Wall clock time and date at job start Sat Mar 6 2021 07:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86304 * 109.47025 * 2 1 4 4 C 1.86305 * 109.47198 * 240.00259 * 2 1 3 5 5 C 1.86793 * 109.47205 * 119.99973 * 2 1 3 6 6 C 1.38240 * 119.99795 * 90.00086 * 5 2 1 7 7 C 1.38239 * 119.99715 * 180.02562 * 6 5 2 8 8 C 1.38237 * 120.00330 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00080 * 179.97438 * 8 7 6 10 10 O 1.45195 * 109.46826 * 90.00241 * 9 8 7 11 11 C 1.34768 * 116.99799 * 179.97438 * 10 9 8 12 12 O 1.21513 * 119.99815 * 0.02562 * 11 10 9 13 13 C 1.47432 * 120.00021 * 180.02562 * 11 10 9 14 14 C 1.39888 * 120.00448 * 179.97438 * 13 11 10 15 15 C 1.36546 * 119.99438 * 180.02562 * 14 13 11 16 16 C 1.39844 * 120.01066 * 0.02562 * 15 14 13 17 17 C 1.47514 * 120.00130 * 179.97438 * 16 15 14 18 18 C 1.36145 * 125.95025 * 180.02562 * 17 16 15 19 19 C 1.40771 * 106.73305 * 180.02562 * 18 17 16 20 20 C 1.34847 * 107.05707 * 359.97438 * 19 18 17 21 21 C 1.50700 * 125.65455 * 179.97438 * 20 19 18 22 22 O 1.42895 * 109.47426 * 300.00360 * 21 20 19 23 23 Si 1.86301 * 109.47225 * 179.97438 * 21 20 19 24 24 H 1.48504 * 109.47027 * 179.97438 * 23 21 20 25 25 H 1.48499 * 109.47349 * 300.00010 * 23 21 20 26 26 H 1.48503 * 109.47044 * 60.00421 * 23 21 20 27 27 O 1.34234 * 108.69531 * 0.02562 * 20 19 18 28 28 C 1.39848 * 120.00169 * 0.27046 * 16 15 14 29 29 C 1.36547 * 120.00565 * 359.44385 * 28 16 15 30 30 C 1.38239 * 119.99763 * 0.26004 * 8 7 6 31 31 C 1.38237 * 120.00208 * 270.02577 * 5 2 1 32 32 H 1.09002 * 109.47655 * 299.99815 * 1 2 3 33 33 H 1.09001 * 109.47493 * 60.00288 * 1 2 3 34 34 H 1.09005 * 109.47025 * 179.97438 * 1 2 3 35 35 H 1.08998 * 109.47190 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47203 * 300.00449 * 3 2 1 37 37 H 1.09002 * 109.46753 * 59.99632 * 3 2 1 38 38 H 1.08997 * 109.46940 * 300.00002 * 4 2 1 39 39 H 1.09000 * 109.47146 * 60.00119 * 4 2 1 40 40 H 1.08998 * 109.46807 * 180.02562 * 4 2 1 41 41 H 1.07993 * 120.00038 * 359.97438 * 6 5 2 42 42 H 1.07999 * 119.99943 * 179.97438 * 7 6 5 43 43 H 1.08998 * 109.47056 * 329.99863 * 9 8 7 44 44 H 1.09000 * 109.46953 * 210.00278 * 9 8 7 45 45 H 1.07998 * 120.00004 * 0.02562 * 14 13 11 46 46 H 1.08008 * 119.99812 * 180.02562 * 15 14 13 47 47 H 1.08001 * 126.62847 * 359.96990 * 18 17 16 48 48 H 1.08005 * 126.47337 * 179.97438 * 19 18 17 49 49 H 1.09002 * 109.46982 * 59.99913 * 21 20 19 50 50 H 0.96697 * 114.00564 * 179.97438 * 22 21 20 51 51 H 1.08001 * 119.99557 * 179.72807 * 28 16 15 52 52 H 1.08000 * 120.00233 * 180.25245 * 29 28 16 53 53 H 1.07992 * 119.99737 * 179.71810 * 30 8 7 54 54 H 1.07998 * 119.99834 * 359.97438 * 31 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8805 1.5252 6 6 2.7160 -2.2432 1.4909 7 6 3.1763 -2.8949 2.6198 8 6 3.4068 -2.1840 3.7827 9 6 3.9080 -2.8946 5.0135 10 8 5.3600 -2.8956 5.0141 11 6 5.9709 -3.4959 6.0546 12 8 5.3083 -4.0049 6.9369 13 6 7.4431 -3.5349 6.1224 14 6 8.0774 -4.1575 7.2027 15 6 9.4409 -4.1931 7.2656 16 6 10.2035 -3.6069 6.2504 17 6 11.6765 -3.6450 6.3188 18 6 12.5332 -3.1152 5.4028 19 6 13.8360 -3.3815 5.8648 20 6 13.7137 -4.0529 7.0279 21 6 14.8535 -4.5459 7.8816 22 8 15.6544 -5.4574 7.1268 23 14 14.1742 -5.4125 9.3844 24 1 15.2975 -5.8988 10.2253 25 1 13.3424 -4.4647 10.1686 26 1 13.3414 -6.5653 8.9568 27 8 12.4084 -4.2103 7.2987 28 6 9.5696 -2.9790 5.1735 29 6 8.2060 -2.9483 5.1073 30 6 3.1717 -0.8222 3.8184 31 6 2.7155 -0.1697 2.6883 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 3.5739 1.7565 0.0005 36 1 2.1205 2.2704 -0.8899 37 1 2.1205 2.2703 0.8900 38 1 2.1207 -1.9058 -1.5212 39 1 2.1207 -0.3643 -2.4112 40 1 3.5740 -0.8785 -1.5209 41 1 2.5357 -2.7986 0.5825 42 1 3.3560 -3.9595 2.5931 43 1 3.5439 -3.9220 5.0134 44 1 3.5446 -2.3804 5.9032 45 1 7.4886 -4.6099 7.9869 46 1 9.9307 -4.6741 8.0994 47 1 12.2650 -2.5927 4.4965 48 1 14.7592 -3.1010 5.3795 49 1 15.4646 -3.6997 8.1957 50 1 16.4087 -5.8154 7.6147 51 1 10.1586 -2.5225 4.3918 52 1 7.7166 -2.4670 4.2736 53 1 3.3474 -0.2676 4.7282 54 1 2.5355 0.8948 2.7150 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_3706302_9435856.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:47:19 Heat of formation + Delta-G solvation = -81.408114 kcal Electronic energy + Delta-G solvation = -33822.771136 eV Core-core repulsion = 29201.084166 eV Total energy + Delta-G solvation = -4621.686970 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 410.155 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.76913 -41.82988 -40.27962 -39.75220 -37.91038 -37.63405 -34.45429 -33.73131 -32.99753 -32.34562 -31.89764 -30.80311 -29.43411 -28.27643 -28.25979 -27.88102 -26.75147 -24.73382 -24.05789 -23.49852 -22.72449 -22.14147 -22.03477 -21.30506 -19.37108 -18.83631 -18.67313 -18.29800 -17.63962 -17.30747 -17.21564 -16.63796 -16.20435 -16.06023 -16.01062 -15.99718 -15.50050 -14.90275 -14.76371 -14.68783 -14.46828 -14.35016 -14.30146 -14.25950 -14.10188 -14.03424 -13.96487 -13.81714 -13.80816 -13.69388 -13.39567 -13.14588 -13.12137 -13.09550 -12.95010 -12.74011 -12.70300 -12.24707 -12.20205 -12.11602 -12.05821 -11.84326 -11.75852 -11.20778 -10.91539 -10.78565 -10.77606 -10.74200 -10.42757 -10.30774 -9.81894 -9.71252 -9.04877 -0.93341 0.08310 0.22293 0.50902 0.52729 1.00925 1.21286 1.30630 1.46004 1.53121 1.64750 1.69836 1.84348 1.90335 2.03998 2.13449 2.64414 2.67550 2.92549 3.18422 3.43637 3.55613 3.68910 3.71970 3.74015 3.75090 3.82183 3.97499 4.08428 4.09131 4.20040 4.21342 4.28189 4.36715 4.49030 4.52705 4.64945 4.69658 4.75892 4.84833 4.85828 4.86026 4.87274 4.90346 4.91262 4.91607 4.92163 4.97094 5.04599 5.08065 5.14958 5.17173 5.22418 5.39411 5.43490 5.55524 5.56647 5.58108 5.60798 5.69288 5.72571 5.95354 6.10250 6.49628 6.73580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.127 2.873 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.371 4.371 6 C -0.101 4.101 7 C -0.119 4.119 8 C -0.105 4.105 9 C 0.109 3.891 10 O -0.345 6.345 11 C 0.511 3.489 12 O -0.535 6.535 13 C -0.140 4.140 14 C -0.052 4.052 15 C -0.126 4.126 16 C 0.019 3.981 17 C -0.002 4.002 18 C -0.170 4.170 19 C -0.179 4.179 20 C -0.019 4.019 21 C -0.037 4.037 22 O -0.558 6.558 23 Si 0.974 3.026 24 H -0.228 1.228 25 H -0.266 1.266 26 H -0.284 1.284 27 O -0.185 6.185 28 C -0.105 4.105 29 C -0.046 4.046 30 C -0.119 4.119 31 C -0.101 4.101 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.141 0.859 42 H 0.127 0.873 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.141 0.859 46 H 0.140 0.860 47 H 0.183 0.817 48 H 0.172 0.828 49 H 0.129 0.871 50 H 0.409 0.591 51 H 0.168 0.832 52 H 0.162 0.838 53 H 0.128 0.872 54 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.587 3.636 -3.523 6.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.314 2.686 3 C -0.569 4.569 4 C -0.569 4.569 5 C -0.410 4.410 6 C -0.119 4.119 7 C -0.137 4.137 8 C -0.105 4.105 9 C 0.036 3.964 10 O -0.261 6.261 11 C 0.358 3.642 12 O -0.426 6.426 13 C -0.141 4.141 14 C -0.070 4.070 15 C -0.143 4.143 16 C 0.019 3.981 17 C -0.051 4.051 18 C -0.189 4.189 19 C -0.198 4.198 20 C -0.069 4.069 21 C -0.147 4.147 22 O -0.369 6.369 23 Si 0.797 3.203 24 H -0.150 1.150 25 H -0.190 1.190 26 H -0.209 1.209 27 O -0.083 6.083 28 C -0.123 4.123 29 C -0.064 4.064 30 C -0.137 4.137 31 C -0.119 4.119 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.159 0.841 42 H 0.145 0.855 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.159 0.841 46 H 0.158 0.842 47 H 0.200 0.800 48 H 0.190 0.810 49 H 0.146 0.854 50 H 0.262 0.738 51 H 0.185 0.815 52 H 0.179 0.821 53 H 0.146 0.854 54 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.507 3.018 -2.664 4.742 hybrid contribution 0.278 -0.367 0.574 0.736 sum 2.785 2.650 -2.090 4.376 Atomic orbital electron populations 1.26302 1.21690 1.04449 1.04576 0.77182 0.65113 0.64720 0.61607 1.26270 1.06485 1.19258 1.04893 1.26273 1.06483 1.08468 1.15706 1.28091 1.02085 0.99593 1.11208 1.21396 0.97208 0.95198 0.98113 1.21369 0.99071 1.00439 0.92815 1.19535 1.01940 0.94636 0.94404 1.21950 0.75745 1.01513 0.97205 1.86610 1.23839 1.70803 1.44868 1.21368 0.89527 0.74312 0.78968 1.90849 1.67402 1.44775 1.39589 1.19291 0.88544 1.06851 0.99460 1.20983 0.94455 0.95121 0.96467 1.21054 0.93254 1.00610 0.99427 1.18247 0.86966 0.97191 0.95678 1.20582 0.91186 1.03406 0.89947 1.22293 0.91640 1.03410 1.01540 1.21826 0.99538 1.02548 0.95867 1.22052 0.81839 1.03525 0.99488 1.23794 0.91462 0.98897 1.00544 1.86413 1.44803 1.62425 1.43237 0.85313 0.80500 0.79097 0.75402 1.15041 1.18998 1.20946 1.83896 1.17577 1.62701 1.44130 1.21082 0.94351 0.99145 0.97726 1.21314 0.93444 0.94538 0.97062 1.21369 0.99058 0.93521 0.99713 1.21397 0.97208 1.00831 0.92460 0.91420 0.90659 0.91440 0.91188 0.90643 0.90904 0.90929 0.90644 0.91197 0.84088 0.85489 0.90091 0.90048 0.84124 0.84210 0.79997 0.81033 0.85408 0.73826 0.81503 0.82086 0.85440 0.84052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.82 8.65 113.37 0.98 2.80 16 2 Si 1.13 -7.09 12.32 68.60 0.85 -6.24 16 3 C -0.46 2.31 8.53 113.37 0.97 3.28 16 4 C -0.46 2.28 8.53 113.37 0.97 3.25 16 5 C -0.37 0.43 4.59 22.27 0.10 0.53 16 6 C -0.10 -0.02 9.29 22.27 0.21 0.19 16 7 C -0.12 -0.31 9.70 22.27 0.22 -0.09 16 8 C -0.11 -0.41 5.52 -19.86 -0.11 -0.52 16 9 C 0.11 0.52 5.60 71.24 0.40 0.92 16 10 O -0.34 -2.22 9.44 -56.79 -0.54 -2.75 16 11 C 0.51 4.43 7.89 70.24 0.55 4.98 16 12 O -0.53 -7.49 16.12 19.79 0.32 -7.17 16 13 C -0.14 -0.75 5.88 -20.06 -0.12 -0.87 16 14 C -0.05 -0.27 9.53 22.27 0.21 -0.06 16 15 C -0.13 -0.55 9.66 22.26 0.21 -0.34 16 16 C 0.02 0.07 5.88 -20.05 -0.12 -0.05 16 17 C 0.00 -0.01 7.02 24.23 0.17 0.16 16 18 C -0.17 -0.23 10.26 22.40 0.23 0.00 16 19 C -0.18 -0.39 10.76 22.11 0.24 -0.15 16 20 C -0.02 -0.08 6.26 24.91 0.16 0.08 16 21 C -0.04 0.08 2.97 71.24 0.21 0.29 16 22 O -0.56 1.14 12.85 -148.98 -1.91 -0.78 16 23 Si 0.97 -0.33 27.38 68.60 1.88 1.55 16 24 H -0.23 0.78 7.11 99.48 0.71 1.49 16 25 H -0.27 -0.74 7.11 99.48 0.71 -0.03 16 26 H -0.28 -1.71 7.11 99.48 0.71 -1.00 16 27 O -0.18 -1.31 8.78 -6.07 -0.05 -1.36 16 28 C -0.11 0.07 9.50 22.26 0.21 0.28 16 29 C -0.05 -0.03 9.56 22.27 0.21 0.18 16 30 C -0.12 -0.30 9.70 22.27 0.22 -0.08 16 31 C -0.10 -0.01 9.29 22.27 0.21 0.20 16 32 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 33 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 34 H 0.07 -0.21 7.96 -2.38 -0.02 -0.23 16 35 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 36 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 37 H 0.07 -0.39 7.69 -2.39 -0.02 -0.41 16 38 H 0.07 -0.38 7.69 -2.39 -0.02 -0.40 16 39 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 40 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 41 H 0.14 -0.58 7.43 -2.91 -0.02 -0.61 16 42 H 0.13 0.05 8.06 -2.91 -0.02 0.03 16 43 H 0.08 0.36 8.08 -2.39 -0.02 0.34 16 44 H 0.08 0.35 8.08 -2.39 -0.02 0.33 16 45 H 0.14 0.71 7.64 -2.91 -0.02 0.68 16 46 H 0.14 0.45 7.90 -2.91 -0.02 0.42 16 47 H 0.18 -0.90 7.25 -2.91 -0.02 -0.92 16 48 H 0.17 -0.30 8.06 -2.91 -0.02 -0.32 16 49 H 0.13 -1.07 7.96 -2.39 -0.02 -1.09 16 50 H 0.41 -4.97 8.74 -74.06 -0.65 -5.62 16 51 H 0.17 -1.12 6.97 -2.91 -0.02 -1.14 16 52 H 0.16 -0.42 7.59 -2.91 -0.02 -0.45 16 53 H 0.13 0.02 8.06 -2.91 -0.02 0.00 16 54 H 0.14 -0.61 7.43 -2.91 -0.02 -0.63 16 Total: 0.00 -21.26 463.14 7.89 -13.37 By element: Atomic # 1 Polarization: -12.63 SS G_CDS: 1.02 Total: -11.60 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 6.33 Total: 14.99 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -2.18 Total: -12.06 kcal Atomic # 14 Polarization: -7.42 SS G_CDS: 2.72 Total: -4.69 kcal Total: -21.26 7.89 -13.37 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_3706302_9435856.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.040 kcal (2) G-P(sol) polarization free energy of solvation -21.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds