Wall clock time and date at job start Sat Mar 6 2021 07:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86303 * 109.47259 * 2 1 4 4 C 1.50703 * 109.47371 * 240.00006 * 2 1 3 5 5 C 1.38243 * 119.97191 * 120.02284 * 4 2 1 6 6 C 1.38289 * 120.10961 * 179.97438 * 5 4 2 7 7 C 1.38131 * 120.05349 * 359.76253 * 6 5 4 8 8 C 1.38751 * 119.94118 * 0.51233 * 7 6 5 9 9 O 1.35909 * 120.05258 * 179.73899 * 8 7 6 10 10 C 1.42900 * 116.99761 * 359.73093 * 9 8 7 11 11 C 1.50699 * 109.46794 * 179.97438 * 10 9 8 12 12 C 1.38343 * 119.92490 * 90.00167 * 11 10 9 13 13 C 1.38398 * 120.30324 * 180.02562 * 12 11 10 14 14 C 1.37922 * 120.14731 * 359.97438 * 13 12 11 15 15 C 1.39647 * 119.84852 * 359.97438 * 14 13 12 16 16 C 1.47729 * 120.14594 * 179.97438 * 15 14 13 17 17 O 1.21477 * 119.99798 * 180.02562 * 16 15 14 18 18 O 1.34714 * 119.99973 * 0.02562 * 16 15 14 19 19 C 1.45203 * 116.99461 * 180.02562 * 18 16 15 20 20 C 1.53006 * 109.46581 * 179.97438 * 19 18 16 21 21 H 1.08993 * 109.46955 * 305.00005 * 20 19 18 22 22 C 1.52997 * 109.47127 * 64.99994 * 20 19 18 23 23 C 1.52996 * 109.47131 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.46972 * 299.99541 * 23 22 20 25 25 H 1.08996 * 109.47407 * 300.00487 * 24 23 22 26 26 O 1.42905 * 109.47086 * 179.97438 * 24 23 22 27 27 C 1.53002 * 109.47128 * 60.00146 * 24 23 22 28 28 C 1.52999 * 109.46626 * 184.99533 * 20 19 18 29 29 C 1.37969 * 119.92357 * 270.22852 * 11 10 9 30 30 C 1.38161 * 119.96667 * 299.99632 * 4 2 1 31 31 H 0.96699 * 114.00034 * 300.00661 * 1 2 3 32 32 H 1.09000 * 109.47136 * 119.99607 * 2 1 3 33 33 H 1.48497 * 110.00194 * 178.67820 * 3 2 1 34 34 H 1.48501 * 109.99841 * 299.99671 * 3 2 1 35 35 H 1.07996 * 119.94400 * 359.97438 * 5 4 2 36 36 H 1.07999 * 119.97312 * 180.02562 * 6 5 4 37 37 H 1.08003 * 120.02259 * 180.27859 * 7 6 5 38 38 H 1.08996 * 109.47604 * 59.99872 * 10 9 8 39 39 H 1.09008 * 109.47065 * 299.99636 * 10 9 8 40 40 H 1.08002 * 119.85003 * 359.97438 * 12 11 10 41 41 H 1.07998 * 119.92042 * 179.97438 * 13 12 11 42 42 H 1.07997 * 120.06950 * 180.02562 * 14 13 12 43 43 H 1.08992 * 109.47461 * 59.99943 * 19 18 16 44 44 H 1.08997 * 109.46784 * 299.99522 * 19 18 16 45 45 H 1.09001 * 109.47289 * 299.99953 * 22 20 19 46 46 H 1.09004 * 109.47261 * 59.99697 * 22 20 19 47 47 H 1.08996 * 109.47134 * 180.02562 * 23 22 20 48 48 H 1.08992 * 109.47534 * 59.99520 * 23 22 20 49 49 H 0.96699 * 113.99523 * 60.00960 * 26 24 23 50 50 H 1.09001 * 109.47600 * 179.97438 * 27 24 23 51 51 H 1.09004 * 109.47006 * 59.99907 * 27 24 23 52 52 H 1.08993 * 109.47839 * 299.99931 * 28 20 19 53 53 H 1.09000 * 109.47160 * 60.00369 * 28 20 19 54 54 H 1.07992 * 120.07906 * 0.02562 * 29 11 10 55 55 H 1.08000 * 120.03545 * 0.04783 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.7265 -0.0381 -2.1398 6 6 3.1896 -0.6874 -3.2696 7 6 2.8624 -2.0113 -3.4896 8 6 2.0598 -2.6864 -2.5813 9 8 1.7321 -3.9875 -2.7982 10 6 2.2442 -4.5961 -3.9854 11 6 1.7809 -6.0284 -4.0555 12 6 0.5898 -6.3383 -4.6873 13 6 0.1566 -7.6510 -4.7558 14 6 0.9112 -8.6596 -4.1942 15 6 2.1150 -8.3540 -3.5558 16 6 2.9282 -9.4291 -2.9515 17 8 3.9747 -9.1602 -2.3965 18 8 2.5091 -10.7078 -3.0160 19 6 3.3585 -11.7116 -2.4001 20 6 2.7230 -13.0927 -2.5725 21 1 1.7085 -13.0780 -2.1742 22 6 2.6822 -13.4535 -4.0587 23 6 2.0461 -14.8342 -4.2311 24 6 2.8749 -15.8754 -3.4762 25 1 3.8895 -15.8905 -3.8744 26 8 2.2805 -17.1650 -3.6367 27 6 2.9158 -15.5147 -1.9899 28 6 3.5524 -14.1335 -1.8176 29 6 2.5433 -7.0271 -3.4854 30 6 1.5973 -2.0332 -1.4484 31 1 -0.3933 0.4418 0.7650 32 1 1.7923 -0.5138 0.8900 33 1 3.5346 1.7703 0.0322 34 1 1.5616 2.4679 -1.2085 35 1 2.9865 0.9958 -1.9676 36 1 3.8110 -0.1602 -3.9783 37 1 3.2280 -2.5191 -4.3699 38 1 3.3337 -4.5675 -3.9676 39 1 1.8808 -4.0531 -4.8579 40 1 -0.0051 -5.5522 -5.1284 41 1 -0.7744 -7.8859 -5.2502 42 1 0.5722 -9.6836 -4.2487 43 1 3.4685 -11.4926 -1.3381 44 1 4.3387 -11.7002 -2.8769 45 1 2.0914 -12.7120 -4.5966 46 1 3.6967 -13.4681 -4.4571 47 1 2.0174 -15.0914 -5.2899 48 1 1.0316 -14.8192 -3.8329 49 1 2.2216 -17.4592 -4.5560 50 1 3.5059 -16.2566 -1.4519 51 1 1.9012 -15.4996 -1.5916 52 1 4.5669 -14.1481 -2.2159 53 1 3.5815 -13.8765 -0.7588 54 1 3.4708 -6.7833 -2.9889 55 1 0.9758 -2.5579 -0.7379 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4065984_16737258.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:46:34 Heat of formation + Delta-G solvation = -157.373275 kcal Electronic energy + Delta-G solvation = -35611.054499 eV Core-core repulsion = 30737.437386 eV Total energy + Delta-G solvation = -4873.617113 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 399.186 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.87328 -41.42232 -40.34960 -39.89393 -38.95621 -37.83500 -37.32957 -36.59208 -33.75051 -32.69099 -32.52610 -31.84059 -31.82152 -31.20160 -27.93272 -27.08574 -26.62215 -25.18905 -23.81534 -23.81152 -23.20270 -22.43171 -22.17104 -21.62080 -20.86979 -19.07632 -18.91868 -18.42413 -18.32647 -18.17534 -17.62826 -17.56137 -17.25323 -17.16050 -17.00029 -16.47171 -15.92475 -15.80974 -15.71472 -15.52704 -15.38475 -15.12737 -14.86321 -14.65529 -14.64118 -14.50351 -14.29551 -14.08957 -13.90873 -13.71576 -13.64824 -13.51667 -13.23879 -13.20968 -13.14402 -12.84075 -12.59441 -12.46241 -12.39231 -12.18134 -12.15804 -12.04597 -11.96837 -11.84976 -11.76081 -11.66395 -11.53430 -11.11823 -10.72408 -10.44351 -10.21057 -10.12291 -9.97701 -9.40751 -4.94320 -0.49262 0.05565 0.06715 0.22829 1.26567 1.31563 1.41660 1.64444 1.95727 2.08735 2.50726 2.73071 3.18082 3.34544 3.38017 3.45278 3.59861 3.67565 3.69888 3.70844 3.73958 3.79372 3.84856 3.89794 4.01679 4.03145 4.11200 4.13217 4.13621 4.15054 4.22169 4.28136 4.30627 4.32675 4.39737 4.41253 4.45326 4.46245 4.53692 4.57030 4.65882 4.78757 4.79919 4.84627 4.92773 5.02291 5.05272 5.08504 5.11435 5.12943 5.14835 5.16258 5.19737 5.27032 5.28849 5.29839 5.30810 5.42542 5.54040 5.67895 6.25105 6.52377 6.85175 6.87798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.086 4.086 3 Si 0.785 3.215 4 C -0.052 4.052 5 C -0.183 4.183 6 C -0.074 4.074 7 C -0.207 4.207 8 C 0.124 3.876 9 O -0.323 6.323 10 C 0.097 3.903 11 C -0.116 4.116 12 C -0.055 4.055 13 C -0.130 4.130 14 C -0.047 4.047 15 C -0.148 4.148 16 C 0.511 3.489 17 O -0.539 6.539 18 O -0.345 6.345 19 C 0.069 3.931 20 C -0.081 4.081 21 H 0.085 0.915 22 C -0.110 4.110 23 C -0.145 4.145 24 C 0.099 3.901 25 H 0.061 0.939 26 O -0.590 6.590 27 C -0.112 4.112 28 C -0.106 4.106 29 C -0.043 4.043 30 C -0.142 4.142 31 H 0.404 0.596 32 H 0.092 0.908 33 H -0.287 1.287 34 H -0.294 1.294 35 H 0.121 0.879 36 H 0.154 0.846 37 H 0.156 0.844 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.155 0.845 41 H 0.166 0.834 42 H 0.156 0.844 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.065 0.935 49 H 0.393 0.607 50 H 0.069 0.931 51 H 0.064 0.936 52 H 0.075 0.925 53 H 0.079 0.921 54 H 0.128 0.872 55 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.071 1.303 -2.173 3.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.195 4.195 3 Si 0.690 3.310 4 C -0.052 4.052 5 C -0.201 4.201 6 C -0.092 4.092 7 C -0.225 4.225 8 C 0.079 3.921 9 O -0.237 6.237 10 C 0.023 3.977 11 C -0.116 4.116 12 C -0.073 4.073 13 C -0.147 4.147 14 C -0.065 4.065 15 C -0.149 4.149 16 C 0.357 3.643 17 O -0.431 6.431 18 O -0.262 6.262 19 C -0.004 4.004 20 C -0.100 4.100 21 H 0.103 0.897 22 C -0.147 4.147 23 C -0.183 4.183 24 C 0.041 3.959 25 H 0.079 0.921 26 O -0.399 6.399 27 C -0.149 4.149 28 C -0.144 4.144 29 C -0.062 4.062 30 C -0.161 4.161 31 H 0.255 0.745 32 H 0.110 0.890 33 H -0.214 1.214 34 H -0.222 1.222 35 H 0.138 0.862 36 H 0.171 0.829 37 H 0.174 0.826 38 H 0.101 0.899 39 H 0.116 0.884 40 H 0.172 0.828 41 H 0.183 0.817 42 H 0.174 0.826 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.086 0.914 47 H 0.095 0.905 48 H 0.084 0.916 49 H 0.243 0.757 50 H 0.087 0.913 51 H 0.083 0.917 52 H 0.094 0.906 53 H 0.098 0.902 54 H 0.146 0.854 55 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.350 1.495 -2.197 2.980 hybrid contribution 0.615 -0.635 -0.705 1.130 sum -0.735 0.860 -2.902 3.115 Atomic orbital electron populations 1.86442 1.17071 1.82500 1.51371 1.24969 0.86058 1.11604 0.96909 0.94333 0.77179 0.74765 0.84713 1.19509 0.96490 0.93302 0.95894 1.20988 1.02716 0.99697 0.96658 1.21204 0.97553 0.94032 0.96377 1.21568 1.02904 0.96375 1.01665 1.19149 0.94715 0.83593 0.94674 1.86140 1.71219 1.22351 1.44021 1.21787 0.99530 0.89488 0.86874 1.19463 0.96964 0.93365 1.01817 1.21747 0.93324 0.98129 0.94127 1.21562 1.01370 0.91720 1.00054 1.21794 0.91108 1.01800 0.91835 1.19122 0.98022 0.91237 1.06552 1.21429 0.83538 0.83060 0.76237 1.90838 1.25181 1.84209 1.42835 1.86501 1.51436 1.16061 1.72165 1.23317 0.93349 0.85746 0.97994 1.21221 1.00806 0.90491 0.97443 0.89683 1.21514 1.01726 0.96526 0.94964 1.22202 1.00001 0.94958 1.01107 1.21919 0.95586 0.82171 0.96223 0.92136 1.86484 1.84501 1.35034 1.33839 1.21456 1.01878 0.96633 0.94981 1.21452 0.99283 0.92540 1.01086 1.21183 0.99389 0.90939 0.94663 1.20344 1.03539 0.94413 0.97783 0.74457 0.88974 1.21408 1.22211 0.86194 0.82882 0.82634 0.89879 0.88402 0.82755 0.81662 0.82611 0.91101 0.90921 0.90843 0.91381 0.90482 0.91619 0.75720 0.91261 0.91674 0.90609 0.90196 0.85406 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.97 12.74 -148.98 -1.90 -2.87 16 2 C -0.09 -0.14 2.81 71.24 0.20 0.06 16 3 Si 0.78 -0.88 29.79 68.60 2.04 1.16 16 4 C -0.05 -0.38 5.42 -19.88 -0.11 -0.49 16 5 C -0.18 -1.19 8.67 22.28 0.19 -0.99 16 6 C -0.07 -0.26 10.04 22.26 0.22 -0.04 16 7 C -0.21 -0.66 9.04 22.37 0.20 -0.45 16 8 C 0.12 0.86 6.69 22.51 0.15 1.01 16 9 O -0.32 -2.05 10.12 -92.52 -0.94 -2.99 16 10 C 0.10 -0.01 4.86 71.24 0.35 0.34 16 11 C -0.12 -0.13 5.50 -19.90 -0.11 -0.24 16 12 C -0.06 0.14 9.69 22.33 0.22 0.35 16 13 C -0.13 0.49 10.03 22.23 0.22 0.72 16 14 C -0.05 0.04 9.62 22.54 0.22 0.26 16 15 C -0.15 -0.65 5.87 -20.10 -0.12 -0.77 16 16 C 0.51 3.95 7.90 70.33 0.56 4.50 16 17 O -0.54 -7.39 16.14 19.91 0.32 -7.07 16 18 O -0.35 -1.34 9.02 -56.24 -0.51 -1.85 16 19 C 0.07 0.09 4.85 71.98 0.35 0.44 16 20 C -0.08 0.16 2.43 -10.79 -0.03 0.14 16 21 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 22 C -0.11 0.31 5.10 30.59 0.16 0.47 16 23 C -0.14 0.42 5.55 30.59 0.17 0.58 16 24 C 0.10 -0.09 3.47 30.60 0.11 0.02 16 25 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 26 O -0.59 -1.07 13.32 -148.98 -1.98 -3.05 16 27 C -0.11 0.05 5.57 30.61 0.17 0.22 16 28 C -0.11 0.30 5.21 30.61 0.16 0.46 16 29 C -0.04 -0.20 9.25 22.54 0.21 0.01 16 30 C -0.14 -1.22 9.55 22.36 0.21 -1.01 16 31 H 0.40 -3.75 8.74 -74.06 -0.65 -4.40 16 32 H 0.09 -0.18 7.96 -2.39 -0.02 -0.20 16 33 H -0.29 -1.13 7.11 99.48 0.71 -0.43 16 34 H -0.29 -1.78 7.11 99.48 0.71 -1.08 16 35 H 0.12 0.63 4.87 -2.91 -0.01 0.62 16 36 H 0.15 -0.30 8.06 -2.91 -0.02 -0.32 16 37 H 0.16 -0.40 6.30 -2.91 -0.02 -0.42 16 38 H 0.08 -0.16 7.59 -2.39 -0.02 -0.17 16 39 H 0.10 -0.44 7.62 -2.38 -0.02 -0.46 16 40 H 0.15 -1.06 8.06 -2.91 -0.02 -1.08 16 41 H 0.17 -1.56 8.06 -2.91 -0.02 -1.59 16 42 H 0.16 -0.67 7.61 -2.91 -0.02 -0.69 16 43 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.07 -0.17 7.82 -2.39 -0.02 -0.19 16 46 H 0.07 -0.21 8.14 -2.38 -0.02 -0.23 16 47 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 48 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 49 H 0.39 -2.37 9.08 -74.06 -0.67 -3.05 16 50 H 0.07 0.03 8.14 -2.39 -0.02 0.02 16 51 H 0.06 0.07 8.14 -2.38 -0.02 0.05 16 52 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 53 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 54 H 0.13 0.78 7.65 -2.91 -0.02 0.76 16 55 H 0.13 1.11 8.06 -2.91 -0.02 1.09 16 Total: 0.00 -24.35 449.49 0.37 -23.98 By element: Atomic # 1 Polarization: -12.55 SS G_CDS: -0.36 Total: -12.91 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 3.70 Total: 5.61 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -5.00 Total: -17.84 kcal Atomic # 14 Polarization: -0.88 SS G_CDS: 2.04 Total: 1.16 kcal Total: -24.35 0.37 -23.98 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4065984_16737258.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.394 kcal (2) G-P(sol) polarization free energy of solvation -24.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds