Wall clock time and date at job start Sat Mar 6 2021 06:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86302 * 109.46815 * 2 1 4 4 C 1.86299 * 109.47221 * 239.99975 * 2 1 3 5 5 C 1.86299 * 109.47440 * 119.99988 * 2 1 3 6 6 O 1.45195 * 109.47340 * 59.99801 * 5 2 1 7 7 C 1.34768 * 116.99799 * 75.00126 * 6 5 2 8 8 O 1.21513 * 119.99815 * 0.02562 * 7 6 5 9 9 C 1.47432 * 120.00021 * 180.02562 * 7 6 5 10 10 C 1.39888 * 120.00448 * 179.97438 * 9 7 6 11 11 C 1.36546 * 119.99438 * 180.02562 * 10 9 7 12 12 C 1.39844 * 120.01066 * 0.02562 * 11 10 9 13 13 C 1.47514 * 120.00130 * 179.97438 * 12 11 10 14 14 C 1.36145 * 125.95025 * 180.02562 * 13 12 11 15 15 C 1.40771 * 106.73305 * 180.02562 * 14 13 12 16 16 C 1.34847 * 107.05707 * 359.97438 * 15 14 13 17 17 C 1.50700 * 125.65455 * 179.97438 * 16 15 14 18 18 O 1.42895 * 109.47426 * 300.00360 * 17 16 15 19 19 Si 1.86301 * 109.47225 * 179.97438 * 17 16 15 20 20 H 1.48503 * 109.47044 * 60.00421 * 19 17 16 21 21 H 1.48504 * 109.47027 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47349 * 300.00010 * 19 17 16 23 23 O 1.34234 * 108.69531 * 0.02562 * 16 15 14 24 24 C 1.39848 * 120.00169 * 0.27046 * 12 11 10 25 25 C 1.36547 * 120.00565 * 359.44385 * 24 12 11 26 26 H 1.09004 * 109.47340 * 299.99850 * 1 2 3 27 27 H 1.08998 * 109.47498 * 60.00505 * 1 2 3 28 28 H 1.09001 * 109.47056 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47049 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47149 * 299.99879 * 3 2 1 31 31 H 1.08996 * 109.47619 * 60.00150 * 3 2 1 32 32 H 1.08992 * 109.47053 * 299.99834 * 4 2 1 33 33 H 1.09001 * 109.47137 * 59.99880 * 4 2 1 34 34 H 1.08999 * 109.47608 * 179.97438 * 4 2 1 35 35 H 1.09005 * 109.46755 * 299.99883 * 5 2 1 36 36 H 1.09000 * 109.47278 * 180.02562 * 5 2 1 37 37 H 1.07998 * 120.00004 * 0.02562 * 10 9 7 38 38 H 1.08008 * 119.99812 * 180.02562 * 11 10 9 39 39 H 1.08001 * 126.62847 * 359.96990 * 14 13 12 40 40 H 1.08005 * 126.47337 * 179.97438 * 15 14 13 41 41 H 1.09002 * 109.46982 * 59.99913 * 17 16 15 42 42 H 0.96702 * 113.99525 * 300.00398 * 18 17 16 43 43 H 1.08001 * 119.99557 * 179.72807 * 24 12 11 44 44 H 1.08000 * 120.00233 * 180.25245 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4841 -0.8782 1.5211 6 8 2.0001 -2.2471 1.5212 7 6 2.5967 -3.1070 0.6721 8 8 3.4970 -2.7233 -0.0482 9 6 2.1571 -4.5132 0.6172 10 6 2.7759 -5.4056 -0.2645 11 6 2.3682 -6.7078 -0.3156 12 6 1.3318 -7.1492 0.5130 13 6 0.8911 -8.5559 0.4573 14 6 -0.1011 -9.1129 1.2049 15 6 -0.1810 -10.4669 0.8281 16 6 0.7552 -10.6693 -0.1211 17 6 1.0318 -11.9768 -0.8174 18 8 1.4097 -12.9601 0.1482 19 14 2.4148 -11.7466 -2.0443 20 1 3.6379 -11.2964 -1.3326 21 1 2.6878 -13.0353 -2.7299 22 1 2.0214 -10.7251 -3.0477 23 8 1.4006 -9.5133 -0.3422 24 6 0.7088 -6.2557 1.3901 25 6 1.1201 -4.9548 1.4457 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.5740 1.7566 -0.0005 30 1 2.1206 2.2703 -0.8900 31 1 2.1206 2.2704 0.8899 32 1 2.1207 -1.9058 -1.5211 33 1 2.1207 -0.3644 -2.4111 34 1 3.5740 -0.8779 -1.5214 35 1 2.1207 -0.3643 2.4111 36 1 3.5741 -0.8778 1.5213 37 1 3.5760 -5.0647 -0.9047 38 1 2.8462 -7.3971 -0.9960 39 1 -0.7087 -8.6128 1.9446 40 1 -0.8634 -11.2044 1.2244 41 1 0.1341 -12.3072 -1.3400 42 1 2.2028 -12.7318 0.6523 43 1 -0.0945 -6.5957 2.0268 44 1 0.6418 -4.2658 2.1260 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_3706302_4858416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:23:06 Heat of formation + Delta-G solvation = -97.380841 kcal Electronic energy + Delta-G solvation = -25607.139614 eV Core-core repulsion = 21808.739814 eV Total energy + Delta-G solvation = -3798.399800 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.124 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.75581 -41.68561 -39.94503 -37.98383 -37.42720 -34.41448 -33.55449 -32.34415 -30.78095 -29.65417 -28.44921 -28.36161 -28.24105 -26.74278 -24.60815 -24.04092 -22.54374 -22.05928 -21.30163 -19.36637 -18.89399 -18.22115 -17.75082 -17.53955 -17.43659 -16.85621 -16.01679 -15.77652 -15.75476 -15.15961 -14.81627 -14.72772 -14.65000 -14.25492 -14.17127 -13.96111 -13.95094 -13.89640 -13.81695 -13.74851 -13.39344 -13.24938 -13.14890 -13.05719 -12.97206 -12.80118 -12.55762 -12.27514 -12.16706 -12.06722 -11.63929 -11.17548 -10.85654 -10.77955 -10.77317 -10.53755 -10.38045 -10.27027 -9.03055 -0.87462 0.25854 0.57910 1.02625 1.29438 1.37058 1.42322 1.49413 1.56698 1.72420 1.74966 1.87523 1.89148 2.07111 2.56292 2.69679 3.23986 3.39854 3.58001 3.72906 3.79088 3.91572 3.98845 4.13119 4.24824 4.30190 4.44725 4.52761 4.66604 4.70213 4.74079 4.77192 4.77461 4.80646 4.81804 4.82973 4.87324 4.87784 4.89996 5.10943 5.12567 5.20953 5.32376 5.44624 5.52519 5.60502 5.61032 5.63077 5.95573 6.53799 6.66625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.060 2.940 3 C -0.452 4.452 4 C -0.457 4.457 5 C -0.256 4.256 6 O -0.331 6.331 7 C 0.490 3.510 8 O -0.513 6.513 9 C -0.138 4.138 10 C -0.057 4.057 11 C -0.125 4.125 12 C 0.015 3.985 13 C 0.001 3.999 14 C -0.173 4.173 15 C -0.179 4.179 16 C -0.055 4.055 17 C -0.032 4.032 18 O -0.537 6.537 19 Si 0.982 3.018 20 H -0.264 1.264 21 H -0.253 1.253 22 H -0.266 1.266 23 O -0.183 6.183 24 C -0.106 4.106 25 C -0.051 4.051 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.135 0.865 36 H 0.074 0.926 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.180 0.820 40 H 0.170 0.830 41 H 0.154 0.846 42 H 0.393 0.607 43 H 0.166 0.834 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.394 0.268 2.767 4.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.251 2.749 3 C -0.560 4.560 4 C -0.562 4.562 5 C -0.373 4.373 6 O -0.247 6.247 7 C 0.336 3.664 8 O -0.404 6.404 9 C -0.140 4.140 10 C -0.075 4.075 11 C -0.143 4.143 12 C 0.014 3.986 13 C -0.048 4.048 14 C -0.192 4.192 15 C -0.198 4.198 16 C -0.105 4.105 17 C -0.143 4.143 18 O -0.345 6.345 19 Si 0.806 3.194 20 H -0.188 1.188 21 H -0.176 1.176 22 H -0.190 1.190 23 O -0.081 6.081 24 C -0.124 4.124 25 C -0.069 4.069 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.153 0.847 36 H 0.092 0.908 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.197 0.803 40 H 0.188 0.812 41 H 0.171 0.829 42 H 0.243 0.757 43 H 0.184 0.816 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.710 0.225 1.568 3.140 hybrid contribution 0.530 0.256 0.369 0.695 sum -2.180 0.481 1.938 2.956 Atomic orbital electron populations 1.26131 1.20194 1.04546 1.05195 0.78793 0.66795 0.66021 0.63247 1.26088 1.06417 1.18041 1.05476 1.26560 1.06094 1.07034 1.16529 1.28702 1.05205 0.83181 1.20231 1.86453 1.58782 1.21904 1.57563 1.21334 0.80212 0.87247 0.77580 1.90843 1.29757 1.78526 1.41254 1.19365 1.01681 0.90205 1.02705 1.20991 0.98169 0.92319 0.95992 1.21054 0.97398 0.95942 0.99941 1.18242 0.95620 0.88044 0.96666 1.20594 0.98948 0.88862 0.96394 1.22271 0.99572 0.94719 1.02602 1.21828 1.01308 0.97213 0.99486 1.23407 0.97123 0.87493 1.02512 1.24357 1.10962 0.82144 0.96834 1.86548 1.50871 1.42719 1.54329 0.85154 0.76698 0.79932 0.77638 1.18781 1.17646 1.18991 1.83925 1.52929 1.17931 1.53275 1.21099 1.00749 0.92082 0.98450 1.21380 0.93261 0.96233 0.96037 0.89987 0.90841 0.91611 0.91228 0.90540 0.89893 0.93141 0.91720 0.92026 0.84697 0.90755 0.84270 0.84290 0.80284 0.81244 0.82880 0.75713 0.81628 0.81689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.17 8.65 113.37 0.98 2.15 16 2 Si 1.06 -2.96 12.12 68.60 0.83 -2.13 16 3 C -0.45 1.50 8.65 113.37 0.98 2.48 16 4 C -0.46 -1.86 7.10 113.37 0.80 -1.06 16 5 C -0.26 0.25 5.40 113.37 0.61 0.86 16 6 O -0.33 -0.90 9.15 -56.79 -0.52 -1.42 16 7 C 0.49 2.94 6.66 70.24 0.47 3.41 16 8 O -0.51 -5.19 12.04 19.79 0.24 -4.95 16 9 C -0.14 -0.51 5.88 -20.06 -0.12 -0.62 16 10 C -0.06 -0.22 9.53 22.27 0.21 -0.01 16 11 C -0.13 -0.37 9.66 22.26 0.21 -0.15 16 12 C 0.01 0.03 5.88 -20.05 -0.12 -0.09 16 13 C 0.00 0.00 7.02 24.23 0.17 0.17 16 14 C -0.17 0.09 10.26 22.40 0.23 0.32 16 15 C -0.18 0.00 10.76 22.11 0.24 0.24 16 16 C -0.06 -0.06 6.22 24.91 0.15 0.09 16 17 C -0.03 0.08 2.98 71.24 0.21 0.29 16 18 O -0.54 1.07 12.87 -148.98 -1.92 -0.84 16 19 Si 0.98 -0.65 27.38 68.60 1.88 1.22 16 20 H -0.26 -0.43 7.11 99.48 0.71 0.28 16 21 H -0.25 -0.15 7.11 99.48 0.71 0.56 16 22 H -0.27 -0.64 7.11 99.48 0.71 0.07 16 23 O -0.18 -0.77 8.78 -6.07 -0.05 -0.82 16 24 C -0.11 0.23 9.50 22.26 0.21 0.44 16 25 C -0.05 0.05 9.56 22.27 0.21 0.27 16 26 H 0.08 -0.37 7.96 -2.38 -0.02 -0.39 16 27 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 28 H 0.06 -0.07 7.96 -2.39 -0.02 -0.09 16 29 H 0.07 -0.17 7.96 -2.38 -0.02 -0.19 16 30 H 0.08 -0.24 7.96 -2.39 -0.02 -0.26 16 31 H 0.08 -0.44 7.96 -2.39 -0.02 -0.46 16 32 H 0.05 0.36 6.28 -2.39 -0.02 0.34 16 33 H 0.06 0.18 7.96 -2.39 -0.02 0.16 16 34 H 0.06 0.43 7.42 -2.39 -0.02 0.41 16 35 H 0.14 -0.83 7.96 -2.38 -0.02 -0.85 16 36 H 0.07 0.06 7.52 -2.39 -0.02 0.04 16 37 H 0.14 0.54 7.64 -2.91 -0.02 0.52 16 38 H 0.14 0.23 7.90 -2.91 -0.02 0.21 16 39 H 0.18 -1.11 7.25 -2.91 -0.02 -1.13 16 40 H 0.17 -0.53 8.06 -2.91 -0.02 -0.55 16 41 H 0.15 -0.92 7.96 -2.39 -0.02 -0.94 16 42 H 0.39 -3.05 8.70 -74.06 -0.64 -3.69 16 43 H 0.17 -1.33 6.97 -2.91 -0.02 -1.35 16 44 H 0.17 -0.86 7.59 -2.91 -0.02 -0.89 16 Total: 0.00 -15.61 374.37 7.05 -8.56 By element: Atomic # 1 Polarization: -9.53 SS G_CDS: 1.12 Total: -8.41 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 5.47 Total: 8.79 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -2.25 Total: -8.03 kcal Atomic # 14 Polarization: -3.61 SS G_CDS: 2.71 Total: -0.90 kcal Total: -15.61 7.05 -8.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_3706302_4858416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.825 kcal (2) G-P(sol) polarization free energy of solvation -15.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds