Wall clock time and date at job start Sat Mar 6 2021 07:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86298 * 109.46956 * 2 1 4 4 C 1.50697 * 109.47531 * 239.99609 * 2 1 3 5 5 C 1.38242 * 119.96942 * 120.01915 * 4 2 1 6 6 C 1.38291 * 120.11313 * 180.02562 * 5 4 2 7 7 C 1.38133 * 120.05237 * 359.68342 * 6 5 4 8 8 C 1.38754 * 119.93975 * 0.59534 * 7 6 5 9 9 O 1.35895 * 120.05175 * 179.69914 * 8 7 6 10 10 C 1.42899 * 117.00478 * 359.72583 * 9 8 7 11 11 C 1.50700 * 109.47692 * 179.97438 * 10 9 8 12 12 C 1.38345 * 119.92368 * 270.02640 * 11 10 9 13 13 C 1.38392 * 120.29887 * 179.97438 * 12 11 10 14 14 C 1.37924 * 120.15351 * 359.77730 * 13 12 11 15 15 C 1.39648 * 119.84451 * 0.45125 * 14 13 12 16 16 C 1.47727 * 120.14705 * 179.80467 * 15 14 13 17 17 O 1.21471 * 120.00020 * 179.72253 * 16 15 14 18 18 O 1.34706 * 120.00020 * 359.72669 * 16 15 14 19 19 C 1.45201 * 117.00080 * 179.97438 * 18 16 15 20 20 C 1.52996 * 109.47238 * 179.97438 * 19 18 16 21 21 H 1.08997 * 112.85137 * 316.19652 * 20 19 18 22 22 C 1.53790 * 113.61177 * 87.50440 * 20 19 18 23 23 C 1.53776 * 87.07856 * 139.98064 * 22 20 19 24 24 H 1.09002 * 113.69340 * 89.12692 * 23 22 20 25 25 O 1.42903 * 113.61415 * 220.01390 * 23 22 20 26 26 C 1.53774 * 87.08537 * 334.56697 * 23 22 20 27 27 C 1.37966 * 119.92379 * 89.99698 * 11 10 9 28 28 C 1.38161 * 119.97443 * 300.00679 * 4 2 1 29 29 H 0.96702 * 113.99849 * 60.00488 * 1 2 3 30 30 H 1.08997 * 109.46730 * 119.99636 * 2 1 3 31 31 H 1.48500 * 110.00255 * 59.99950 * 3 2 1 32 32 H 1.48504 * 110.00018 * 181.31393 * 3 2 1 33 33 H 1.08001 * 119.95074 * 359.97438 * 5 4 2 34 34 H 1.07995 * 119.97785 * 179.97438 * 6 5 4 35 35 H 1.08001 * 120.02728 * 180.32041 * 7 6 5 36 36 H 1.09008 * 109.47277 * 59.99761 * 10 9 8 37 37 H 1.09001 * 109.47082 * 300.00291 * 10 9 8 38 38 H 1.08000 * 119.84941 * 359.97438 * 12 11 10 39 39 H 1.08001 * 119.91895 * 180.02562 * 13 12 11 40 40 H 1.07997 * 120.07644 * 180.25407 * 14 13 12 41 41 H 1.08997 * 109.46974 * 59.99870 * 19 18 16 42 42 H 1.09002 * 109.46750 * 300.00037 * 19 18 16 43 43 H 1.08994 * 113.61345 * 25.43132 * 22 20 19 44 44 H 1.08999 * 113.60844 * 254.52700 * 22 20 19 45 45 H 0.96700 * 114.00311 * 277.50236 * 25 23 22 46 46 H 1.08995 * 113.62199 * 139.98636 * 26 23 22 47 47 H 1.09002 * 113.61399 * 270.88538 * 26 23 22 48 48 H 1.07996 * 120.07779 * 0.02839 * 27 11 10 49 49 H 1.07999 * 120.03034 * 0.03859 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7265 -0.0382 -2.1397 6 6 3.1887 -0.6871 -3.2700 7 6 2.8622 -2.0112 -3.4898 8 6 2.0595 -2.6864 -2.5814 9 8 1.7319 -3.9873 -2.7985 10 6 2.2437 -4.5960 -3.9857 11 6 1.7804 -6.0282 -4.0559 12 6 2.5469 -7.0302 -3.4881 13 6 2.1286 -8.3480 -3.5476 14 6 0.9409 -8.6704 -4.1703 15 6 0.1646 -7.6645 -4.7498 16 6 -1.1065 -8.0029 -5.4222 17 8 -1.7821 -7.1252 -5.9210 18 8 -1.5164 -9.2846 -5.4822 19 6 -2.7754 -9.5432 -6.1578 20 6 -3.0726 -11.0437 -6.1258 21 1 -2.1987 -11.6533 -6.3554 22 6 -3.8270 -11.4954 -4.8641 23 6 -4.6463 -12.4195 -5.7803 24 1 -4.2042 -13.4067 -5.9152 25 8 -6.0343 -12.4743 -5.4446 26 6 -4.3269 -11.4404 -6.9222 27 6 0.5924 -6.3372 -4.6859 28 6 1.5972 -2.0332 -1.4485 29 1 -0.3933 0.4416 -0.7651 30 1 1.7922 -0.5138 0.8900 31 1 1.5614 2.4679 1.2085 32 1 3.5345 1.7703 -0.0320 33 1 2.9865 0.9959 -1.9676 34 1 3.8094 -0.1597 -3.9792 35 1 3.2277 -2.5190 -4.3700 36 1 3.3333 -4.5674 -3.9679 37 1 1.8803 -4.0529 -4.8581 38 1 3.4760 -6.7828 -2.9961 39 1 2.7316 -9.1253 -3.1019 40 1 0.6136 -9.6987 -4.2124 41 1 -2.7076 -9.2086 -7.1929 42 1 -3.5762 -9.0029 -5.6530 43 1 -4.4170 -10.7043 -4.4015 44 1 -3.2017 -12.0313 -4.1500 45 1 -6.2414 -13.0885 -4.7270 46 1 -4.1053 -11.9316 -7.8696 47 1 -5.0537 -10.6342 -7.0223 48 1 -0.0050 -5.5541 -5.1287 49 1 0.9757 -2.5579 -0.7380 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_4065984_11354868.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:32:16 Heat of formation + Delta-G solvation = -119.116095 kcal Electronic energy + Delta-G solvation = -31443.710593 eV Core-core repulsion = 26882.827674 eV Total energy + Delta-G solvation = -4560.882919 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.154 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.73346 -41.31074 -40.49634 -39.92715 -38.93686 -37.45154 -37.22984 -36.00991 -33.70373 -32.46373 -32.43611 -31.07564 -29.68259 -27.81607 -26.84553 -26.62126 -25.59567 -23.66168 -23.42176 -23.20920 -22.24482 -21.60331 -20.63224 -19.21667 -18.88374 -18.64905 -18.06969 -17.79384 -17.43549 -17.22468 -17.19801 -16.99866 -16.88060 -16.46929 -16.14407 -15.88080 -15.57016 -15.39549 -15.14405 -15.08089 -14.90351 -14.53364 -14.21808 -14.14850 -14.08805 -13.70741 -13.54524 -13.49468 -13.48200 -12.94732 -12.85763 -12.84169 -12.60778 -12.46002 -12.24327 -12.17704 -12.03551 -11.92399 -11.71501 -11.63873 -11.49866 -11.27320 -10.82369 -10.50010 -10.19589 -10.12944 -9.90691 -9.24240 -5.02656 -0.43936 0.05787 0.21334 0.41420 1.28148 1.44094 1.51940 1.63825 1.95910 2.17364 2.68172 2.75447 3.10660 3.33439 3.39728 3.43611 3.49895 3.53444 3.61550 3.65319 3.76587 3.80636 3.82501 3.92057 3.95309 3.99474 4.09330 4.12370 4.15686 4.18120 4.20104 4.31120 4.40342 4.42247 4.54526 4.54632 4.62691 4.63321 4.68431 4.68853 4.75686 4.87389 4.97599 5.01606 5.10913 5.13861 5.23668 5.26382 5.27219 5.37044 5.41491 5.44376 5.62652 5.68013 6.36736 6.57909 6.64184 6.72483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.070 4.070 3 Si 0.693 3.307 4 C -0.081 4.081 5 C -0.156 4.156 6 C -0.073 4.073 7 C -0.205 4.205 8 C 0.131 3.869 9 O -0.308 6.308 10 C 0.102 3.898 11 C -0.109 4.109 12 C -0.057 4.057 13 C -0.134 4.134 14 C -0.050 4.050 15 C -0.129 4.129 16 C 0.510 3.490 17 O -0.503 6.503 18 O -0.351 6.351 19 C 0.080 3.920 20 C -0.111 4.111 21 H 0.107 0.893 22 C -0.165 4.165 23 C 0.076 3.924 24 H 0.085 0.915 25 O -0.560 6.560 26 C -0.120 4.120 27 C -0.029 4.029 28 C -0.125 4.125 29 H 0.380 0.620 30 H 0.115 0.885 31 H -0.255 1.255 32 H -0.258 1.258 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.381 0.619 46 H 0.081 0.919 47 H 0.095 0.905 48 H 0.141 0.859 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.540 -2.045 -1.978 4.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.181 4.181 3 Si 0.595 3.405 4 C -0.081 4.081 5 C -0.174 4.174 6 C -0.091 4.091 7 C -0.224 4.224 8 C 0.086 3.914 9 O -0.222 6.222 10 C 0.028 3.972 11 C -0.109 4.109 12 C -0.075 4.075 13 C -0.152 4.152 14 C -0.068 4.068 15 C -0.130 4.130 16 C 0.355 3.645 17 O -0.391 6.391 18 O -0.267 6.267 19 C 0.007 3.993 20 C -0.129 4.129 21 H 0.125 0.875 22 C -0.202 4.202 23 C 0.017 3.983 24 H 0.103 0.897 25 O -0.365 6.365 26 C -0.158 4.158 27 C -0.047 4.047 28 C -0.143 4.143 29 H 0.227 0.773 30 H 0.133 0.867 31 H -0.180 1.180 32 H -0.183 1.183 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.160 0.840 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.110 0.890 44 H 0.093 0.907 45 H 0.228 0.772 46 H 0.100 0.900 47 H 0.113 0.887 48 H 0.159 0.841 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.716 -1.219 -1.531 4.200 hybrid contribution 0.254 -1.031 0.287 1.100 sum 3.970 -2.250 -1.245 4.730 Atomic orbital electron populations 1.86514 1.16908 1.81728 1.49239 1.25116 0.85404 1.10242 0.97322 0.94597 0.80916 0.77853 0.87103 1.20146 0.97469 0.93892 0.96601 1.20932 1.01005 0.99850 0.95570 1.20920 0.97800 0.93698 0.96645 1.21327 1.03424 0.96554 1.01096 1.19013 0.94531 0.83368 0.94516 1.86166 1.70928 1.22479 1.42593 1.21581 0.98788 0.89720 0.87139 1.19356 0.96000 0.93989 1.01563 1.21414 0.99096 0.92513 0.94525 1.21216 0.96802 0.96655 1.00495 1.21588 0.92995 0.99557 0.92661 1.19068 0.94357 0.94624 1.04943 1.21093 0.85483 0.80823 0.77131 1.90866 1.55544 1.48736 1.43987 1.86506 1.40369 1.28399 1.71472 1.23118 0.82815 0.95990 0.97403 1.22376 0.98120 0.94153 0.98294 0.87472 1.23800 0.98841 1.00667 0.96926 1.23284 0.81671 0.97382 0.95932 0.89680 1.86531 1.24239 1.67594 1.58181 1.23073 0.95903 0.99358 0.97442 1.21175 0.93975 0.95170 0.94415 1.20257 1.03035 0.93978 0.97070 0.77286 0.86748 1.17975 1.18278 0.85426 0.85157 0.85192 0.90527 0.90544 0.84868 0.84453 0.84026 0.90593 0.90610 0.88997 0.90672 0.77179 0.89991 0.88673 0.84142 0.84823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.49 12.77 -35.23 -0.45 -0.94 16 2 C -0.07 -0.02 2.82 36.00 0.10 0.08 16 3 Si 0.69 -0.58 29.79 -169.99 -5.06 -5.64 16 4 C -0.08 -0.07 5.39 -104.65 -0.56 -0.63 16 5 C -0.16 0.02 8.67 -39.56 -0.34 -0.32 16 6 C -0.07 0.03 10.04 -39.60 -0.40 -0.37 16 7 C -0.21 -0.04 9.04 -39.43 -0.36 -0.39 16 8 C 0.13 0.24 6.69 -39.22 -0.26 -0.02 16 9 O -0.31 -0.65 10.12 -19.41 -0.20 -0.85 16 10 C 0.10 -0.06 4.86 36.01 0.17 0.12 16 11 C -0.11 -0.02 5.50 -104.68 -0.58 -0.60 16 12 C -0.06 0.05 9.69 -39.49 -0.38 -0.33 16 13 C -0.13 0.17 10.03 -39.64 -0.40 -0.22 16 14 C -0.05 0.01 9.62 -39.17 -0.38 -0.36 16 15 C -0.13 -0.22 5.87 -104.98 -0.62 -0.84 16 16 C 0.51 1.68 7.90 34.61 0.27 1.95 16 17 O -0.50 -2.97 16.14 -19.24 -0.31 -3.28 16 18 O -0.35 -0.66 9.47 -40.51 -0.38 -1.04 16 19 C 0.08 0.06 5.31 37.16 0.20 0.26 16 20 C -0.11 0.11 4.02 -89.80 -0.36 -0.25 16 21 H 0.11 -0.19 8.14 -51.93 -0.42 -0.61 16 22 C -0.16 0.15 7.46 -25.92 -0.19 -0.05 16 23 C 0.08 -0.06 5.21 -25.93 -0.14 -0.20 16 24 H 0.09 -0.20 8.14 -51.93 -0.42 -0.62 16 25 O -0.56 -0.36 13.67 -35.23 -0.48 -0.84 16 26 C -0.12 0.09 7.47 -25.92 -0.19 -0.10 16 27 C -0.03 -0.04 9.25 -39.17 -0.36 -0.40 16 28 C -0.12 -0.26 9.55 -39.44 -0.38 -0.64 16 29 H 0.38 -1.12 8.70 45.56 0.40 -0.72 16 30 H 0.12 0.08 7.96 -51.93 -0.41 -0.33 16 31 H -0.25 -0.61 7.11 56.52 0.40 -0.21 16 32 H -0.26 -0.35 7.11 56.52 0.40 0.06 16 33 H 0.13 -0.25 4.87 -52.49 -0.26 -0.51 16 34 H 0.13 -0.34 8.06 -52.49 -0.42 -0.76 16 35 H 0.13 -0.23 6.30 -52.49 -0.33 -0.57 16 36 H 0.08 -0.18 7.59 -51.92 -0.39 -0.57 16 37 H 0.08 -0.12 7.62 -51.93 -0.40 -0.52 16 38 H 0.13 -0.37 8.06 -52.49 -0.42 -0.79 16 39 H 0.14 -0.48 8.06 -52.49 -0.42 -0.91 16 40 H 0.14 -0.24 7.61 -52.49 -0.40 -0.64 16 41 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 42 H 0.08 0.09 7.84 -51.93 -0.41 -0.31 16 43 H 0.09 0.01 7.90 -51.93 -0.41 -0.40 16 44 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 45 H 0.38 -1.29 9.12 45.56 0.42 -0.87 16 46 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 47 H 0.09 0.01 8.10 -51.93 -0.42 -0.41 16 48 H 0.14 0.22 7.65 -52.49 -0.40 -0.19 16 49 H 0.13 0.34 8.06 -52.49 -0.42 -0.09 16 LS Contribution 414.75 15.07 6.25 6.25 Total: 0.00 -9.31 414.75 -11.80 -21.11 By element: Atomic # 1 Polarization: -5.43 SS G_CDS: -6.02 Total: -11.45 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -5.15 Total: -3.32 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -1.82 Total: -6.94 kcal Atomic # 14 Polarization: -0.58 SS G_CDS: -5.06 Total: -5.64 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -9.31 -11.80 -21.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4065984_11354868.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.007 kcal (2) G-P(sol) polarization free energy of solvation -9.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds