Wall clock time and date at job start Sat Mar 6 2021 08:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86302 * 109.47089 * 2 1 4 4 C 1.50700 * 109.46828 * 119.99375 * 2 1 3 5 5 C 1.34856 * 125.65121 * 65.00884 * 4 2 1 6 6 C 1.40782 * 107.05260 * 179.97438 * 5 4 2 7 7 C 1.36132 * 106.73196 * 0.23955 * 6 5 4 8 8 C 1.47528 * 125.94626 * 179.75624 * 7 6 5 9 9 C 1.39851 * 119.99499 * 359.72667 * 8 7 6 10 10 C 1.36539 * 120.00205 * 179.72038 * 9 8 7 11 11 C 1.39882 * 119.99700 * 0.52625 * 10 9 8 12 12 C 1.47446 * 120.00362 * 179.76542 * 11 10 9 13 13 O 1.21511 * 120.00070 * 179.97438 * 12 11 10 14 14 O 1.34762 * 120.00294 * 359.97438 * 12 11 10 15 15 C 1.45200 * 117.00397 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47189 * 180.02562 * 15 14 12 17 17 H 1.09005 * 109.47202 * 304.99786 * 16 15 14 18 18 C 1.53002 * 109.47479 * 64.99805 * 16 15 14 19 19 C 1.52997 * 109.47140 * 180.02562 * 18 16 15 20 20 C 1.53005 * 109.46812 * 299.99667 * 19 18 16 21 21 H 1.08996 * 109.47128 * 299.99859 * 20 19 18 22 22 O 1.42899 * 109.46877 * 180.02562 * 20 19 18 23 23 C 1.52999 * 109.47148 * 60.00577 * 20 19 18 24 24 C 1.52998 * 109.46972 * 299.99963 * 23 20 19 25 25 C 1.39880 * 119.99228 * 359.74817 * 11 10 9 26 26 C 1.36543 * 119.99334 * 359.97438 * 25 11 10 27 27 O 1.34232 * 125.65412 * 244.95510 * 4 2 1 28 28 H 0.96694 * 114.00620 * 300.00203 * 1 2 3 29 29 H 1.08997 * 109.47784 * 239.99683 * 2 1 3 30 30 H 1.48497 * 110.00208 * 178.67840 * 3 2 1 31 31 H 1.48500 * 109.99429 * 299.99563 * 3 2 1 32 32 H 1.07998 * 126.47123 * 359.92298 * 5 4 2 33 33 H 1.08002 * 126.62935 * 179.97438 * 6 5 4 34 34 H 1.08002 * 119.99280 * 359.97438 * 9 8 7 35 35 H 1.08002 * 120.00053 * 180.25477 * 10 9 8 36 36 H 1.08997 * 109.46749 * 300.00035 * 15 14 12 37 37 H 1.09000 * 109.47199 * 59.99933 * 15 14 12 38 38 H 1.08999 * 109.46930 * 300.00181 * 18 16 15 39 39 H 1.08997 * 109.46590 * 59.99836 * 18 16 15 40 40 H 1.08998 * 109.46845 * 180.02562 * 19 18 16 41 41 H 1.08988 * 109.47300 * 59.99824 * 19 18 16 42 42 H 0.96696 * 114.00347 * 60.00067 * 22 20 19 43 43 H 1.08999 * 109.47083 * 179.97438 * 23 20 19 44 44 H 1.09005 * 109.47115 * 59.99704 * 23 20 19 45 45 H 1.09005 * 109.46989 * 299.99817 * 24 23 20 46 46 H 1.09002 * 109.47512 * 180.02562 * 24 23 20 47 47 H 1.07997 * 120.00024 * 179.97438 * 25 11 10 48 48 H 1.08008 * 119.99938 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9312 -0.7103 1.2306 5 6 1.7567 -2.0181 1.5095 6 6 2.3807 -2.2630 2.7474 7 6 2.9035 -1.0772 3.1642 8 6 3.6467 -0.8515 4.4185 9 6 3.8618 -1.9122 5.3042 10 6 4.5546 -1.7047 6.4624 11 6 5.0396 -0.4288 6.7682 12 6 5.7833 -0.2035 8.0213 13 8 6.2050 0.9048 8.2867 14 8 5.9953 -1.2266 8.8724 15 6 6.7344 -0.9316 10.0869 16 6 6.8750 -2.2066 10.9207 17 1 5.8881 -2.6311 11.1049 18 6 7.7327 -3.2208 10.1612 19 6 7.8727 -4.4961 10.9949 20 6 8.5409 -4.1616 12.3301 21 1 9.5280 -3.7375 12.1462 22 8 8.6723 -5.3528 13.1085 23 6 7.6833 -3.1475 13.0896 24 6 7.5431 -1.8723 12.2559 25 6 4.8194 0.6332 5.8849 26 6 4.1315 0.4241 4.7241 27 8 2.6273 -0.1463 2.2302 28 1 -0.3934 0.4417 0.7649 29 1 1.7924 -0.5138 -0.8899 30 1 3.5345 1.7704 0.0322 31 1 1.5614 2.4677 -1.2086 32 1 1.2358 -2.7408 0.8990 33 1 2.4309 -3.2080 3.2680 34 1 3.4835 -2.8963 5.0701 35 1 4.7243 -2.5247 7.1445 36 1 7.7244 -0.5564 9.8275 37 1 6.1994 -0.1770 10.6635 38 1 7.2565 -3.4593 9.2102 39 1 8.7196 -2.7964 9.9771 40 1 8.4841 -5.2184 10.4539 41 1 6.8858 -4.9202 11.1786 42 1 9.2051 -6.0411 12.6873 43 1 8.1590 -2.9096 14.0410 44 1 6.6961 -3.5718 13.2734 45 1 8.5302 -1.4480 12.0721 46 1 6.9324 -1.1496 12.7972 47 1 5.1935 1.6184 6.1210 48 1 3.9618 1.2440 4.0417 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_3706302_16737258.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:43:00 Heat of formation + Delta-G solvation = -130.776306 kcal Electronic energy + Delta-G solvation = -30542.481791 eV Core-core repulsion = 26109.319388 eV Total energy + Delta-G solvation = -4433.162403 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.154 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.74272 -41.76449 -40.27576 -39.75586 -37.98790 -37.78487 -36.56032 -34.40383 -33.57923 -32.36601 -31.88992 -31.81595 -30.64382 -27.54655 -26.42035 -24.69591 -24.03733 -23.78850 -22.68865 -22.22972 -22.04429 -21.31575 -20.86214 -19.32792 -18.90242 -18.25860 -18.14600 -17.72601 -17.55827 -17.45780 -16.68447 -16.47924 -16.03124 -15.76241 -15.72903 -15.49626 -15.29276 -15.00493 -14.72205 -14.52206 -14.36247 -14.33432 -14.05344 -13.96093 -13.88623 -13.78643 -13.58139 -13.22062 -13.16896 -13.08199 -12.78098 -12.56451 -12.25131 -12.16339 -12.12890 -11.96031 -11.73318 -11.63132 -11.50380 -11.17632 -11.09105 -10.75304 -10.70140 -10.58344 -10.24107 -9.03787 -5.03864 -0.87665 0.28991 0.57411 1.14076 1.28815 1.43667 1.48539 1.70351 1.75490 1.88493 2.70693 3.20101 3.23661 3.38648 3.47734 3.61909 3.63652 3.73647 3.78830 3.81170 3.89902 3.98147 4.05213 4.14541 4.15943 4.24646 4.28535 4.33242 4.35745 4.38012 4.48505 4.49416 4.53598 4.56999 4.67191 4.76475 4.81755 4.88451 4.91125 4.95905 5.05226 5.08091 5.12985 5.14796 5.16389 5.18351 5.23091 5.31276 5.33123 5.42736 5.45721 5.62950 5.96057 6.58029 6.60302 6.86669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.026 4.026 3 Si 0.773 3.227 4 C -0.051 4.051 5 C -0.185 4.185 6 C -0.176 4.176 7 C 0.006 3.994 8 C 0.017 3.983 9 C -0.108 4.108 10 C -0.047 4.047 11 C -0.140 4.140 12 C 0.510 3.490 13 O -0.537 6.537 14 O -0.346 6.346 15 C 0.070 3.930 16 C -0.081 4.081 17 H 0.086 0.914 18 C -0.110 4.110 19 C -0.145 4.145 20 C 0.099 3.901 21 H 0.060 0.940 22 O -0.591 6.591 23 C -0.112 4.112 24 C -0.106 4.106 25 C -0.055 4.055 26 C -0.121 4.121 27 O -0.171 6.171 28 H 0.399 0.601 29 H 0.137 0.863 30 H -0.294 1.294 31 H -0.279 1.279 32 H 0.164 0.836 33 H 0.178 0.822 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.393 0.607 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.140 0.860 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.189 -2.760 0.014 3.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.137 4.137 3 Si 0.678 3.322 4 C -0.101 4.101 5 C -0.205 4.205 6 C -0.195 4.195 7 C -0.043 4.043 8 C 0.017 3.983 9 C -0.126 4.126 10 C -0.065 4.065 11 C -0.141 4.141 12 C 0.357 3.643 13 O -0.429 6.429 14 O -0.262 6.262 15 C -0.004 4.004 16 C -0.100 4.100 17 H 0.104 0.896 18 C -0.148 4.148 19 C -0.183 4.183 20 C 0.041 3.959 21 H 0.078 0.922 22 O -0.399 6.399 23 C -0.150 4.150 24 C -0.144 4.144 25 C -0.073 4.073 26 C -0.139 4.139 27 O -0.068 6.068 28 H 0.250 0.750 29 H 0.154 0.846 30 H -0.221 1.221 31 H -0.205 1.205 32 H 0.182 0.818 33 H 0.195 0.805 34 H 0.181 0.819 35 H 0.181 0.819 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.243 0.757 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.099 0.901 47 H 0.158 0.842 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.775 -1.523 -0.402 1.755 hybrid contribution 0.611 -0.761 -0.482 1.089 sum -0.164 -2.284 -0.885 2.455 Atomic orbital electron populations 1.86530 1.15934 1.82111 1.50342 1.24461 0.85397 1.11165 0.92650 0.93331 0.78078 0.75501 0.85293 1.23240 1.00324 0.94238 0.92341 1.21828 1.04216 0.95898 0.98510 1.22241 1.01107 0.99007 0.97127 1.20579 1.04590 0.87849 0.91272 1.18230 0.95366 0.94823 0.89890 1.21082 0.99061 0.99467 0.92943 1.21313 0.92952 0.95817 0.96432 1.19324 1.04680 0.96587 0.93516 1.21362 0.76782 0.82147 0.83991 1.90852 1.49764 1.26034 1.76208 1.86509 1.69011 1.38748 1.31927 1.23296 0.95856 0.98918 0.82293 1.21216 1.01112 0.93529 0.94106 0.89574 1.21517 1.00058 0.94512 0.98675 1.22204 1.01973 0.98238 0.95878 1.21924 0.98218 0.85486 0.90302 0.92234 1.86479 1.76487 1.27908 1.49027 1.21445 1.00345 0.94423 0.98742 1.21442 1.01786 0.97175 0.93977 1.21013 0.95019 0.98970 0.92268 1.21110 0.98308 0.97079 0.97363 1.83915 1.57886 1.38408 1.26602 0.74977 0.84555 1.22093 1.20512 0.81835 0.80474 0.81868 0.81931 0.91018 0.90932 0.90736 0.91477 0.90589 0.91560 0.75737 0.91341 0.91633 0.90698 0.90117 0.84179 0.83457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.10 12.88 -148.98 -1.92 -0.82 16 2 C -0.03 0.05 2.98 71.24 0.21 0.26 16 3 Si 0.77 -1.41 32.11 68.60 2.20 0.80 16 4 C -0.05 -0.03 6.21 24.91 0.15 0.13 16 5 C -0.19 -0.01 10.78 22.11 0.24 0.23 16 6 C -0.18 0.19 10.26 22.40 0.23 0.42 16 7 C 0.01 0.01 7.02 24.23 0.17 0.18 16 8 C 0.02 0.00 5.88 -20.05 -0.12 -0.12 16 9 C -0.11 0.38 9.50 22.26 0.21 0.59 16 10 C -0.05 0.12 9.56 22.27 0.21 0.33 16 11 C -0.14 -0.31 5.88 -20.06 -0.12 -0.43 16 12 C 0.51 2.84 7.89 70.25 0.55 3.40 16 13 O -0.54 -6.17 16.12 19.80 0.32 -5.85 16 14 O -0.35 -0.72 9.00 -56.72 -0.51 -1.23 16 15 C 0.07 -0.01 4.85 71.98 0.35 0.34 16 16 C -0.08 0.25 2.43 -10.79 -0.03 0.23 16 17 H 0.09 -0.24 8.14 -2.38 -0.02 -0.25 16 18 C -0.11 0.40 5.10 30.59 0.16 0.55 16 19 C -0.15 0.50 5.55 30.59 0.17 0.67 16 20 C 0.10 -0.13 3.47 30.60 0.11 -0.03 16 21 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 22 O -0.59 -0.87 13.32 -148.98 -1.98 -2.85 16 23 C -0.11 0.12 5.57 30.59 0.17 0.29 16 24 C -0.11 0.39 5.20 30.59 0.16 0.55 16 25 C -0.05 -0.11 9.53 22.27 0.21 0.10 16 26 C -0.12 -0.05 9.66 22.26 0.21 0.16 16 27 O -0.17 -0.34 8.79 -6.07 -0.05 -0.39 16 28 H 0.40 -3.84 8.70 -74.06 -0.64 -4.48 16 29 H 0.14 -0.37 7.96 -2.39 -0.02 -0.39 16 30 H -0.29 -1.49 7.11 99.48 0.71 -0.78 16 31 H -0.28 -0.99 7.11 99.48 0.71 -0.28 16 32 H 0.16 -0.38 8.06 -2.91 -0.02 -0.40 16 33 H 0.18 -1.14 7.25 -2.91 -0.02 -1.16 16 34 H 0.16 -1.45 6.97 -2.91 -0.02 -1.47 16 35 H 0.16 -1.03 7.59 -2.91 -0.02 -1.05 16 36 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.07 -0.24 7.82 -2.39 -0.02 -0.26 16 39 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 40 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 41 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 42 H 0.39 -2.48 9.08 -74.06 -0.67 -3.16 16 43 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 44 H 0.06 0.02 8.14 -2.38 -0.02 0.00 16 45 H 0.07 -0.33 8.14 -2.38 -0.02 -0.35 16 46 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 47 H 0.14 0.29 7.64 -2.91 -0.02 0.26 16 48 H 0.15 -0.27 7.90 -2.91 -0.02 -0.29 16 Total: 0.00 -18.95 402.26 1.03 -17.92 By element: Atomic # 1 Polarization: -15.15 SS G_CDS: -0.29 Total: -15.44 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 3.26 Total: 7.86 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -4.15 Total: -11.13 kcal Atomic # 14 Polarization: -1.41 SS G_CDS: 2.20 Total: 0.80 kcal Total: -18.95 1.03 -17.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_3706302_16737258.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.858 kcal (2) G-P(sol) polarization free energy of solvation -18.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds