Wall clock time and date at job start Sat Mar 6 2021 06:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86302 * 109.46815 * 2 1 4 4 C 1.86299 * 109.47221 * 239.99975 * 2 1 3 5 5 C 1.86299 * 109.47440 * 119.99988 * 2 1 3 6 6 O 1.45195 * 109.47340 * 59.99801 * 5 2 1 7 7 C 1.34768 * 116.99799 * 75.00126 * 6 5 2 8 8 O 1.21513 * 119.99815 * 0.02562 * 7 6 5 9 9 C 1.47432 * 120.00021 * 180.02562 * 7 6 5 10 10 C 1.39888 * 120.00448 * 179.97438 * 9 7 6 11 11 C 1.36546 * 119.99438 * 180.02562 * 10 9 7 12 12 C 1.39844 * 120.01066 * 0.02562 * 11 10 9 13 13 C 1.47514 * 120.00130 * 179.97438 * 12 11 10 14 14 C 1.36145 * 125.95025 * 180.02562 * 13 12 11 15 15 C 1.40771 * 106.73305 * 180.02562 * 14 13 12 16 16 C 1.34847 * 107.05707 * 359.97438 * 15 14 13 17 17 C 1.50700 * 125.65455 * 179.97438 * 16 15 14 18 18 O 1.42895 * 109.47426 * 300.00360 * 17 16 15 19 19 Si 1.86301 * 109.47225 * 179.97438 * 17 16 15 20 20 H 1.48503 * 109.47044 * 60.00421 * 19 17 16 21 21 H 1.48504 * 109.47027 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47349 * 300.00010 * 19 17 16 23 23 O 1.34234 * 108.69531 * 0.02562 * 16 15 14 24 24 C 1.39848 * 120.00169 * 0.27046 * 12 11 10 25 25 C 1.36547 * 120.00565 * 359.44385 * 24 12 11 26 26 H 1.09004 * 109.47340 * 299.99850 * 1 2 3 27 27 H 1.08998 * 109.47498 * 60.00505 * 1 2 3 28 28 H 1.09001 * 109.47056 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47049 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47149 * 299.99879 * 3 2 1 31 31 H 1.08996 * 109.47619 * 60.00150 * 3 2 1 32 32 H 1.08992 * 109.47053 * 299.99834 * 4 2 1 33 33 H 1.09001 * 109.47137 * 59.99880 * 4 2 1 34 34 H 1.08999 * 109.47608 * 179.97438 * 4 2 1 35 35 H 1.09005 * 109.46755 * 299.99883 * 5 2 1 36 36 H 1.09000 * 109.47278 * 180.02562 * 5 2 1 37 37 H 1.07998 * 120.00004 * 0.02562 * 10 9 7 38 38 H 1.08008 * 119.99812 * 180.02562 * 11 10 9 39 39 H 1.08001 * 126.62847 * 359.96990 * 14 13 12 40 40 H 1.08005 * 126.47337 * 179.97438 * 15 14 13 41 41 H 1.09002 * 109.46982 * 59.99913 * 17 16 15 42 42 H 0.96702 * 113.99525 * 300.00398 * 18 17 16 43 43 H 1.08001 * 119.99557 * 179.72807 * 24 12 11 44 44 H 1.08000 * 120.00233 * 180.25245 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4841 -0.8782 1.5211 6 8 2.0001 -2.2471 1.5212 7 6 2.5967 -3.1070 0.6721 8 8 3.4970 -2.7233 -0.0482 9 6 2.1571 -4.5132 0.6172 10 6 2.7759 -5.4056 -0.2645 11 6 2.3682 -6.7078 -0.3156 12 6 1.3318 -7.1492 0.5130 13 6 0.8911 -8.5559 0.4573 14 6 -0.1011 -9.1129 1.2049 15 6 -0.1810 -10.4669 0.8281 16 6 0.7552 -10.6693 -0.1211 17 6 1.0318 -11.9768 -0.8174 18 8 1.4097 -12.9601 0.1482 19 14 2.4148 -11.7466 -2.0443 20 1 3.6379 -11.2964 -1.3326 21 1 2.6878 -13.0353 -2.7299 22 1 2.0214 -10.7251 -3.0477 23 8 1.4006 -9.5133 -0.3422 24 6 0.7088 -6.2557 1.3901 25 6 1.1201 -4.9548 1.4457 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.5740 1.7566 -0.0005 30 1 2.1206 2.2703 -0.8900 31 1 2.1206 2.2704 0.8899 32 1 2.1207 -1.9058 -1.5211 33 1 2.1207 -0.3644 -2.4111 34 1 3.5740 -0.8779 -1.5214 35 1 2.1207 -0.3643 2.4111 36 1 3.5741 -0.8778 1.5213 37 1 3.5760 -5.0647 -0.9047 38 1 2.8462 -7.3971 -0.9960 39 1 -0.7087 -8.6128 1.9446 40 1 -0.8634 -11.2044 1.2244 41 1 0.1341 -12.3072 -1.3400 42 1 2.2028 -12.7318 0.6523 43 1 -0.0945 -6.5957 2.0268 44 1 0.6418 -4.2658 2.1260 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_3706302_4858416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:23:07 Heat of formation + Delta-G solvation = -106.336508 kcal Electronic energy + Delta-G solvation = -25607.527961 eV Core-core repulsion = 21808.739814 eV Total energy + Delta-G solvation = -3798.788147 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.124 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.74833 -41.58662 -39.92414 -38.06381 -37.29860 -34.40093 -33.55189 -32.34990 -30.79423 -29.70587 -28.50541 -28.36018 -28.27633 -26.77088 -24.60472 -24.04953 -22.52430 -22.03126 -21.28801 -19.35849 -18.86330 -18.18418 -17.73268 -17.52222 -17.33874 -16.87291 -16.01257 -15.83696 -15.77539 -15.14682 -14.81724 -14.78392 -14.62542 -14.27685 -14.21184 -14.02016 -13.96761 -13.91222 -13.84892 -13.75757 -13.41885 -13.27208 -13.16459 -13.06398 -12.98638 -12.84900 -12.51307 -12.23571 -12.18568 -12.06318 -11.49547 -11.15661 -10.92573 -10.79375 -10.77501 -10.56658 -10.39492 -10.28027 -9.02208 -0.83957 0.24892 0.61119 0.96834 1.30955 1.35384 1.41594 1.48284 1.50708 1.69802 1.77473 1.84679 1.86738 2.01752 2.51906 2.71997 3.17314 3.30082 3.54935 3.73797 3.77612 3.88081 3.94033 4.11736 4.18355 4.27169 4.32868 4.49814 4.61981 4.65006 4.65416 4.67463 4.72348 4.74274 4.75974 4.83821 4.84381 4.89025 4.94719 5.11380 5.13490 5.19055 5.38141 5.40656 5.43242 5.49757 5.59545 5.73341 5.94875 6.32121 6.78529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 0.999 3.001 3 C -0.447 4.447 4 C -0.437 4.437 5 C -0.238 4.238 6 O -0.332 6.332 7 C 0.492 3.508 8 O -0.488 6.488 9 C -0.122 4.122 10 C -0.049 4.049 11 C -0.116 4.116 12 C 0.021 3.979 13 C 0.022 3.978 14 C -0.177 4.177 15 C -0.171 4.171 16 C -0.048 4.048 17 C -0.041 4.041 18 O -0.528 6.528 19 Si 0.953 3.047 20 H -0.248 1.248 21 H -0.244 1.244 22 H -0.246 1.246 23 O -0.167 6.167 24 C -0.111 4.111 25 C -0.056 4.056 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.144 0.856 38 H 0.138 0.862 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.137 0.863 42 H 0.381 0.619 43 H 0.139 0.861 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.868 0.106 1.332 2.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.195 2.805 3 C -0.555 4.555 4 C -0.545 4.545 5 C -0.357 4.357 6 O -0.248 6.248 7 C 0.337 3.663 8 O -0.377 6.377 9 C -0.123 4.123 10 C -0.067 4.067 11 C -0.134 4.134 12 C 0.021 3.979 13 C -0.028 4.028 14 C -0.196 4.196 15 C -0.190 4.190 16 C -0.098 4.098 17 C -0.151 4.151 18 O -0.334 6.334 19 Si 0.773 3.227 20 H -0.171 1.171 21 H -0.167 1.167 22 H -0.169 1.169 23 O -0.064 6.064 24 C -0.129 4.129 25 C -0.075 4.075 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.129 0.871 36 H 0.100 0.900 37 H 0.162 0.838 38 H 0.156 0.844 39 H 0.174 0.826 40 H 0.175 0.825 41 H 0.155 0.845 42 H 0.229 0.771 43 H 0.157 0.843 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.199 0.086 0.139 1.210 hybrid contribution 0.029 0.337 0.836 0.902 sum -1.169 0.422 0.975 1.580 Atomic orbital electron populations 1.26062 1.20035 1.04699 1.04587 0.79699 0.67687 0.67088 0.66015 1.26045 1.06506 1.18076 1.04843 1.26243 1.07034 1.07285 1.13901 1.28368 1.05354 0.83756 1.18176 1.86467 1.58981 1.21274 1.58093 1.21097 0.80563 0.86734 0.77916 1.90856 1.28551 1.78024 1.40223 1.19260 1.00636 0.90628 1.01769 1.20984 0.97955 0.92037 0.95694 1.20997 0.96902 0.96053 0.99462 1.18061 0.95617 0.87791 0.96449 1.20370 0.98094 0.88664 0.95683 1.21939 1.00098 0.94749 1.02814 1.21572 1.01158 0.96750 0.99536 1.23053 0.97109 0.87374 1.02271 1.24363 1.10716 0.82702 0.97301 1.86575 1.50020 1.42578 1.54183 0.85580 0.77210 0.81450 0.78470 1.17108 1.16724 1.16889 1.83934 1.52345 1.17374 1.52753 1.20817 1.00616 0.92637 0.98863 1.21160 0.94082 0.95723 0.96493 0.91065 0.90972 0.91066 0.90966 0.90652 0.91046 0.91557 0.91894 0.90416 0.87135 0.90046 0.83785 0.84398 0.82580 0.82520 0.84535 0.77068 0.84300 0.83567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.42 8.65 101.05 0.87 1.30 16 2 Si 1.00 -1.43 12.12 -169.99 -2.06 -3.49 16 3 C -0.45 0.60 8.65 101.05 0.87 1.48 16 4 C -0.44 -0.48 7.10 101.05 0.72 0.24 16 5 C -0.24 0.10 5.40 101.05 0.55 0.65 16 6 O -0.33 -0.42 9.15 -40.68 -0.37 -0.79 16 7 C 0.49 1.14 6.66 34.47 0.23 1.37 16 8 O -0.49 -1.91 12.04 -19.28 -0.23 -2.15 16 9 C -0.12 -0.15 5.88 -104.92 -0.62 -0.77 16 10 C -0.05 -0.05 9.53 -39.57 -0.38 -0.42 16 11 C -0.12 -0.08 9.66 -39.59 -0.38 -0.46 16 12 C 0.02 0.02 5.88 -104.91 -0.62 -0.60 16 13 C 0.02 0.03 7.02 -36.55 -0.26 -0.23 16 14 C -0.18 -0.05 10.26 -39.38 -0.40 -0.45 16 15 C -0.17 -0.07 10.76 -39.83 -0.43 -0.50 16 16 C -0.05 -0.03 6.22 -35.51 -0.22 -0.25 16 17 C -0.04 0.04 2.98 36.01 0.11 0.15 16 18 O -0.53 0.38 12.87 -35.23 -0.45 -0.07 16 19 Si 0.95 -0.73 27.38 -169.99 -4.65 -5.38 16 20 H -0.25 -0.03 7.11 56.52 0.40 0.37 16 21 H -0.24 0.00 7.11 56.52 0.40 0.40 16 22 H -0.25 -0.10 7.11 56.52 0.40 0.30 16 23 O -0.17 -0.29 8.78 4.71 0.04 -0.25 16 24 C -0.11 0.08 9.50 -39.59 -0.38 -0.30 16 25 C -0.06 0.02 9.56 -39.58 -0.38 -0.36 16 26 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 27 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 28 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 29 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 30 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 32 H 0.07 0.15 6.28 -51.93 -0.33 -0.18 16 33 H 0.06 0.03 7.96 -51.93 -0.41 -0.38 16 34 H 0.08 0.17 7.42 -51.93 -0.39 -0.22 16 35 H 0.11 -0.26 7.96 -51.93 -0.41 -0.68 16 36 H 0.08 0.01 7.52 -51.93 -0.39 -0.38 16 37 H 0.14 0.06 7.64 -52.49 -0.40 -0.34 16 38 H 0.14 -0.04 7.90 -52.48 -0.41 -0.46 16 39 H 0.16 -0.32 7.25 -52.49 -0.38 -0.70 16 40 H 0.16 -0.14 8.06 -52.48 -0.42 -0.56 16 41 H 0.14 -0.35 7.96 -51.93 -0.41 -0.77 16 42 H 0.38 -1.43 8.70 45.56 0.40 -1.04 16 43 H 0.14 -0.41 6.97 -52.49 -0.37 -0.77 16 44 H 0.15 -0.29 7.59 -52.49 -0.40 -0.69 16 LS Contribution 374.37 15.07 5.64 5.64 Total: 0.00 -6.31 374.37 -8.40 -14.71 By element: Atomic # 1 Polarization: -3.47 SS G_CDS: -5.61 Total: -9.07 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -0.71 Total: 0.84 kcal Atomic # 8 Polarization: -2.24 SS G_CDS: -1.02 Total: -3.26 kcal Atomic # 14 Polarization: -2.16 SS G_CDS: -6.72 Total: -8.87 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -6.31 -8.40 -14.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_3706302_4858416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.622 kcal (2) G-P(sol) polarization free energy of solvation -6.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds