Wall clock time and date at job start Sat Mar 6 2021 09:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 114.00147 * 2 1 4 4 C 1.53002 * 112.84757 * 294.01703 * 3 2 1 5 5 F 1.39898 * 109.47009 * 195.94584 * 4 3 2 6 6 F 1.39900 * 109.47418 * 315.94511 * 4 3 2 7 7 F 1.39898 * 109.47359 * 75.94645 * 4 3 2 8 8 C 1.54047 * 113.68658 * 162.74459 * 3 2 1 9 9 C 1.53780 * 86.98301 * 270.87084 * 8 3 2 10 10 H 1.08996 * 113.61613 * 219.97879 * 9 8 3 11 11 C 1.53005 * 113.61078 * 89.16685 * 9 8 3 12 12 O 1.45192 * 109.47216 * 85.86463 * 11 9 8 13 13 C 1.34773 * 117.00019 * 179.97438 * 12 11 9 14 14 O 1.21507 * 119.99499 * 359.97438 * 13 12 11 15 15 C 1.47439 * 120.00081 * 179.97438 * 13 12 11 16 16 C 1.39882 * 120.00462 * 359.72107 * 15 13 12 17 17 C 1.36545 * 119.99774 * 179.73904 * 16 15 13 18 18 C 1.39854 * 120.00217 * 0.56160 * 17 16 15 19 19 C 1.47515 * 119.99792 * 179.71756 * 18 17 16 20 20 C 1.36146 * 125.94793 * 359.68943 * 19 18 17 21 21 C 1.40775 * 106.73313 * 179.85561 * 20 19 18 22 22 C 1.34855 * 107.05197 * 0.40796 * 21 20 19 23 23 C 1.50701 * 125.64669 * 179.77908 * 22 21 20 24 24 O 1.42892 * 109.47123 * 64.99401 * 23 22 21 25 25 Si 1.86305 * 109.46672 * 184.98875 * 23 22 21 26 26 O 1.34224 * 108.69993 * 359.75215 * 22 21 20 27 27 C 1.39848 * 120.00660 * 359.69477 * 18 17 16 28 28 C 1.36556 * 120.00520 * 0.02562 * 27 18 17 29 29 C 1.53775 * 87.17491 * 334.57214 * 9 8 3 30 30 H 1.08998 * 109.46789 * 64.82568 * 1 2 3 31 31 H 1.08997 * 109.47225 * 184.82855 * 1 2 3 32 32 H 1.09004 * 109.46503 * 304.83200 * 1 2 3 33 33 H 1.09000 * 113.61022 * 156.37318 * 8 3 2 34 34 H 1.08997 * 113.70029 * 25.38782 * 8 3 2 35 35 H 1.08994 * 109.47136 * 325.85458 * 11 9 8 36 36 H 1.09001 * 109.46731 * 205.86037 * 11 9 8 37 37 H 1.08005 * 120.00267 * 0.02962 * 16 15 13 38 38 H 1.07998 * 120.00253 * 180.25774 * 17 16 15 39 39 H 1.07999 * 126.63104 * 359.97438 * 20 19 18 40 40 H 1.08000 * 126.47226 * 180.13965 * 21 20 19 41 41 H 1.08997 * 109.47590 * 304.98304 * 23 22 21 42 42 H 0.96696 * 114.00612 * 59.99418 * 24 23 22 43 43 H 1.48504 * 110.00000 * 180.02562 * 25 23 22 44 44 H 1.48500 * 109.99796 * 301.31972 * 25 23 22 45 45 H 1.07999 * 120.00109 * 180.02562 * 27 18 17 46 46 H 1.08003 * 120.00270 * 180.02562 * 28 27 18 47 47 H 1.09001 * 113.61424 * 140.01823 * 29 9 8 48 48 H 1.08999 * 113.61585 * 270.83865 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.7277 2.0816 -1.2879 5 9 2.6024 3.1696 -1.3781 6 9 1.9147 1.2404 -2.3900 7 9 0.4076 2.5445 -1.2733 8 6 3.4928 1.3228 0.4185 9 6 2.9983 1.4840 1.8656 10 1 3.5938 2.1807 2.4555 11 6 2.7568 0.1540 2.5825 12 8 4.0004 -0.3123 3.1692 13 6 3.9597 -1.4794 3.8421 14 8 2.9135 -2.0901 3.9361 15 6 5.1845 -2.0149 4.4639 16 6 6.3902 -1.3147 4.3506 17 6 7.5234 -1.8081 4.9311 18 6 7.4811 -3.0194 5.6289 19 6 8.7067 -3.5554 6.2507 20 6 9.9391 -2.9778 6.2158 21 6 10.8039 -3.8241 6.9353 22 6 10.0683 -4.8706 7.3623 23 6 10.5821 -6.0330 8.1722 24 8 11.0064 -5.5690 9.4553 25 14 9.2237 -7.2903 8.3845 26 8 8.8027 -4.7050 6.9471 27 6 6.2770 -3.7222 5.7377 28 6 5.1424 -3.2262 5.1622 29 6 1.7213 2.1085 1.2792 30 1 -0.3633 0.4371 -0.9301 31 1 -0.3633 -1.0240 0.0865 32 1 -0.3632 0.5870 0.8436 33 1 4.0415 2.1877 0.0457 34 1 4.0105 0.3811 0.2363 35 1 2.3935 -0.5836 1.8670 36 1 2.0145 0.2943 3.3682 37 1 6.4238 -0.3814 3.8080 38 1 8.4533 -1.2655 4.8473 39 1 10.2019 -2.0489 5.7315 40 1 11.8583 -3.6673 7.1084 41 1 11.4245 -6.4922 7.6549 42 1 10.3063 -5.1480 9.9727 43 1 9.7175 -8.4416 9.1821 44 1 8.0569 -6.6681 9.0602 45 1 6.2444 -4.6574 6.2770 46 1 4.2124 -3.7688 5.2466 47 1 0.8097 1.8005 1.7914 48 1 1.7860 3.1879 1.1427 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_3706302_17321610.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 09:23:29 Heat of formation + Delta-G solvation = -219.277686 kcal Electronic energy + Delta-G solvation = -38665.493930 eV Core-core repulsion = 32820.131892 eV Total energy + Delta-G solvation = -5845.362038 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 413.126 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -51.25052 -48.78163 -48.72547 -43.72840 -41.90564 -41.18238 -39.88031 -38.13492 -37.77884 -36.88447 -34.38729 -33.56196 -32.31628 -31.02668 -30.40629 -28.27200 -27.71872 -26.84091 -26.72523 -24.75383 -24.02151 -23.35861 -22.55727 -22.10561 -21.30199 -20.66397 -19.81446 -19.54532 -19.32799 -19.22036 -18.89158 -18.21447 -17.71122 -17.55494 -17.48529 -17.16527 -16.73646 -16.50714 -16.09144 -15.89584 -15.81070 -15.66427 -15.61759 -15.59559 -15.27623 -15.15562 -14.99483 -14.88452 -14.79701 -14.69679 -14.41470 -14.37043 -14.22892 -13.93795 -13.93208 -13.80117 -13.68265 -13.29931 -13.17473 -13.13322 -12.88308 -12.77688 -12.37461 -12.17902 -12.14859 -12.03122 -11.75039 -11.69525 -11.56751 -11.16185 -10.84717 -10.80526 -10.62605 -10.22386 -9.02294 -4.96956 -0.85933 0.30556 0.58913 1.13722 1.31909 1.44792 1.45959 1.53663 1.70332 1.73438 1.90132 2.08369 2.56872 2.63086 2.72407 2.88361 3.19591 3.24754 3.30531 3.33969 3.44646 3.57983 3.64955 3.80332 3.83495 3.91283 4.00293 4.16405 4.20601 4.23338 4.24493 4.32465 4.38055 4.42632 4.46362 4.52273 4.56046 4.62276 4.68923 4.70030 4.76764 4.79309 4.83961 4.90336 4.92685 5.00630 5.14837 5.17639 5.25587 5.33920 5.45185 5.64719 5.70434 5.96904 6.32720 6.59521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.348 6.348 3 C 0.030 3.970 4 C 0.433 3.567 5 F -0.174 7.174 6 F -0.189 7.189 7 F -0.185 7.185 8 C -0.111 4.111 9 C -0.091 4.091 10 H 0.127 0.873 11 C 0.075 3.925 12 O -0.344 6.344 13 C 0.511 3.489 14 O -0.536 6.536 15 C -0.140 4.140 16 C -0.046 4.046 17 C -0.107 4.107 18 C 0.017 3.983 19 C 0.006 3.994 20 C -0.175 4.175 21 C -0.183 4.183 22 C -0.050 4.050 23 C -0.035 4.035 24 O -0.535 6.535 25 Si 0.766 3.234 26 O -0.174 6.174 27 C -0.122 4.122 28 C -0.055 4.055 29 C -0.135 4.135 30 H 0.046 0.954 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.131 0.869 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.167 0.833 38 H 0.165 0.835 39 H 0.179 0.821 40 H 0.166 0.834 41 H 0.156 0.844 42 H 0.390 0.610 43 H -0.282 1.282 44 H -0.293 1.293 45 H 0.144 0.856 46 H 0.139 0.861 47 H 0.102 0.898 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.685 2.781 0.435 3.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.266 6.266 3 C -0.013 4.013 4 C 0.379 3.621 5 F -0.156 7.156 6 F -0.170 7.170 7 F -0.167 7.167 8 C -0.147 4.147 9 C -0.109 4.109 10 H 0.145 0.855 11 C 0.002 3.998 12 O -0.260 6.260 13 C 0.358 3.642 14 O -0.427 6.427 15 C -0.141 4.141 16 C -0.064 4.064 17 C -0.125 4.125 18 C 0.017 3.983 19 C -0.044 4.044 20 C -0.194 4.194 21 C -0.202 4.202 22 C -0.100 4.100 23 C -0.144 4.144 24 O -0.343 6.343 25 Si 0.670 3.330 26 O -0.071 6.071 27 C -0.140 4.140 28 C -0.073 4.073 29 C -0.172 4.172 30 H 0.065 0.935 31 H 0.127 0.873 32 H 0.088 0.912 33 H 0.149 0.851 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.184 0.816 38 H 0.183 0.817 39 H 0.196 0.804 40 H 0.183 0.817 41 H 0.174 0.826 42 H 0.240 0.760 43 H -0.209 1.209 44 H -0.220 1.220 45 H 0.162 0.838 46 H 0.157 0.843 47 H 0.120 0.880 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.263 1.602 0.818 2.891 hybrid contribution -0.708 0.951 0.363 1.239 sum 1.556 2.553 1.181 3.214 Atomic orbital electron populations 1.23253 0.78828 1.05131 1.01751 1.88080 1.22010 1.22711 1.93836 1.24340 1.00996 0.86189 0.89735 1.21497 0.74131 0.78715 0.87777 1.93172 1.69245 1.56512 1.96623 1.93187 1.94880 1.71322 1.57631 1.93181 1.36964 1.89693 1.96853 1.23402 0.90212 1.06003 0.95132 1.22042 0.98068 0.95493 0.95264 0.85527 1.23114 0.83317 0.96073 0.97307 1.86473 1.38861 1.36951 1.63727 1.21338 0.88710 0.78778 0.75385 1.90854 1.33417 1.59738 1.58738 1.19311 0.92047 0.98079 1.04630 1.21351 0.89911 0.99618 0.95496 1.21099 1.00377 0.94172 0.96831 1.18240 0.89366 0.94779 0.95952 1.20595 0.95543 0.87237 1.00977 1.22254 0.91077 1.02851 1.03185 1.21832 1.02059 0.94793 1.01480 1.23159 0.81690 1.01231 1.03924 1.24496 1.09561 0.96640 0.83713 1.86637 1.40753 1.79515 1.27437 0.93623 0.73795 0.76586 0.88991 1.83928 1.30220 1.37110 1.55860 1.21080 0.91251 1.01097 1.00592 1.21001 0.99408 0.93487 0.93439 1.23649 0.99764 1.01715 0.92121 0.93489 0.87345 0.91202 0.85072 0.89025 0.90298 0.90478 0.81586 0.81712 0.80362 0.81675 0.82650 0.76039 1.20893 1.21989 0.83823 0.84328 0.87988 0.85262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 10.30 113.37 1.17 1.16 16 2 O -0.35 -0.58 8.35 -148.98 -1.24 -1.82 16 3 C 0.03 -0.04 0.85 -10.18 -0.01 -0.05 16 4 C 0.43 0.82 2.52 71.98 0.18 1.01 16 5 F -0.17 -0.20 15.82 44.97 0.71 0.51 16 6 F -0.19 -1.19 17.10 44.97 0.77 -0.42 16 7 F -0.19 -0.50 15.39 44.97 0.69 0.20 16 8 C -0.11 0.47 6.92 31.21 0.22 0.69 16 9 C -0.09 0.53 4.20 -10.27 -0.04 0.48 16 10 H 0.13 -1.16 8.14 -2.39 -0.02 -1.18 16 11 C 0.08 -0.05 5.07 71.98 0.37 0.32 16 12 O -0.34 -0.46 9.45 -56.83 -0.54 -1.00 16 13 C 0.51 2.72 7.89 70.25 0.55 3.28 16 14 O -0.54 -6.12 16.12 19.81 0.32 -5.80 16 15 C -0.14 -0.28 5.88 -20.06 -0.12 -0.40 16 16 C -0.05 0.14 9.56 22.27 0.21 0.35 16 17 C -0.11 0.43 9.50 22.27 0.21 0.64 16 18 C 0.02 0.00 5.88 -20.05 -0.12 -0.12 16 19 C 0.01 0.01 7.02 24.23 0.17 0.18 16 20 C -0.17 0.27 10.26 22.40 0.23 0.50 16 21 C -0.18 0.09 10.78 22.11 0.24 0.33 16 22 C -0.05 -0.01 6.21 24.91 0.15 0.14 16 23 C -0.03 0.08 2.98 71.24 0.21 0.29 16 24 O -0.54 -0.16 12.88 -148.98 -1.92 -2.08 16 25 Si 0.77 -1.26 32.11 68.60 2.20 0.94 16 26 O -0.17 -0.38 8.79 -6.05 -0.05 -0.43 16 27 C -0.12 -0.09 9.66 22.27 0.22 0.12 16 28 C -0.06 -0.12 9.53 22.27 0.21 0.09 16 29 C -0.14 0.86 6.51 31.12 0.20 1.06 16 30 H 0.05 -0.02 6.69 -2.39 -0.02 -0.04 16 31 H 0.11 -0.37 8.14 -2.39 -0.02 -0.39 16 32 H 0.07 -0.34 6.55 -2.39 -0.02 -0.36 16 33 H 0.13 -0.93 7.02 -2.39 -0.02 -0.95 16 34 H 0.09 -0.23 8.10 -2.39 -0.02 -0.24 16 35 H 0.08 0.21 6.09 -2.39 -0.01 0.20 16 36 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 37 H 0.17 -1.23 7.60 -2.91 -0.02 -1.26 16 38 H 0.17 -1.58 6.97 -2.91 -0.02 -1.60 16 39 H 0.18 -1.26 7.25 -2.91 -0.02 -1.28 16 40 H 0.17 -0.51 8.06 -2.91 -0.02 -0.53 16 41 H 0.16 -0.92 7.96 -2.39 -0.02 -0.94 16 42 H 0.39 -1.79 8.70 -74.06 -0.64 -2.44 16 43 H -0.28 -1.12 7.11 99.48 0.71 -0.42 16 44 H -0.29 -1.35 7.11 99.48 0.71 -0.64 16 45 H 0.14 -0.13 7.90 -2.91 -0.02 -0.16 16 46 H 0.14 0.34 7.64 -2.91 -0.02 0.31 16 47 H 0.10 -0.75 6.63 -2.39 -0.02 -0.77 16 48 H 0.13 -1.18 8.05 -2.39 -0.02 -1.20 16 Total: 0.00 -19.43 417.34 5.64 -13.79 By element: Atomic # 1 Polarization: -14.39 SS G_CDS: 0.44 Total: -13.95 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 4.26 Total: 10.06 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -3.43 Total: -11.14 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 2.17 Total: 0.29 kcal Atomic # 14 Polarization: -1.26 SS G_CDS: 2.20 Total: 0.94 kcal Total: -19.43 5.64 -13.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_3706302_17321610.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.485 kcal (2) G-P(sol) polarization free energy of solvation -19.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds