Wall clock time and date at job start Sat Mar 6 2021 07:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46818 * 2 1 4 4 C 1.52991 * 109.47486 * 239.99522 * 2 1 3 5 5 O 1.42899 * 109.46849 * 119.99136 * 2 1 3 6 6 C 1.42902 * 113.99829 * 60.00858 * 5 2 1 7 7 H 1.08999 * 112.90530 * 341.24361 * 6 5 2 8 8 C 1.53954 * 113.67040 * 112.43668 * 6 5 2 9 9 C 1.53787 * 87.02216 * 139.92848 * 8 6 5 10 10 H 1.09000 * 113.60762 * 89.22758 * 9 8 6 11 11 C 1.52990 * 113.61601 * 220.05059 * 9 8 6 12 12 O 1.45201 * 109.46981 * 274.13692 * 11 9 8 13 13 C 1.34768 * 117.00152 * 180.02562 * 12 11 9 14 14 O 1.21507 * 119.99884 * 359.97438 * 13 12 11 15 15 C 1.47446 * 120.00097 * 179.97438 * 13 12 11 16 16 C 1.39881 * 120.00280 * 180.02562 * 15 13 12 17 17 C 1.36544 * 119.99336 * 179.97438 * 16 15 13 18 18 C 1.39848 * 120.00682 * 359.97438 * 17 16 15 19 19 C 1.47526 * 119.99780 * 179.97438 * 18 17 16 20 20 C 1.36139 * 125.94546 * 179.71518 * 19 18 17 21 21 C 1.40780 * 106.73120 * 179.88854 * 20 19 18 22 22 C 1.34853 * 107.05157 * 0.37355 * 21 20 19 23 23 C 1.50693 * 125.65138 * 179.77301 * 22 21 20 24 24 O 1.42900 * 109.47543 * 65.02039 * 23 22 21 25 25 Si 1.86295 * 109.47297 * 185.02235 * 23 22 21 26 26 O 1.34224 * 108.69662 * 359.76742 * 22 21 20 27 27 C 1.39845 * 120.00627 * 0.25422 * 18 17 16 28 28 C 1.36548 * 120.00403 * 359.48913 * 27 18 17 29 29 C 1.53785 * 87.17163 * 334.63855 * 9 8 6 30 30 H 1.08994 * 109.47446 * 300.00252 * 1 2 3 31 31 H 1.08993 * 109.47342 * 60.00864 * 1 2 3 32 32 H 1.09007 * 109.46913 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47013 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.46898 * 299.99688 * 3 2 1 35 35 H 1.09002 * 109.47576 * 59.99457 * 3 2 1 36 36 H 1.09007 * 109.47261 * 300.00051 * 4 2 1 37 37 H 1.08997 * 109.47316 * 59.99986 * 4 2 1 38 38 H 1.09004 * 109.47212 * 179.97438 * 4 2 1 39 39 H 1.09004 * 113.61309 * 25.41447 * 8 6 5 40 40 H 1.08994 * 113.66617 * 254.45882 * 8 6 5 41 41 H 1.09004 * 109.47329 * 154.14166 * 11 9 8 42 42 H 1.08999 * 109.47633 * 34.13602 * 11 9 8 43 43 H 1.08000 * 120.00182 * 359.97438 * 16 15 13 44 44 H 1.08000 * 120.00217 * 180.02562 * 17 16 15 45 45 H 1.08007 * 126.63225 * 0.02562 * 20 19 18 46 46 H 1.07995 * 126.47300 * 180.10350 * 21 20 19 47 47 H 1.09003 * 109.47165 * 305.02237 * 23 22 21 48 48 H 0.96704 * 113.99826 * 59.99969 * 24 23 22 49 49 H 1.48502 * 110.00329 * 179.97438 * 25 23 22 50 50 H 1.48500 * 110.00151 * 301.31722 * 25 23 22 51 51 H 1.08004 * 120.00256 * 179.74460 * 27 18 17 52 52 H 1.08003 * 120.00163 * 180.23668 * 28 27 18 53 53 H 1.09004 * 113.61057 * 139.93363 * 29 9 8 54 54 H 1.08996 * 113.61434 * 270.84079 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0063 -0.6735 1.1669 6 6 1.5847 -2.0354 1.2647 7 1 0.7242 -2.2594 0.6342 8 6 2.7336 -3.0499 1.1201 9 6 2.0563 -3.8555 2.2414 10 1 1.3246 -4.5777 1.8792 11 6 3.0420 -4.4598 3.2433 12 8 3.5112 -5.7414 2.7477 13 6 4.3919 -6.4101 3.5181 14 8 4.7580 -5.9349 4.5747 15 6 4.9111 -7.7183 3.0787 16 6 5.8248 -8.4126 3.8785 17 6 6.3052 -9.6243 3.4717 18 6 5.8833 -10.1714 2.2558 19 6 6.4028 -11.4803 1.8162 20 6 6.0721 -12.1253 0.6637 21 6 6.7996 -13.3305 0.6507 22 6 7.5248 -13.3669 1.7870 23 6 8.4533 -14.4793 2.2011 24 8 9.5454 -14.5550 1.2825 25 14 9.1044 -14.1398 3.9132 26 8 7.2827 -12.2482 2.4881 27 6 4.9735 -9.4752 1.4538 28 6 4.4889 -8.2659 1.8628 29 6 1.4332 -2.5309 2.7126 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1299 1.4425 -0.0005 34 1 1.6765 1.9563 -0.8901 35 1 1.6765 1.9564 0.8899 36 1 1.6767 -1.7490 -1.2490 37 1 1.6768 -0.2076 -2.1391 38 1 3.1301 -0.7209 -1.2493 39 1 3.7081 -2.6486 1.3984 40 1 2.7451 -3.5638 0.1590 41 1 2.5441 -4.6014 4.2026 42 1 3.8899 -3.7868 3.3699 43 1 6.1504 -7.9903 4.8177 44 1 7.0103 -10.1607 4.0893 45 1 5.3862 -11.7782 -0.0949 46 1 6.7773 -14.0854 -0.1212 47 1 7.9110 -15.4248 2.1994 48 1 10.0735 -13.7465 1.2319 49 1 10.0211 -15.2300 4.3335 50 1 9.8187 -12.8380 3.9362 51 1 4.6509 -9.8959 0.5129 52 1 3.7833 -7.7300 1.2451 53 1 0.3964 -2.6264 3.0352 54 1 2.0515 -1.9874 3.4270 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_3706302_14598394.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:19:41 Heat of formation + Delta-G solvation = -87.412787 kcal Electronic energy + Delta-G solvation = -34232.261379 eV Core-core repulsion = 29489.904121 eV Total energy + Delta-G solvation = -4742.357258 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.186 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -43.74140 -41.79153 -40.85177 -39.94337 -38.53264 -38.13310 -37.32426 -34.40447 -33.92138 -33.55210 -32.33476 -30.85194 -29.68480 -28.34333 -28.31265 -27.10171 -26.62709 -24.93969 -24.04379 -23.61605 -22.54370 -22.12418 -21.32458 -20.86096 -20.61151 -19.33256 -18.92276 -18.34863 -17.88960 -17.59671 -17.51590 -17.48206 -16.75262 -16.56759 -16.14881 -15.90957 -15.84786 -15.82366 -15.46786 -14.92452 -14.77525 -14.67360 -14.53109 -14.37977 -14.16752 -14.08606 -13.94327 -13.79451 -13.77725 -13.46834 -13.31493 -13.20865 -13.15901 -12.98199 -12.89360 -12.78771 -12.65272 -12.41715 -12.20058 -12.18250 -12.15843 -11.93354 -11.81574 -11.56052 -11.34081 -11.18844 -11.15651 -10.85355 -10.64137 -10.35163 -10.24950 -9.03923 -4.97695 -0.88354 0.28075 0.57113 1.12944 1.29824 1.44964 1.45725 1.69401 1.71479 1.89387 2.69865 2.73147 3.19271 3.28961 3.38813 3.51848 3.55886 3.63921 3.76855 3.79639 3.83654 3.89542 3.92628 3.98740 3.99169 4.09251 4.12665 4.13989 4.19647 4.27259 4.38667 4.41854 4.50249 4.53930 4.63720 4.66924 4.68479 4.76683 4.78036 4.78192 4.79344 4.84837 4.89280 4.90288 4.92228 4.95038 5.01521 5.10106 5.12420 5.13386 5.18266 5.22677 5.28895 5.33395 5.34268 5.40743 5.43962 5.62216 5.95776 6.31867 6.43336 6.56191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.098 3.902 3 C -0.141 4.141 4 C -0.173 4.173 5 O -0.383 6.383 6 C 0.060 3.940 7 H 0.106 0.894 8 C -0.148 4.148 9 C -0.100 4.100 10 H 0.121 0.879 11 C 0.078 3.922 12 O -0.345 6.345 13 C 0.509 3.491 14 O -0.538 6.538 15 C -0.140 4.140 16 C -0.055 4.055 17 C -0.121 4.121 18 C 0.018 3.982 19 C 0.005 3.995 20 C -0.174 4.174 21 C -0.182 4.182 22 C -0.049 4.049 23 C -0.035 4.035 24 O -0.535 6.535 25 Si 0.765 3.235 26 O -0.174 6.174 27 C -0.107 4.107 28 C -0.046 4.046 29 C -0.126 4.126 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.139 0.861 44 H 0.145 0.855 45 H 0.179 0.821 46 H 0.166 0.834 47 H 0.157 0.843 48 H 0.390 0.610 49 H -0.282 1.282 50 H -0.294 1.294 51 H 0.166 0.834 52 H 0.165 0.835 53 H 0.091 0.909 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.060 -1.423 -4.406 6.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.059 3.941 3 C -0.198 4.198 4 C -0.231 4.231 5 O -0.303 6.303 6 C 0.002 3.998 7 H 0.124 0.876 8 C -0.186 4.186 9 C -0.118 4.118 10 H 0.139 0.861 11 C 0.005 3.995 12 O -0.261 6.261 13 C 0.356 3.644 14 O -0.430 6.430 15 C -0.141 4.141 16 C -0.073 4.073 17 C -0.139 4.139 18 C 0.017 3.983 19 C -0.044 4.044 20 C -0.193 4.193 21 C -0.201 4.201 22 C -0.100 4.100 23 C -0.144 4.144 24 O -0.343 6.343 25 Si 0.670 3.330 26 O -0.071 6.071 27 C -0.124 4.124 28 C -0.064 4.064 29 C -0.164 4.164 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.157 0.843 44 H 0.163 0.837 45 H 0.196 0.804 46 H 0.184 0.816 47 H 0.174 0.826 48 H 0.240 0.760 49 H -0.208 1.208 50 H -0.221 1.221 51 H 0.183 0.817 52 H 0.182 0.818 53 H 0.109 0.891 54 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.266 -1.522 -3.290 5.599 hybrid contribution 0.853 0.615 -0.724 1.277 sum -3.413 -0.907 -4.014 5.347 Atomic orbital electron populations 1.22447 0.94836 1.02909 1.03197 1.21674 0.93775 0.93219 0.85411 1.21803 1.01546 0.93456 1.02968 1.22439 1.01723 1.01110 0.97794 1.88022 1.74282 1.24281 1.43685 1.23718 0.97356 0.81180 0.97513 0.87643 1.23625 0.98843 0.96678 0.99446 1.22331 0.97598 0.95963 0.95910 0.86134 1.23203 0.97504 0.80692 0.98139 1.86520 1.55929 1.34275 1.49403 1.21408 0.76090 0.85405 0.81480 1.90851 1.58246 1.69232 1.24663 1.19316 1.03026 0.92965 0.98832 1.21002 0.93472 0.93651 0.99214 1.21080 1.00971 0.95600 0.96284 1.18239 0.95872 0.89381 0.94770 1.20575 0.96589 0.93430 0.93795 1.22256 1.03423 0.95239 0.98401 1.21831 0.99050 1.00033 0.99210 1.23164 1.03678 0.89030 0.94082 1.24496 0.88139 0.97312 1.04444 1.86641 1.42347 1.42522 1.62812 0.93623 0.85418 0.76545 0.77458 1.83926 1.50901 1.27199 1.45100 1.21093 0.96123 0.94405 1.00814 1.21333 0.97019 0.94527 0.93546 1.23228 1.02386 0.93943 0.96846 0.92281 0.90440 0.91571 0.92556 0.89726 0.92377 0.91760 0.90610 0.92585 0.90572 0.90016 0.90775 0.91674 0.84328 0.83729 0.80369 0.81627 0.82599 0.76043 1.20811 1.22071 0.81663 0.81787 0.89061 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.42 8.38 71.98 0.60 1.02 16 2 C 0.10 0.00 1.11 -10.80 -0.01 -0.01 16 3 C -0.14 0.03 8.84 71.98 0.64 0.66 16 4 C -0.17 0.33 8.38 71.98 0.60 0.93 16 5 O -0.38 -1.39 10.00 -148.98 -1.49 -2.88 16 6 C 0.06 -0.05 2.82 31.18 0.09 0.03 16 7 H 0.11 -0.40 5.55 -2.39 -0.01 -0.41 16 8 C -0.15 0.15 7.48 31.18 0.23 0.38 16 9 C -0.10 0.23 4.01 -10.27 -0.04 0.19 16 10 H 0.12 -0.60 8.14 -2.39 -0.02 -0.62 16 11 C 0.08 0.15 5.30 71.98 0.38 0.53 16 12 O -0.35 -1.22 9.45 -56.79 -0.54 -1.75 16 13 C 0.51 3.56 7.89 70.25 0.55 4.11 16 14 O -0.54 -7.07 16.12 19.81 0.32 -6.75 16 15 C -0.14 -0.45 5.88 -20.06 -0.12 -0.57 16 16 C -0.06 -0.17 9.53 22.27 0.21 0.04 16 17 C -0.12 -0.17 9.66 22.26 0.22 0.04 16 18 C 0.02 0.01 5.88 -20.05 -0.12 -0.11 16 19 C 0.01 0.01 7.02 24.23 0.17 0.18 16 20 C -0.17 0.22 10.26 22.40 0.23 0.45 16 21 C -0.18 0.06 10.78 22.11 0.24 0.30 16 22 C -0.05 -0.02 6.21 24.91 0.15 0.13 16 23 C -0.03 0.07 2.98 71.23 0.21 0.28 16 24 O -0.53 -0.25 12.88 -148.98 -1.92 -2.17 16 25 Si 0.77 -1.09 32.11 68.60 2.20 1.11 16 26 O -0.17 -0.43 8.79 -5.95 -0.05 -0.48 16 27 C -0.11 0.35 9.50 22.26 0.21 0.56 16 28 C -0.05 0.09 9.56 22.27 0.21 0.30 16 29 C -0.13 0.22 7.48 31.12 0.23 0.45 16 30 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 31 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H 0.07 -0.25 6.25 -2.38 -0.01 -0.26 16 33 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.08 -0.28 8.14 -2.38 -0.02 -0.29 16 35 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.06 -0.19 7.02 -2.38 -0.02 -0.21 16 37 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 38 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.08 0.17 7.92 -2.38 -0.02 0.15 16 40 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 41 H 0.07 0.16 8.14 -2.38 -0.02 0.14 16 42 H 0.06 0.26 7.87 -2.39 -0.02 0.24 16 43 H 0.14 0.47 7.64 -2.91 -0.02 0.44 16 44 H 0.14 -0.06 7.90 -2.91 -0.02 -0.09 16 45 H 0.18 -1.21 7.25 -2.91 -0.02 -1.23 16 46 H 0.17 -0.50 8.06 -2.91 -0.02 -0.52 16 47 H 0.16 -0.91 7.96 -2.39 -0.02 -0.93 16 48 H 0.39 -1.71 8.70 -74.05 -0.64 -2.35 16 49 H -0.28 -1.16 7.11 99.48 0.71 -0.45 16 50 H -0.29 -1.45 7.11 99.48 0.71 -0.75 16 51 H 0.17 -1.48 6.97 -2.91 -0.02 -1.50 16 52 H 0.16 -0.98 7.59 -2.91 -0.02 -1.00 16 53 H 0.09 -0.38 8.14 -2.38 -0.02 -0.40 16 54 H 0.08 0.05 8.10 -2.39 -0.02 0.03 16 Total: 0.00 -17.65 446.83 3.73 -13.93 By element: Atomic # 1 Polarization: -11.22 SS G_CDS: 0.30 Total: -10.92 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 4.90 Total: 9.92 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -3.68 Total: -14.03 kcal Atomic # 14 Polarization: -1.09 SS G_CDS: 2.20 Total: 1.11 kcal Total: -17.65 3.73 -13.93 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_3706302_14598394.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.487 kcal (2) G-P(sol) polarization free energy of solvation -17.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds