Wall clock time and date at job start Sat Mar 6 2021 10:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86301 * 109.46781 * 2 1 4 4 C 1.86297 * 109.47108 * 239.99906 * 2 1 3 5 5 C 1.86301 * 109.46918 * 119.99891 * 2 1 3 6 6 O 1.45197 * 109.47111 * 59.99968 * 5 2 1 7 7 C 1.34713 * 116.99587 * 75.00012 * 6 5 2 8 8 O 1.21470 * 120.00303 * 359.97438 * 7 6 5 9 9 C 1.47731 * 119.99818 * 179.97438 * 7 6 5 10 10 C 1.39608 * 120.14985 * 359.97438 * 9 7 6 11 11 C 1.37966 * 119.84995 * 179.97438 * 10 9 7 12 12 C 1.38342 * 120.14663 * 0.27858 * 11 10 9 13 13 C 1.38395 * 120.30516 * 359.44607 * 12 11 10 14 14 C 1.50697 * 119.92624 * 180.25590 * 13 12 11 15 15 O 1.42896 * 109.47112 * 270.29492 * 14 13 12 16 16 C 1.35903 * 117.00199 * 180.02562 * 15 14 13 17 17 C 1.38719 * 120.05328 * 359.72437 * 16 15 14 18 18 C 1.38164 * 119.94006 * 179.72434 * 17 16 15 19 19 C 1.38241 * 120.05671 * 0.57364 * 18 17 16 20 20 C 1.38291 * 120.11243 * 359.68001 * 19 18 17 21 21 C 1.50700 * 119.97063 * 180.02562 * 20 19 18 22 22 O 1.42901 * 109.46912 * 120.02167 * 21 20 19 23 23 Si 1.86306 * 109.47160 * 0.02562 * 21 20 19 24 24 H 1.48504 * 109.46847 * 60.00405 * 23 21 20 25 25 H 1.48497 * 109.46706 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47235 * 300.00154 * 23 21 20 27 27 C 1.38111 * 120.05347 * 0.04310 * 20 19 18 28 28 C 1.37925 * 120.14718 * 0.55104 * 13 12 11 29 29 H 1.09000 * 109.47310 * 300.00356 * 1 2 3 30 30 H 1.09004 * 109.46929 * 60.00363 * 1 2 3 31 31 H 1.09001 * 109.46890 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47010 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47265 * 299.99398 * 3 2 1 34 34 H 1.09003 * 109.47445 * 60.00291 * 3 2 1 35 35 H 1.08993 * 109.47117 * 299.99963 * 4 2 1 36 36 H 1.09005 * 109.46981 * 60.00295 * 4 2 1 37 37 H 1.08998 * 109.46917 * 179.97438 * 4 2 1 38 38 H 1.09000 * 109.46928 * 299.99987 * 5 2 1 39 39 H 1.08998 * 109.46760 * 180.02562 * 5 2 1 40 40 H 1.08008 * 120.07365 * 359.95508 * 10 9 7 41 41 H 1.08002 * 119.92372 * 179.97438 * 11 10 9 42 42 H 1.08000 * 119.84804 * 179.71722 * 12 11 10 43 43 H 1.09001 * 109.47145 * 30.29232 * 14 13 12 44 44 H 1.09000 * 109.47321 * 150.29353 * 14 13 12 45 45 H 1.07995 * 120.02603 * 359.97438 * 17 16 15 46 46 H 1.07999 * 119.96677 * 180.27536 * 18 17 16 47 47 H 1.08003 * 119.94139 * 179.70178 * 19 18 17 48 48 H 1.08998 * 109.47378 * 240.02332 * 21 20 19 49 49 H 0.96696 * 113.99793 * 299.99835 * 22 21 20 50 50 H 1.08007 * 120.02826 * 180.02562 * 27 20 19 51 51 H 1.07997 * 120.07375 * 179.75027 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4840 -0.8782 1.5212 6 8 2.0000 -2.2471 1.5212 7 6 2.5964 -3.1066 0.6724 8 8 3.4958 -2.7229 -0.0482 9 6 2.1565 -4.5159 0.6182 10 6 1.1235 -4.9604 1.4454 11 6 0.7174 -6.2777 1.3892 12 6 1.3352 -7.1588 0.5198 13 6 2.3560 -6.7235 -0.3071 14 6 3.0192 -7.6893 -1.2550 15 8 4.1273 -8.3121 -0.6024 16 6 4.8394 -9.2171 -1.3242 17 6 4.4753 -9.5040 -2.6316 18 6 5.2043 -10.4202 -3.3652 19 6 6.2884 -11.0596 -2.7933 20 6 6.6501 -10.7793 -1.4884 21 6 7.8328 -11.4777 -0.8684 22 8 8.8064 -10.5082 -0.4756 23 14 8.5852 -12.6456 -2.1098 24 1 9.0313 -11.8805 -3.3019 25 1 9.7510 -13.3333 -1.4989 26 1 7.5736 -13.6530 -2.5181 27 6 5.9282 -9.8600 -0.7528 28 6 2.7719 -5.4093 -0.2612 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.5740 1.7565 0.0005 33 1 2.1207 2.2703 -0.8900 34 1 2.1206 2.2704 0.8900 35 1 2.1207 -1.9058 -1.5211 36 1 2.1207 -0.3643 -2.4111 37 1 3.5740 -0.8778 -1.5213 38 1 2.1206 -0.3643 2.4111 39 1 3.5740 -0.8778 1.5214 40 1 0.6436 -4.2746 2.1280 41 1 -0.0814 -6.6230 2.0289 42 1 1.0164 -8.1900 0.4830 43 1 2.3013 -8.4512 -1.5586 44 1 3.3714 -7.1508 -2.1348 45 1 3.6254 -9.0086 -3.0770 46 1 4.9240 -10.6406 -4.3846 47 1 6.8540 -11.7791 -3.3669 48 1 7.5055 -12.0392 0.0067 49 1 9.1429 -9.9707 -1.2056 50 1 6.2113 -9.6410 0.2663 51 1 3.5714 -5.0719 -0.9041 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_4065984_4858416.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 10:16:11 Heat of formation + Delta-G solvation = -132.381570 kcal Electronic energy + Delta-G solvation = -30617.291916 eV Core-core repulsion = 26378.072992 eV Total energy + Delta-G solvation = -4239.218924 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 374.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.67434 -41.26617 -40.07090 -38.94015 -37.29768 -37.22488 -33.68441 -32.45599 -32.41195 -31.07136 -29.72431 -28.51115 -28.37864 -28.28597 -27.67370 -26.61189 -25.02296 -23.67309 -23.19162 -22.22068 -21.47606 -19.21581 -18.86136 -18.14336 -17.96117 -17.34706 -17.26653 -17.22309 -16.97190 -16.90557 -16.18197 -15.86978 -15.59853 -15.33901 -14.99002 -14.75432 -14.68675 -14.59113 -14.37985 -14.20611 -14.02156 -13.91287 -13.83037 -13.59310 -13.50314 -13.41452 -13.26823 -13.07412 -13.01972 -12.95038 -12.81724 -12.60265 -12.46288 -12.23879 -12.18211 -12.00316 -11.92063 -11.53926 -11.45578 -10.92599 -10.77637 -10.49692 -10.41409 -10.13872 -10.09922 -9.89503 -9.23266 -0.40025 0.08469 0.21879 0.41881 1.13644 1.37583 1.43845 1.49616 1.51571 1.57201 1.82993 1.89981 1.98814 2.21239 2.51873 2.68754 2.78537 3.40973 3.50922 3.61801 3.65052 3.68995 3.81929 3.94807 3.97778 3.99669 4.11393 4.17227 4.19485 4.21527 4.38482 4.42715 4.56726 4.61319 4.64681 4.65523 4.66010 4.67728 4.72077 4.74833 4.78635 4.88431 4.94249 4.98672 5.13573 5.16348 5.25816 5.28097 5.37467 5.39860 5.43408 5.44409 5.49399 5.65709 5.68647 5.72844 6.37946 6.54714 6.79861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 0.999 3.001 3 C -0.446 4.446 4 C -0.437 4.437 5 C -0.238 4.238 6 O -0.332 6.332 7 C 0.493 3.507 8 O -0.488 6.488 9 C -0.127 4.127 10 C -0.053 4.053 11 C -0.133 4.133 12 C -0.058 4.058 13 C -0.109 4.109 14 C 0.102 3.898 15 O -0.307 6.307 16 C 0.131 3.869 17 C -0.205 4.205 18 C -0.072 4.072 19 C -0.164 4.164 20 C -0.081 4.081 21 C -0.082 4.082 22 O -0.537 6.537 23 Si 0.955 3.045 24 H -0.251 1.251 25 H -0.254 1.254 26 H -0.250 1.250 27 C -0.122 4.122 28 C -0.030 4.030 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.081 0.919 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.122 0.878 48 H 0.120 0.880 49 H 0.377 0.623 50 H 0.136 0.864 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.595 -0.437 -1.086 3.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.195 2.805 3 C -0.554 4.554 4 C -0.545 4.545 5 C -0.357 4.357 6 O -0.248 6.248 7 C 0.338 3.662 8 O -0.377 6.377 9 C -0.128 4.128 10 C -0.071 4.071 11 C -0.151 4.151 12 C -0.077 4.077 13 C -0.109 4.109 14 C 0.028 3.972 15 O -0.221 6.221 16 C 0.086 3.914 17 C -0.224 4.224 18 C -0.090 4.090 19 C -0.182 4.182 20 C -0.082 4.082 21 C -0.193 4.193 22 O -0.342 6.342 23 Si 0.777 3.223 24 H -0.175 1.175 25 H -0.178 1.178 26 H -0.174 1.174 27 C -0.141 4.141 28 C -0.049 4.049 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.129 0.871 39 H 0.100 0.900 40 H 0.160 0.840 41 H 0.155 0.845 42 H 0.151 0.849 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.224 0.776 50 H 0.154 0.846 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.034 -1.059 -1.057 3.383 hybrid contribution -0.207 0.664 -0.336 0.773 sum -3.241 -0.395 -1.394 3.550 Atomic orbital electron populations 1.26060 1.20033 1.04677 1.04594 0.79702 0.67680 0.67113 0.66009 1.26041 1.06522 1.18039 1.04847 1.26243 1.07063 1.07252 1.13900 1.28376 1.05383 0.83738 1.18194 1.86453 1.58964 1.21279 1.58112 1.21131 0.80499 0.86699 0.77880 1.90845 1.28566 1.78001 1.40273 1.19075 1.01055 0.90554 1.02143 1.21616 0.93501 0.96295 0.95658 1.21214 1.01035 0.93137 0.99749 1.21403 0.93613 1.00070 0.92563 1.19357 0.98157 0.93434 0.99970 1.21580 0.87276 0.94388 0.93990 1.86169 1.41915 1.53286 1.40746 1.19022 0.92015 0.89970 0.90419 1.21319 1.03419 1.03375 0.94282 1.20889 0.93977 0.94553 0.99602 1.20958 0.99652 1.02507 0.95075 1.20116 0.97121 0.97067 0.93849 1.25038 0.89008 0.97164 1.08062 1.86526 1.57568 1.51923 1.38169 0.85612 0.80412 0.78731 0.77502 1.17485 1.17829 1.17425 1.20253 0.94404 0.98044 1.01355 1.21169 0.96715 0.91716 0.95263 0.91049 0.90971 0.91090 0.90951 0.90642 0.91036 0.91587 0.91891 0.90399 0.87132 0.90037 0.83999 0.84475 0.84895 0.90527 0.90613 0.85192 0.85269 0.86053 0.86211 0.77568 0.84601 0.84136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.40 8.65 101.05 0.87 1.28 16 2 Si 1.00 -1.31 12.12 -169.99 -2.06 -3.37 16 3 C -0.45 0.56 8.65 101.05 0.87 1.44 16 4 C -0.44 -0.50 7.10 101.05 0.72 0.22 16 5 C -0.24 0.03 5.40 101.05 0.55 0.58 16 6 O -0.33 -0.54 9.17 -40.53 -0.37 -0.91 16 7 C 0.49 1.35 6.68 34.61 0.23 1.58 16 8 O -0.49 -2.12 12.05 -19.24 -0.23 -2.35 16 9 C -0.13 -0.21 5.87 -104.98 -0.62 -0.82 16 10 C -0.05 0.01 9.62 -39.17 -0.38 -0.37 16 11 C -0.13 0.16 10.03 -39.64 -0.40 -0.24 16 12 C -0.06 0.05 9.69 -39.49 -0.38 -0.33 16 13 C -0.11 -0.02 5.50 -104.68 -0.58 -0.60 16 14 C 0.10 -0.06 4.86 36.00 0.17 0.12 16 15 O -0.31 -0.64 10.12 -19.44 -0.20 -0.83 16 16 C 0.13 0.24 6.69 -39.21 -0.26 -0.02 16 17 C -0.21 -0.08 9.04 -39.43 -0.36 -0.44 16 18 C -0.07 -0.01 10.04 -39.61 -0.40 -0.40 16 19 C -0.16 -0.08 8.67 -39.56 -0.34 -0.43 16 20 C -0.08 -0.08 5.39 -104.65 -0.56 -0.64 16 21 C -0.08 0.01 2.82 36.01 0.10 0.11 16 22 O -0.54 -0.43 12.77 -35.23 -0.45 -0.88 16 23 Si 0.95 -0.47 25.07 -169.99 -4.26 -4.73 16 24 H -0.25 0.08 7.11 56.52 0.40 0.48 16 25 H -0.25 -0.24 7.11 56.52 0.40 0.16 16 26 H -0.25 0.01 7.11 56.52 0.40 0.41 16 27 C -0.12 -0.24 9.55 -39.44 -0.38 -0.62 16 28 C -0.03 -0.04 9.24 -39.17 -0.36 -0.40 16 29 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 30 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 31 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 32 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 33 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 34 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 35 H 0.06 0.15 6.28 -51.93 -0.33 -0.18 16 36 H 0.06 0.03 7.96 -51.93 -0.41 -0.38 16 37 H 0.08 0.18 7.42 -51.93 -0.39 -0.21 16 38 H 0.11 -0.23 7.96 -51.93 -0.41 -0.65 16 39 H 0.08 0.04 7.52 -51.93 -0.39 -0.36 16 40 H 0.14 -0.21 7.61 -52.48 -0.40 -0.61 16 41 H 0.14 -0.46 8.06 -52.49 -0.42 -0.89 16 42 H 0.13 -0.36 8.06 -52.49 -0.42 -0.78 16 43 H 0.08 -0.17 7.60 -51.93 -0.39 -0.57 16 44 H 0.08 -0.12 7.61 -51.93 -0.40 -0.51 16 45 H 0.13 -0.21 6.30 -52.49 -0.33 -0.54 16 46 H 0.13 -0.26 8.06 -52.49 -0.42 -0.69 16 47 H 0.12 -0.09 4.88 -52.48 -0.26 -0.35 16 48 H 0.12 -0.10 7.96 -51.93 -0.41 -0.52 16 49 H 0.38 -0.89 8.70 45.56 0.40 -0.49 16 50 H 0.14 0.29 8.06 -52.48 -0.42 -0.14 16 51 H 0.14 0.19 7.65 -52.49 -0.40 -0.22 16 LS Contribution 421.57 15.07 6.35 6.35 Total: 0.00 -6.90 421.57 -9.80 -16.71 By element: Atomic # 1 Polarization: -2.90 SS G_CDS: -7.09 Total: -9.99 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -1.49 Total: 0.00 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: -1.25 Total: -4.97 kcal Atomic # 14 Polarization: -1.78 SS G_CDS: -6.32 Total: -8.10 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -6.90 -9.80 -16.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4065984_4858416.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.675 kcal (2) G-P(sol) polarization free energy of solvation -6.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds