Wall clock time and date at job start Sat Mar 6 2021 08:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.34847 * 125.65043 * 299.71887 * 4 2 1 6 6 C 1.40783 * 107.05382 * 179.85739 * 5 4 2 7 7 C 1.36137 * 106.72782 * 0.40323 * 6 5 4 8 8 C 1.47521 * 125.94746 * 179.73103 * 7 6 5 9 9 C 1.39845 * 119.99416 * 359.72947 * 8 7 6 10 10 C 1.36552 * 120.00535 * 179.71830 * 9 8 7 11 11 C 1.39877 * 119.99526 * 0.53242 * 10 9 8 12 12 C 1.47446 * 120.00751 * 179.71918 * 11 10 9 13 13 O 1.21515 * 119.99809 * 180.02562 * 12 11 10 14 14 O 1.34762 * 119.99794 * 0.02562 * 12 11 10 15 15 C 1.45202 * 117.00053 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 12 17 17 H 1.09000 * 112.84737 * 316.19899 * 16 15 14 18 18 C 1.53781 * 113.61236 * 87.50731 * 16 15 14 19 19 C 1.53779 * 87.08080 * 139.97783 * 18 16 15 20 20 H 1.09005 * 113.68920 * 89.12471 * 19 18 16 21 21 O 1.42895 * 113.61864 * 220.01961 * 19 18 16 22 22 C 1.53782 * 113.61009 * 185.00468 * 16 15 14 23 23 C 1.39889 * 119.99136 * 359.74012 * 11 10 9 24 24 C 1.36545 * 119.99177 * 0.02562 * 23 11 10 25 25 O 1.34225 * 125.65103 * 120.03141 * 4 2 1 26 26 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 27 27 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 28 28 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 29 29 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 30 30 H 1.08007 * 126.47629 * 359.97438 * 5 4 2 31 31 H 1.07995 * 126.63517 * 180.13064 * 6 5 4 32 32 H 1.08005 * 119.99965 * 0.02562 * 9 8 7 33 33 H 1.08006 * 120.00399 * 180.25189 * 10 9 8 34 34 H 1.08996 * 109.47198 * 300.00823 * 15 14 12 35 35 H 1.09005 * 109.46373 * 60.00466 * 15 14 12 36 36 H 1.08996 * 113.61319 * 254.52640 * 18 16 15 37 37 H 1.08997 * 113.61189 * 25.43072 * 18 16 15 38 38 H 0.96698 * 113.99806 * 277.50134 * 21 19 18 39 39 H 1.09000 * 113.61607 * 334.56508 * 22 16 15 40 40 H 1.08997 * 113.61536 * 105.38449 * 22 16 15 41 41 H 1.08001 * 120.00203 * 179.97438 * 23 11 10 42 42 H 1.08007 * 119.99754 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6812 -1.9957 -1.5530 6 6 2.3331 -2.2490 -2.7749 7 6 2.9602 -1.0944 -3.1312 8 6 3.7758 -0.8904 -4.3434 9 6 3.9634 -1.9428 -5.2451 10 6 4.7135 -1.7525 -6.3701 11 6 5.3036 -0.5082 -6.6150 12 6 6.1187 -0.3043 -7.8266 13 8 6.6316 0.7767 -8.0390 14 8 6.2949 -1.3167 -8.6984 15 6 7.1089 -1.0441 -9.8695 16 6 7.1938 -2.3024 -10.7357 17 1 7.3681 -3.2067 -10.1525 18 6 6.0437 -2.4321 -11.7482 19 6 7.0903 -2.9420 -12.7529 20 1 7.2361 -4.0218 -12.7233 21 8 6.9015 -2.4437 -14.0788 22 6 8.1354 -2.1568 -11.9428 23 6 5.1206 0.5428 -5.7101 24 6 4.3664 0.3534 -4.5876 25 8 2.7068 -0.1706 -2.1838 26 1 -0.3934 0.4418 0.7650 27 1 1.7923 -0.5138 0.8901 28 1 1.5616 2.4678 -1.2086 29 1 1.5878 2.4586 1.2241 30 1 1.0906 -2.6975 -0.9829 31 1 2.3386 -3.1805 -3.3213 32 1 3.5108 -2.9046 -5.0542 33 1 4.8550 -2.5641 -7.0686 34 1 6.6575 -0.2365 -10.4458 35 1 8.1105 -0.7504 -9.5554 36 1 5.3017 -3.1814 -11.4725 37 1 5.5987 -1.4773 -12.0281 38 1 6.2453 -2.9335 -14.5932 39 1 8.2622 -1.1268 -12.2760 40 1 9.0827 -2.6827 -11.8236 41 1 5.5764 1.5035 -5.8988 42 1 4.2254 1.1647 -3.8887 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_3706302_11354868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:48:47 Heat of formation + Delta-G solvation = -87.040571 kcal Electronic energy + Delta-G solvation = -26435.913216 eV Core-core repulsion = 22315.722574 eV Total energy + Delta-G solvation = -4120.190642 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.123 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.74003 -41.78713 -40.42399 -39.79733 -38.07661 -37.61993 -35.99110 -34.40876 -33.61490 -32.33822 -30.93288 -29.60248 -27.11151 -26.74172 -24.89570 -24.01589 -23.45073 -22.52620 -22.05830 -21.28403 -20.59411 -19.24654 -18.83611 -18.71254 -18.60736 -17.84165 -17.57015 -17.19317 -16.64312 -16.40457 -16.12302 -15.89838 -15.76601 -15.29182 -15.16588 -14.73932 -14.59343 -14.34936 -14.16773 -14.09471 -13.94791 -13.89361 -13.63329 -13.47965 -13.08333 -12.85006 -12.81797 -12.42826 -12.19172 -12.15846 -12.13872 -11.79295 -11.64385 -11.22442 -11.16981 -10.83099 -10.74147 -10.54020 -10.24772 -9.02571 -4.98378 -0.88571 0.28240 0.55419 1.11471 1.27913 1.38594 1.44669 1.65936 1.72711 1.90957 2.69851 3.15753 3.23014 3.39849 3.48254 3.52949 3.58808 3.64609 3.78324 3.83962 3.86050 3.94854 3.98698 4.13904 4.16897 4.20191 4.24682 4.34263 4.39441 4.53663 4.63782 4.68389 4.74961 4.77708 4.79351 4.88628 4.90540 4.97783 5.09057 5.11815 5.14561 5.22167 5.28751 5.39781 5.43982 5.62297 5.97503 6.49552 6.55233 6.88383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.040 4.040 3 Si 0.760 3.240 4 C -0.014 4.014 5 C -0.184 4.184 6 C -0.173 4.173 7 C 0.004 3.996 8 C 0.018 3.982 9 C -0.107 4.107 10 C -0.045 4.045 11 C -0.141 4.141 12 C 0.510 3.490 13 O -0.539 6.539 14 O -0.345 6.345 15 C 0.076 3.924 16 C -0.101 4.101 17 H 0.123 0.877 18 C -0.163 4.163 19 C 0.075 3.925 20 H 0.105 0.895 21 O -0.584 6.584 22 C -0.126 4.126 23 C -0.054 4.054 24 C -0.123 4.123 25 O -0.175 6.175 26 H 0.406 0.594 27 H 0.130 0.870 28 H -0.311 1.311 29 H -0.262 1.262 30 H 0.167 0.833 31 H 0.182 0.818 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.395 0.605 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.139 0.861 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.206 -6.367 3.270 7.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.148 4.148 3 Si 0.664 3.336 4 C -0.064 4.064 5 C -0.203 4.203 6 C -0.192 4.192 7 C -0.046 4.046 8 C 0.018 3.982 9 C -0.124 4.124 10 C -0.063 4.063 11 C -0.142 4.142 12 C 0.357 3.643 13 O -0.430 6.430 14 O -0.261 6.261 15 C 0.003 3.997 16 C -0.119 4.119 17 H 0.141 0.859 18 C -0.201 4.201 19 C 0.017 3.983 20 H 0.123 0.877 21 O -0.392 6.392 22 C -0.163 4.163 23 C -0.073 4.073 24 C -0.141 4.141 25 O -0.073 6.073 26 H 0.259 0.741 27 H 0.147 0.853 28 H -0.239 1.239 29 H -0.187 1.187 30 H 0.184 0.816 31 H 0.199 0.801 32 H 0.184 0.816 33 H 0.183 0.817 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.246 0.754 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.157 0.843 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.399 -4.821 2.827 5.603 hybrid contribution -1.539 0.005 0.092 1.542 sum -1.140 -4.816 2.920 5.746 Atomic orbital electron populations 1.86506 1.17338 1.80855 1.51884 1.23955 0.84635 1.12154 0.94097 0.93744 0.90588 0.72148 0.77138 1.21835 0.98281 0.93697 0.92568 1.21817 1.03827 0.96240 0.98423 1.22262 0.99849 0.99398 0.97690 1.20592 1.04110 0.88666 0.91191 1.18238 0.94549 0.94991 0.90416 1.21098 0.99134 0.99336 0.92846 1.21337 0.92525 0.95809 0.96661 1.19313 1.03443 0.97244 0.94188 1.21402 0.78031 0.81667 0.83232 1.90854 1.48473 1.27471 1.76213 1.86519 1.66074 1.40302 1.33201 1.23224 0.94386 0.98767 0.83325 1.22358 0.98099 0.97793 0.93699 0.85941 1.23757 0.97465 1.02609 0.96253 1.23417 0.95967 0.98125 0.80834 0.87709 1.86486 1.65300 1.61030 1.26411 1.23112 0.98148 1.01850 0.93232 1.20998 0.95461 0.98679 0.92114 1.21087 0.97664 0.97377 0.97925 1.83896 1.55529 1.39679 1.28177 0.74148 0.85298 1.23936 1.18692 0.81570 0.80094 0.81578 0.81655 0.91693 0.90814 0.89565 0.90468 0.75434 0.90127 0.88933 0.84278 0.83778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.16 12.85 -148.98 -1.91 -2.08 16 2 C -0.04 0.06 2.97 71.24 0.21 0.28 16 3 Si 0.76 -0.88 32.10 68.60 2.20 1.32 16 4 C -0.01 -0.05 6.25 24.91 0.16 0.11 16 5 C -0.18 -0.36 10.77 22.11 0.24 -0.12 16 6 C -0.17 -0.09 10.26 22.40 0.23 0.14 16 7 C 0.00 0.01 7.02 24.23 0.17 0.18 16 8 C 0.02 0.03 5.88 -20.05 -0.12 -0.09 16 9 C -0.11 0.27 9.50 22.26 0.21 0.48 16 10 C -0.05 0.07 9.56 22.27 0.21 0.28 16 11 C -0.14 -0.52 5.88 -20.06 -0.12 -0.64 16 12 C 0.51 3.71 7.89 70.25 0.55 4.26 16 13 O -0.54 -7.24 16.12 19.79 0.32 -6.92 16 14 O -0.34 -1.26 9.45 -56.72 -0.54 -1.80 16 15 C 0.08 0.16 5.31 71.98 0.38 0.54 16 16 C -0.10 0.25 4.02 -10.27 -0.04 0.21 16 17 H 0.12 -0.64 8.14 -2.39 -0.02 -0.66 16 18 C -0.16 0.37 7.46 31.12 0.23 0.61 16 19 C 0.08 -0.18 5.21 31.12 0.16 -0.01 16 20 H 0.11 -0.66 8.14 -2.38 -0.02 -0.68 16 21 O -0.58 -0.68 13.67 -148.98 -2.04 -2.71 16 22 C -0.13 0.20 7.47 31.12 0.23 0.43 16 23 C -0.05 -0.20 9.53 22.27 0.21 0.01 16 24 C -0.12 -0.30 9.66 22.26 0.21 -0.09 16 25 O -0.17 -0.90 8.78 -6.00 -0.05 -0.95 16 26 H 0.41 -3.58 8.74 -74.06 -0.65 -4.22 16 27 H 0.13 -1.02 7.96 -2.38 -0.02 -1.04 16 28 H -0.31 -2.79 7.11 99.48 0.71 -2.08 16 29 H -0.26 -0.09 7.11 99.48 0.71 0.62 16 30 H 0.17 -0.21 8.06 -2.91 -0.02 -0.23 16 31 H 0.18 -1.03 7.25 -2.91 -0.02 -1.05 16 32 H 0.17 -1.39 6.97 -2.91 -0.02 -1.41 16 33 H 0.17 -0.96 7.60 -2.91 -0.02 -0.98 16 34 H 0.06 0.26 7.84 -2.39 -0.02 0.24 16 35 H 0.07 0.18 8.14 -2.38 -0.02 0.16 16 36 H 0.09 -0.39 8.14 -2.39 -0.02 -0.40 16 37 H 0.08 0.06 7.89 -2.39 -0.02 0.04 16 38 H 0.40 -2.80 9.12 -74.06 -0.68 -3.47 16 39 H 0.08 0.10 8.10 -2.39 -0.02 0.08 16 40 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 41 H 0.14 0.54 7.64 -2.91 -0.02 0.52 16 42 H 0.14 0.11 7.90 -2.91 -0.02 0.09 16 Total: 0.00 -22.35 367.59 0.91 -21.44 By element: Atomic # 1 Polarization: -14.65 SS G_CDS: -0.21 Total: -14.87 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 3.14 Total: 6.58 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -4.22 Total: -14.47 kcal Atomic # 14 Polarization: -0.88 SS G_CDS: 2.20 Total: 1.32 kcal Total: -22.35 0.91 -21.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_3706302_11354868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.603 kcal (2) G-P(sol) polarization free energy of solvation -22.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds