 8 C 0.02 0.02 5.88 -104.91 -0.62 -0.60 16 9 C -0.11 0.07 9.50 -39.59 -0.38 -0.31 16 10 C -0.05 0.02 9.56 -39.58 -0.38 -0.36 16 11 C -0.12 -0.18 5.88 -104.92 -0.62 -0.80 16 12 C 0.51 1.53 7.89 34.48 0.27 1.81 16 13 O -0.50 -2.84 16.12 -19.28 -0.31 -3.15 16 14 O -0.35 -0.57 9.45 -40.66 -0.38 -0.96 16 15 C 0.08 0.05 5.31 37.16 0.20 0.24 16 16 C -0.11 0.12 4.02 -89.81 -0.36 -0.24 16 17 H 0.11 -0.20 8.14 -51.93 -0.42 -0.63 16 18 C -0.16 0.17 7.46 -25.92 -0.19 -0.02 16 19 C 0.08 -0.07 5.21 -25.92 -0.14 -0.20 16 20 H 0.09 -0.20 8.14 -51.93 -0.42 -0.62 16 21 O -0.56 -0.32 13.67 -35.23 -0.48 -0.80 16 22 C -0.12 0.10 7.47 -25.92 -0.19 -0.09 16 23 C -0.05 -0.05 9.53 -39.57 -0.38 -0.43 16 24 C -0.12 -0.07 9.66 -39.59 -0.38 -0.46 16 25 O -0.16 -0.36 8.78 4.73 0.04 -0.32 16 26 H 0.39 -1.59 8.74 45.56 0.40 -1.19 16 27 H 0.10 -0.30 7.96 -51.92 -0.41 -0.71 16 28 H -0.25 -0.76 7.11 56.52 0.40 -0.36 16 29 H -0.25 -0.06 7.11 56.52 0.40 0.35 16 30 H 0.15 0.00 8.06 -52.48 -0.42 -0.43 16 31 H 0.16 -0.26 7.25 -52.49 -0.38 -0.64 16 32 H 0.14 -0.40 6.97 -52.48 -0.37 -0.76 16 33 H 0.15 -0.29 7.60 -52.48 -0.40 -0.69 16 34 H 0.08 0.08 7.84 -51.93 -0.41 -0.33 16 35 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 36 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 37 H 0.09 -0.01 7.89 -51.93 -0.41 -0.42 16 38 H 0.38 -1.32 9.12 45.56 0.42 -0.90 16 39 H 0.09 0.00 8.10 -51.93 -0.42 -0.42 16 40 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 41 H 0.14 0.10 7.64 -52.49 -0.40 -0.30 16 42 H 0.14 -0.08 7.90 -52.48 -0.41 -0.49 16 LS Contribution 367.59 15.07 5.54 5.54 Total: 0.00 -9.03 367.59 -10.40 -19.43 By element: Atomic # 1 Polarization: -5.51 SS G_CDS: -4.53 Total: -10.04 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -4.37 Total: -2.98 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -1.59 Total: -5.87 kcal Atomic # 14 Polarization: -0.62 SS G_CDS: -5.46 Total: -6.07 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -9.03 -10.40 -19.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_3706302_11354868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.493 kcal (2) G-P(sol) polarization free energy of solvation -9.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds