Wall clock time and date at job start Sat Mar 6 2021 08:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86302 * 109.47089 * 2 1 4 4 C 1.50700 * 109.46828 * 119.99375 * 2 1 3 5 5 C 1.34856 * 125.65121 * 65.00884 * 4 2 1 6 6 C 1.40782 * 107.05260 * 179.97438 * 5 4 2 7 7 C 1.36132 * 106.73196 * 0.23955 * 6 5 4 8 8 C 1.47528 * 125.94626 * 179.75624 * 7 6 5 9 9 C 1.39851 * 119.99499 * 359.72667 * 8 7 6 10 10 C 1.36539 * 120.00205 * 179.72038 * 9 8 7 11 11 C 1.39882 * 119.99700 * 0.52625 * 10 9 8 12 12 C 1.47446 * 120.00362 * 179.76542 * 11 10 9 13 13 O 1.21511 * 120.00070 * 179.97438 * 12 11 10 14 14 O 1.34762 * 120.00294 * 359.97438 * 12 11 10 15 15 C 1.45200 * 117.00397 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47189 * 180.02562 * 15 14 12 17 17 H 1.09005 * 109.47202 * 304.99786 * 16 15 14 18 18 C 1.53002 * 109.47479 * 64.99805 * 16 15 14 19 19 C 1.52997 * 109.47140 * 180.02562 * 18 16 15 20 20 C 1.53005 * 109.46812 * 299.99667 * 19 18 16 21 21 H 1.08996 * 109.47128 * 299.99859 * 20 19 18 22 22 O 1.42899 * 109.46877 * 180.02562 * 20 19 18 23 23 C 1.52999 * 109.47148 * 60.00577 * 20 19 18 24 24 C 1.52998 * 109.46972 * 299.99963 * 23 20 19 25 25 C 1.39880 * 119.99228 * 359.74817 * 11 10 9 26 26 C 1.36543 * 119.99334 * 359.97438 * 25 11 10 27 27 O 1.34232 * 125.65412 * 244.95510 * 4 2 1 28 28 H 0.96694 * 114.00620 * 300.00203 * 1 2 3 29 29 H 1.08997 * 109.47784 * 239.99683 * 2 1 3 30 30 H 1.48497 * 110.00208 * 178.67840 * 3 2 1 31 31 H 1.48500 * 109.99429 * 299.99563 * 3 2 1 32 32 H 1.07998 * 126.47123 * 359.92298 * 5 4 2 33 33 H 1.08002 * 126.62935 * 179.97438 * 6 5 4 34 34 H 1.08002 * 119.99280 * 359.97438 * 9 8 7 35 35 H 1.08002 * 120.00053 * 180.25477 * 10 9 8 36 36 H 1.08997 * 109.46749 * 300.00035 * 15 14 12 37 37 H 1.09000 * 109.47199 * 59.99933 * 15 14 12 38 38 H 1.08999 * 109.46930 * 300.00181 * 18 16 15 39 39 H 1.08997 * 109.46590 * 59.99836 * 18 16 15 40 40 H 1.08998 * 109.46845 * 180.02562 * 19 18 16 41 41 H 1.08988 * 109.47300 * 59.99824 * 19 18 16 42 42 H 0.96696 * 114.00347 * 60.00067 * 22 20 19 43 43 H 1.08999 * 109.47083 * 179.97438 * 23 20 19 44 44 H 1.09005 * 109.47115 * 59.99704 * 23 20 19 45 45 H 1.09005 * 109.46989 * 299.99817 * 24 23 20 46 46 H 1.09002 * 109.47512 * 180.02562 * 24 23 20 47 47 H 1.07997 * 120.00024 * 179.97438 * 25 11 10 48 48 H 1.08008 * 119.99938 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9312 -0.7103 1.2306 5 6 1.7567 -2.0181 1.5095 6 6 2.3807 -2.2630 2.7474 7 6 2.9035 -1.0772 3.1642 8 6 3.6467 -0.8515 4.4185 9 6 3.8618 -1.9122 5.3042 10 6 4.5546 -1.7047 6.4624 11 6 5.0396 -0.4288 6.7682 12 6 5.7833 -0.2035 8.0213 13 8 6.2050 0.9048 8.2867 14 8 5.9953 -1.2266 8.8724 15 6 6.7344 -0.9316 10.0869 16 6 6.8750 -2.2066 10.9207 17 1 5.8881 -2.6311 11.1049 18 6 7.7327 -3.2208 10.1612 19 6 7.8727 -4.4961 10.9949 20 6 8.5409 -4.1616 12.3301 21 1 9.5280 -3.7375 12.1462 22 8 8.6723 -5.3528 13.1085 23 6 7.6833 -3.1475 13.0896 24 6 7.5431 -1.8723 12.2559 25 6 4.8194 0.6332 5.8849 26 6 4.1315 0.4241 4.7241 27 8 2.6273 -0.1463 2.2302 28 1 -0.3934 0.4417 0.7649 29 1 1.7924 -0.5138 -0.8899 30 1 3.5345 1.7704 0.0322 31 1 1.5614 2.4677 -1.2086 32 1 1.2358 -2.7408 0.8990 33 1 2.4309 -3.2080 3.2680 34 1 3.4835 -2.8963 5.0701 35 1 4.7243 -2.5247 7.1445 36 1 7.7244 -0.5564 9.8275 37 1 6.1994 -0.1770 10.6635 38 1 7.2565 -3.4593 9.2102 39 1 8.7196 -2.7964 9.9771 40 1 8.4841 -5.2184 10.4539 41 1 6.8858 -4.9202 11.1786 42 1 9.2051 -6.0411 12.6873 43 1 8.1590 -2.9096 14.0410 44 1 6.6961 -3.5718 13.2734 45 1 8.5302 -1.4480 12.0721 46 1 6.9324 -1.1496 12.7972 47 1 5.1935 1.6184 6.1210 48 1 3.9618 1.2440 4.0417 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_3706302_16737258.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:43:02 Heat of formation + Delta-G solvation = -135.078360 kcal Electronic energy + Delta-G solvation = -30542.668342 eV Core-core repulsion = 26109.319388 eV Total energy + Delta-G solvation = -4433.348954 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.154 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.75987 -41.66500 -40.33531 -39.76869 -38.06214 -37.68433 -36.55108 -34.41717 -33.59711 -32.41344 -31.92855 -31.91658 -30.67419 -27.55642 -26.45649 -24.70677 -24.08040 -23.88965 -22.71043 -22.27583 -22.02469 -21.32989 -20.95084 -19.34658 -18.87083 -18.26864 -18.14346 -17.70969 -17.47638 -17.46349 -16.72059 -16.53491 -16.06672 -15.81188 -15.76410 -15.56170 -15.32292 -15.02489 -14.81388 -14.58849 -14.36689 -14.29065 -14.08424 -14.00964 -13.91165 -13.78474 -13.56811 -13.31725 -13.22813 -13.10661 -12.83782 -12.59430 -12.23696 -12.21484 -12.14260 -11.93778 -11.76158 -11.59253 -11.46886 -11.19166 -11.17618 -10.77788 -10.76951 -10.62003 -10.30190 -9.05374 -5.09895 -0.86978 0.22821 0.59253 1.07997 1.31348 1.41736 1.54060 1.71305 1.75248 1.87786 2.68807 3.09950 3.16282 3.27714 3.44254 3.53484 3.55689 3.65847 3.72033 3.75428 3.84050 3.91584 3.99144 4.07490 4.09188 4.18968 4.20938 4.26174 4.26858 4.32611 4.37540 4.41387 4.46701 4.52296 4.62788 4.70391 4.73198 4.81592 4.81826 4.85791 4.96701 4.98587 5.06490 5.07185 5.08933 5.12087 5.17350 5.23244 5.31711 5.37013 5.42353 5.57087 5.93666 6.33448 6.66878 6.71170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.028 4.028 3 Si 0.701 3.299 4 C -0.045 4.045 5 C -0.174 4.174 6 C -0.177 4.177 7 C 0.022 3.978 8 C 0.023 3.977 9 C -0.112 4.112 10 C -0.054 4.054 11 C -0.124 4.124 12 C 0.509 3.491 13 O -0.503 6.503 14 O -0.350 6.350 15 C 0.072 3.928 16 C -0.089 4.089 17 H 0.086 0.914 18 C -0.112 4.112 19 C -0.152 4.152 20 C 0.102 3.898 21 H 0.055 0.945 22 O -0.569 6.569 23 C -0.111 4.111 24 C -0.111 4.111 25 C -0.047 4.047 26 C -0.115 4.115 27 O -0.161 6.161 28 H 0.384 0.616 29 H 0.134 0.866 30 H -0.253 1.253 31 H -0.246 1.246 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.379 0.621 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.144 0.856 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.700 -1.515 0.147 1.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.139 4.139 3 Si 0.600 3.400 4 C -0.096 4.096 5 C -0.193 4.193 6 C -0.196 4.196 7 C -0.028 4.028 8 C 0.023 3.977 9 C -0.130 4.130 10 C -0.072 4.072 11 C -0.125 4.125 12 C 0.354 3.646 13 O -0.392 6.392 14 O -0.267 6.267 15 C -0.001 4.001 16 C -0.107 4.107 17 H 0.105 0.895 18 C -0.150 4.150 19 C -0.190 4.190 20 C 0.043 3.957 21 H 0.073 0.927 22 O -0.375 6.375 23 C -0.149 4.149 24 C -0.148 4.148 25 C -0.066 4.066 26 C -0.133 4.133 27 O -0.058 6.058 28 H 0.232 0.768 29 H 0.151 0.849 30 H -0.177 1.177 31 H -0.170 1.170 32 H 0.173 0.827 33 H 0.174 0.826 34 H 0.157 0.843 35 H 0.163 0.837 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.226 0.774 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.162 0.838 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.268 -0.253 -0.288 0.468 hybrid contribution 0.452 -1.127 -0.494 1.311 sum 0.184 -1.380 -0.782 1.597 Atomic orbital electron populations 1.86563 1.16091 1.81741 1.49166 1.24426 0.85251 1.11307 0.92884 0.94251 0.81605 0.76851 0.87250 1.23007 1.00433 0.93907 0.92225 1.21588 1.03955 0.95691 0.98070 1.21933 1.01979 0.98414 0.97310 1.20370 1.03924 0.87500 0.91000 1.18066 0.95446 0.94462 0.89768 1.20815 0.99812 0.98737 0.93662 1.21128 0.93753 0.96192 0.96129 1.19254 1.03822 0.95572 0.93860 1.21063 0.77392 0.82487 0.83655 1.90874 1.48127 1.24777 1.75379 1.86510 1.69138 1.39299 1.31762 1.23194 0.96117 0.98235 0.82589 1.21274 1.01027 0.94185 0.94250 0.89522 1.21534 1.00015 0.94633 0.98794 1.22275 1.02301 0.98097 0.96285 1.21852 0.97908 0.85795 0.90097 0.92713 1.86518 1.75927 1.27047 1.48005 1.21438 1.00786 0.93915 0.98715 1.21476 1.01432 0.97584 0.94331 1.20988 0.94651 0.98979 0.91941 1.21013 0.98311 0.96548 0.97436 1.83931 1.57630 1.37959 1.26309 0.76790 0.84912 1.17664 1.16986 0.82714 0.82629 0.84343 0.83657 0.90828 0.90724 0.90712 0.91690 0.91499 0.90881 0.77385 0.90767 0.90898 0.91167 0.90620 0.83803 0.84135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.37 12.88 -35.23 -0.45 -0.09 16 2 C -0.03 0.02 2.98 36.01 0.11 0.13 16 3 Si 0.70 -0.84 32.11 -169.99 -5.46 -6.30 16 4 C -0.05 -0.02 6.21 -35.51 -0.22 -0.24 16 5 C -0.17 -0.08 10.78 -39.82 -0.43 -0.51 16 6 C -0.18 -0.01 10.26 -39.38 -0.40 -0.42 16 7 C 0.02 0.02 7.02 -36.55 -0.26 -0.24 16 8 C 0.02 0.00 5.88 -104.91 -0.62 -0.61 16 9 C -0.11 0.13 9.50 -39.59 -0.38 -0.25 16 10 C -0.05 0.04 9.56 -39.58 -0.38 -0.33 16 11 C -0.12 -0.11 5.88 -104.92 -0.62 -0.73 16 12 C 0.51 1.21 7.89 34.48 0.27 1.48 16 13 O -0.50 -2.51 16.12 -19.27 -0.31 -2.82 16 14 O -0.35 -0.33 9.00 -40.66 -0.37 -0.70 16 15 C 0.07 -0.02 4.85 37.16 0.18 0.16 16 16 C -0.09 0.13 2.43 -90.62 -0.22 -0.09 16 17 H 0.09 -0.11 8.14 -51.93 -0.42 -0.53 16 18 C -0.11 0.18 5.10 -26.73 -0.14 0.04 16 19 C -0.15 0.23 5.55 -26.73 -0.15 0.08 16 20 C 0.10 -0.06 3.47 -26.73 -0.09 -0.15 16 21 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 22 O -0.57 -0.43 13.32 -35.23 -0.47 -0.90 16 23 C -0.11 0.07 5.57 -26.73 -0.15 -0.08 16 24 C -0.11 0.20 5.20 -26.73 -0.14 0.06 16 25 C -0.05 -0.02 9.53 -39.58 -0.38 -0.40 16 26 C -0.12 0.01 9.66 -39.59 -0.38 -0.38 16 27 O -0.16 -0.16 8.79 4.71 0.04 -0.12 16 28 H 0.38 -1.69 8.70 45.56 0.40 -1.30 16 29 H 0.13 -0.17 7.96 -51.93 -0.41 -0.58 16 30 H -0.25 -0.44 7.11 56.52 0.40 -0.04 16 31 H -0.25 -0.31 7.11 56.52 0.40 0.09 16 32 H 0.16 -0.10 8.06 -52.49 -0.42 -0.53 16 33 H 0.16 -0.33 7.25 -52.49 -0.38 -0.71 16 34 H 0.14 -0.45 6.97 -52.49 -0.37 -0.81 16 35 H 0.15 -0.35 7.59 -52.49 -0.40 -0.75 16 36 H 0.07 0.00 8.14 -51.93 -0.42 -0.43 16 37 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 38 H 0.07 -0.10 7.82 -51.93 -0.41 -0.50 16 39 H 0.06 -0.10 8.14 -51.93 -0.42 -0.53 16 40 H 0.07 -0.14 8.14 -51.93 -0.42 -0.57 16 41 H 0.07 -0.06 8.14 -51.94 -0.42 -0.48 16 42 H 0.38 -1.16 9.08 45.56 0.41 -0.75 16 43 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 44 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 45 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 46 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 47 H 0.14 0.01 7.64 -52.49 -0.40 -0.39 16 48 H 0.14 -0.19 7.90 -52.48 -0.41 -0.60 16 LS Contribution 402.26 15.07 6.06 6.06 Total: 0.00 -8.08 402.26 -11.58 -19.66 By element: Atomic # 1 Polarization: -6.10 SS G_CDS: -6.24 Total: -12.34 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -4.38 Total: -2.46 kcal Atomic # 8 Polarization: -3.06 SS G_CDS: -1.56 Total: -4.61 kcal Atomic # 14 Polarization: -0.84 SS G_CDS: -5.46 Total: -6.30 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -8.08 -11.58 -19.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_3706302_16737258.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.421 kcal (2) G-P(sol) polarization free energy of solvation -8.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds