Wall clock time and date at job start Sat Mar 6 2021 07:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86298 * 109.46956 * 2 1 4 4 C 1.50697 * 109.47531 * 239.99609 * 2 1 3 5 5 C 1.38242 * 119.96942 * 120.01915 * 4 2 1 6 6 C 1.38291 * 120.11313 * 180.02562 * 5 4 2 7 7 C 1.38133 * 120.05237 * 359.68342 * 6 5 4 8 8 C 1.38754 * 119.93975 * 0.59534 * 7 6 5 9 9 O 1.35895 * 120.05175 * 179.69914 * 8 7 6 10 10 C 1.42899 * 117.00478 * 359.72583 * 9 8 7 11 11 C 1.50700 * 109.47692 * 179.97438 * 10 9 8 12 12 C 1.38345 * 119.92368 * 270.02640 * 11 10 9 13 13 C 1.38392 * 120.29887 * 179.97438 * 12 11 10 14 14 C 1.37924 * 120.15351 * 359.77730 * 13 12 11 15 15 C 1.39648 * 119.84451 * 0.45125 * 14 13 12 16 16 C 1.47727 * 120.14705 * 179.80467 * 15 14 13 17 17 O 1.21471 * 120.00020 * 179.72253 * 16 15 14 18 18 O 1.34706 * 120.00020 * 359.72669 * 16 15 14 19 19 C 1.45201 * 117.00080 * 179.97438 * 18 16 15 20 20 C 1.52996 * 109.47238 * 179.97438 * 19 18 16 21 21 H 1.08997 * 112.85137 * 316.19652 * 20 19 18 22 22 C 1.53790 * 113.61177 * 87.50440 * 20 19 18 23 23 C 1.53776 * 87.07856 * 139.98064 * 22 20 19 24 24 H 1.09002 * 113.69340 * 89.12692 * 23 22 20 25 25 O 1.42903 * 113.61415 * 220.01390 * 23 22 20 26 26 C 1.53774 * 87.08537 * 334.56697 * 23 22 20 27 27 C 1.37966 * 119.92379 * 89.99698 * 11 10 9 28 28 C 1.38161 * 119.97443 * 300.00679 * 4 2 1 29 29 H 0.96702 * 113.99849 * 60.00488 * 1 2 3 30 30 H 1.08997 * 109.46730 * 119.99636 * 2 1 3 31 31 H 1.48500 * 110.00255 * 59.99950 * 3 2 1 32 32 H 1.48504 * 110.00018 * 181.31393 * 3 2 1 33 33 H 1.08001 * 119.95074 * 359.97438 * 5 4 2 34 34 H 1.07995 * 119.97785 * 179.97438 * 6 5 4 35 35 H 1.08001 * 120.02728 * 180.32041 * 7 6 5 36 36 H 1.09008 * 109.47277 * 59.99761 * 10 9 8 37 37 H 1.09001 * 109.47082 * 300.00291 * 10 9 8 38 38 H 1.08000 * 119.84941 * 359.97438 * 12 11 10 39 39 H 1.08001 * 119.91895 * 180.02562 * 13 12 11 40 40 H 1.07997 * 120.07644 * 180.25407 * 14 13 12 41 41 H 1.08997 * 109.46974 * 59.99870 * 19 18 16 42 42 H 1.09002 * 109.46750 * 300.00037 * 19 18 16 43 43 H 1.08994 * 113.61345 * 25.43132 * 22 20 19 44 44 H 1.08999 * 113.60844 * 254.52700 * 22 20 19 45 45 H 0.96700 * 114.00311 * 277.50236 * 25 23 22 46 46 H 1.08995 * 113.62199 * 139.98636 * 26 23 22 47 47 H 1.09002 * 113.61399 * 270.88538 * 26 23 22 48 48 H 1.07996 * 120.07779 * 0.02839 * 27 11 10 49 49 H 1.07999 * 120.03034 * 0.03859 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7265 -0.0382 -2.1397 6 6 3.1887 -0.6871 -3.2700 7 6 2.8622 -2.0112 -3.4898 8 6 2.0595 -2.6864 -2.5814 9 8 1.7319 -3.9873 -2.7985 10 6 2.2437 -4.5960 -3.9857 11 6 1.7804 -6.0282 -4.0559 12 6 2.5469 -7.0302 -3.4881 13 6 2.1286 -8.3480 -3.5476 14 6 0.9409 -8.6704 -4.1703 15 6 0.1646 -7.6645 -4.7498 16 6 -1.1065 -8.0029 -5.4222 17 8 -1.7821 -7.1252 -5.9210 18 8 -1.5164 -9.2846 -5.4822 19 6 -2.7754 -9.5432 -6.1578 20 6 -3.0726 -11.0437 -6.1258 21 1 -2.1987 -11.6533 -6.3554 22 6 -3.8270 -11.4954 -4.8641 23 6 -4.6463 -12.4195 -5.7803 24 1 -4.2042 -13.4067 -5.9152 25 8 -6.0343 -12.4743 -5.4446 26 6 -4.3269 -11.4404 -6.9222 27 6 0.5924 -6.3372 -4.6859 28 6 1.5972 -2.0332 -1.4485 29 1 -0.3933 0.4416 -0.7651 30 1 1.7922 -0.5138 0.8900 31 1 1.5614 2.4679 1.2085 32 1 3.5345 1.7703 -0.0320 33 1 2.9865 0.9959 -1.9676 34 1 3.8094 -0.1597 -3.9792 35 1 3.2277 -2.5190 -4.3700 36 1 3.3333 -4.5674 -3.9679 37 1 1.8803 -4.0529 -4.8581 38 1 3.4760 -6.7828 -2.9961 39 1 2.7316 -9.1253 -3.1019 40 1 0.6136 -9.6987 -4.2124 41 1 -2.7076 -9.2086 -7.1929 42 1 -3.5762 -9.0029 -5.6530 43 1 -4.4170 -10.7043 -4.4015 44 1 -3.2017 -12.0313 -4.1500 45 1 -6.2414 -13.0885 -4.7270 46 1 -4.1053 -11.9316 -7.8696 47 1 -5.0537 -10.6342 -7.0223 48 1 -0.0050 -5.5541 -5.1287 49 1 0.9757 -2.5579 -0.7380 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4065984_11354868.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:32:15 Heat of formation + Delta-G solvation = -117.077661 kcal Electronic energy + Delta-G solvation = -31443.622200 eV Core-core repulsion = 26882.827674 eV Total energy + Delta-G solvation = -4560.794526 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.154 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.87443 -41.34540 -40.46132 -39.94942 -38.96088 -37.66230 -37.25849 -36.01696 -33.68764 -32.46562 -32.43490 -31.09125 -29.73158 -27.77965 -26.78329 -26.63556 -25.65645 -23.66330 -23.41305 -23.18743 -22.29120 -21.67835 -20.57993 -19.22596 -18.95285 -18.70755 -18.14635 -17.82954 -17.61695 -17.20646 -17.18763 -16.99231 -16.89805 -16.41065 -16.18139 -15.87931 -15.58980 -15.41987 -15.20377 -15.06434 -14.86479 -14.54495 -14.30173 -14.20122 -14.09092 -13.74127 -13.54382 -13.50918 -13.46799 -12.93678 -12.89051 -12.81545 -12.61795 -12.45417 -12.23125 -12.19863 -12.00866 -11.99401 -11.79028 -11.66801 -11.63924 -11.24783 -10.76750 -10.52350 -10.19972 -10.10334 -9.92314 -9.26637 -4.99005 -0.48670 0.07529 0.20368 0.39539 1.28316 1.32012 1.39360 1.64225 1.94497 2.16249 2.67351 2.76170 3.17349 3.36142 3.42917 3.46352 3.54043 3.57071 3.66866 3.70948 3.80035 3.84006 3.91655 3.92815 4.05413 4.08676 4.13022 4.15803 4.18164 4.20812 4.24235 4.30124 4.39821 4.43875 4.51867 4.60749 4.64706 4.68075 4.72118 4.76497 4.81367 4.94644 4.97684 5.06763 5.12422 5.12829 5.24898 5.27699 5.31205 5.36733 5.37675 5.44387 5.69028 5.71343 6.36183 6.50848 6.73085 6.86403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.083 4.083 3 Si 0.789 3.211 4 C -0.085 4.085 5 C -0.159 4.159 6 C -0.072 4.072 7 C -0.207 4.207 8 C 0.117 3.883 9 O -0.329 6.329 10 C 0.099 3.901 11 C -0.116 4.116 12 C -0.055 4.055 13 C -0.130 4.130 14 C -0.048 4.048 15 C -0.149 4.149 16 C 0.509 3.491 17 O -0.540 6.540 18 O -0.345 6.345 19 C 0.076 3.924 20 C -0.102 4.102 21 H 0.122 0.878 22 C -0.164 4.164 23 C 0.076 3.924 24 H 0.106 0.894 25 O -0.584 6.584 26 C -0.125 4.125 27 C -0.044 4.044 28 C -0.148 4.148 29 H 0.395 0.605 30 H 0.104 0.896 31 H -0.300 1.300 32 H -0.280 1.280 33 H 0.148 0.852 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.156 0.844 39 H 0.166 0.834 40 H 0.156 0.844 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.396 0.604 46 H 0.093 0.907 47 H 0.080 0.920 48 H 0.128 0.872 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.538 -2.624 -2.427 6.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.192 4.192 3 Si 0.694 3.306 4 C -0.085 4.085 5 C -0.177 4.177 6 C -0.090 4.090 7 C -0.226 4.226 8 C 0.072 3.928 9 O -0.243 6.243 10 C 0.025 3.975 11 C -0.116 4.116 12 C -0.073 4.073 13 C -0.147 4.147 14 C -0.066 4.066 15 C -0.150 4.150 16 C 0.356 3.644 17 O -0.431 6.431 18 O -0.262 6.262 19 C 0.003 3.997 20 C -0.120 4.120 21 H 0.140 0.860 22 C -0.202 4.202 23 C 0.018 3.982 24 H 0.124 0.876 25 O -0.392 6.392 26 C -0.163 4.163 27 C -0.062 4.062 28 C -0.167 4.167 29 H 0.245 0.755 30 H 0.121 0.879 31 H -0.229 1.229 32 H -0.207 1.207 33 H 0.165 0.835 34 H 0.176 0.824 35 H 0.168 0.832 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.174 0.826 39 H 0.184 0.816 40 H 0.174 0.826 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.104 0.896 45 H 0.246 0.754 46 H 0.112 0.888 47 H 0.099 0.901 48 H 0.146 0.854 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.700 -1.840 -1.995 6.313 hybrid contribution -0.377 -0.884 0.477 1.073 sum 5.323 -2.724 -1.518 6.169 Atomic orbital electron populations 1.86470 1.17372 1.82278 1.50435 1.25367 0.85273 1.11609 0.96906 0.93500 0.77840 0.74568 0.84646 1.20215 0.97777 0.93498 0.97010 1.21187 1.00394 1.00737 0.95360 1.21300 0.97395 0.93518 0.96804 1.21593 1.02754 0.96963 1.01251 1.19165 0.95238 0.83493 0.94930 1.86127 1.71593 1.22841 1.43762 1.21749 0.99958 0.89194 0.86577 1.19498 0.95676 0.94869 1.01519 1.21756 0.99563 0.92418 0.93597 1.21566 0.96366 0.97258 0.99552 1.21797 0.93084 0.99709 0.92051 1.19126 0.94265 0.95365 1.06280 1.21493 0.85720 0.80760 0.76428 1.90837 1.56793 1.49673 1.45836 1.86506 1.40676 1.27669 1.71323 1.23233 0.82122 0.97320 0.97037 1.22364 0.98553 0.92777 0.98309 0.85976 1.23766 0.98869 1.00412 0.97137 1.23406 0.81174 0.98193 0.95473 0.87647 1.86488 1.25127 1.68479 1.59107 1.23108 0.95639 0.99235 0.98283 1.21196 0.94717 0.94990 0.95318 1.20292 1.04024 0.94833 0.97555 0.75493 0.87865 1.22861 1.20700 0.83499 0.82448 0.83214 0.88371 0.89904 0.82641 0.81631 0.82619 0.90781 0.91751 0.90504 0.89615 0.75411 0.88829 0.90097 0.85408 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.66 12.77 -148.98 -1.90 -3.57 16 2 C -0.08 -0.13 2.82 71.23 0.20 0.07 16 3 Si 0.79 -1.38 29.79 68.60 2.04 0.66 16 4 C -0.08 -0.20 5.39 -19.88 -0.11 -0.31 16 5 C -0.16 0.19 8.67 22.28 0.19 0.38 16 6 C -0.07 0.17 10.04 22.26 0.22 0.39 16 7 C -0.21 0.07 9.04 22.37 0.20 0.28 16 8 C 0.12 0.52 6.69 22.51 0.15 0.67 16 9 O -0.33 -1.73 10.12 -92.37 -0.93 -2.66 16 10 C 0.10 -0.11 4.86 71.24 0.35 0.24 16 11 C -0.12 -0.08 5.50 -19.90 -0.11 -0.19 16 12 C -0.06 0.16 9.69 22.33 0.22 0.38 16 13 C -0.13 0.52 10.03 22.23 0.22 0.75 16 14 C -0.05 0.04 9.62 22.54 0.22 0.25 16 15 C -0.15 -0.71 5.87 -20.10 -0.12 -0.83 16 16 C 0.51 4.39 7.90 70.33 0.56 4.95 16 17 O -0.54 -7.98 16.14 19.93 0.32 -7.66 16 18 O -0.35 -1.71 9.47 -56.16 -0.53 -2.24 16 19 C 0.08 0.23 5.31 71.98 0.38 0.61 16 20 C -0.10 0.18 4.02 -10.27 -0.04 0.14 16 21 H 0.12 -0.55 8.14 -2.39 -0.02 -0.57 16 22 C -0.16 0.25 7.46 31.12 0.23 0.49 16 23 C 0.08 -0.14 5.21 31.12 0.16 0.02 16 24 H 0.11 -0.63 8.14 -2.39 -0.02 -0.65 16 25 O -0.58 -0.89 13.67 -148.98 -2.04 -2.93 16 26 C -0.13 0.15 7.47 31.12 0.23 0.38 16 27 C -0.04 -0.20 9.25 22.54 0.21 0.01 16 28 C -0.15 -0.88 9.55 22.36 0.21 -0.66 16 29 H 0.40 -2.05 8.70 -74.06 -0.64 -2.69 16 30 H 0.10 0.33 7.96 -2.39 -0.02 0.31 16 31 H -0.30 -1.75 7.11 99.48 0.71 -1.04 16 32 H -0.28 -0.56 7.11 99.48 0.71 0.14 16 33 H 0.15 -0.83 4.87 -2.91 -0.01 -0.84 16 34 H 0.16 -1.26 8.06 -2.91 -0.02 -1.28 16 35 H 0.15 -0.76 6.30 -2.91 -0.02 -0.78 16 36 H 0.10 -0.57 7.59 -2.38 -0.02 -0.59 16 37 H 0.08 -0.24 7.62 -2.39 -0.02 -0.26 16 38 H 0.16 -1.18 8.06 -2.91 -0.02 -1.21 16 39 H 0.17 -1.62 8.06 -2.91 -0.02 -1.65 16 40 H 0.16 -0.65 7.61 -2.91 -0.02 -0.68 16 41 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.06 0.33 7.84 -2.39 -0.02 0.31 16 43 H 0.08 0.12 7.90 -2.39 -0.02 0.10 16 44 H 0.09 -0.31 8.14 -2.39 -0.02 -0.33 16 45 H 0.40 -2.66 9.12 -74.06 -0.68 -3.34 16 46 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 47 H 0.08 0.14 8.10 -2.39 -0.02 0.12 16 48 H 0.13 0.79 7.65 -2.91 -0.02 0.77 16 49 H 0.12 0.95 8.06 -2.91 -0.02 0.93 16 Total: 0.00 -24.01 414.75 0.26 -23.75 By element: Atomic # 1 Polarization: -13.08 SS G_CDS: -0.29 Total: -13.37 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 3.58 Total: 8.01 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -5.08 Total: -19.05 kcal Atomic # 14 Polarization: -1.38 SS G_CDS: 2.04 Total: 0.66 kcal Total: -24.01 0.26 -23.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4065984_11354868.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.328 kcal (2) G-P(sol) polarization free energy of solvation -24.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds