Wall clock time and date at job start Sat Mar 6 2021 10:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86301 * 109.46781 * 2 1 4 4 C 1.86297 * 109.47108 * 239.99906 * 2 1 3 5 5 C 1.86301 * 109.46918 * 119.99891 * 2 1 3 6 6 O 1.45197 * 109.47111 * 59.99968 * 5 2 1 7 7 C 1.34713 * 116.99587 * 75.00012 * 6 5 2 8 8 O 1.21470 * 120.00303 * 359.97438 * 7 6 5 9 9 C 1.47731 * 119.99818 * 179.97438 * 7 6 5 10 10 C 1.39608 * 120.14985 * 359.97438 * 9 7 6 11 11 C 1.37966 * 119.84995 * 179.97438 * 10 9 7 12 12 C 1.38342 * 120.14663 * 0.27858 * 11 10 9 13 13 C 1.38395 * 120.30516 * 359.44607 * 12 11 10 14 14 C 1.50697 * 119.92624 * 180.25590 * 13 12 11 15 15 O 1.42896 * 109.47112 * 270.29492 * 14 13 12 16 16 C 1.35903 * 117.00199 * 180.02562 * 15 14 13 17 17 C 1.38719 * 120.05328 * 359.72437 * 16 15 14 18 18 C 1.38164 * 119.94006 * 179.72434 * 17 16 15 19 19 C 1.38241 * 120.05671 * 0.57364 * 18 17 16 20 20 C 1.38291 * 120.11243 * 359.68001 * 19 18 17 21 21 C 1.50700 * 119.97063 * 180.02562 * 20 19 18 22 22 O 1.42901 * 109.46912 * 120.02167 * 21 20 19 23 23 Si 1.86306 * 109.47160 * 0.02562 * 21 20 19 24 24 H 1.48504 * 109.46847 * 60.00405 * 23 21 20 25 25 H 1.48497 * 109.46706 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47235 * 300.00154 * 23 21 20 27 27 C 1.38111 * 120.05347 * 0.04310 * 20 19 18 28 28 C 1.37925 * 120.14718 * 0.55104 * 13 12 11 29 29 H 1.09000 * 109.47310 * 300.00356 * 1 2 3 30 30 H 1.09004 * 109.46929 * 60.00363 * 1 2 3 31 31 H 1.09001 * 109.46890 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47010 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47265 * 299.99398 * 3 2 1 34 34 H 1.09003 * 109.47445 * 60.00291 * 3 2 1 35 35 H 1.08993 * 109.47117 * 299.99963 * 4 2 1 36 36 H 1.09005 * 109.46981 * 60.00295 * 4 2 1 37 37 H 1.08998 * 109.46917 * 179.97438 * 4 2 1 38 38 H 1.09000 * 109.46928 * 299.99987 * 5 2 1 39 39 H 1.08998 * 109.46760 * 180.02562 * 5 2 1 40 40 H 1.08008 * 120.07365 * 359.95508 * 10 9 7 41 41 H 1.08002 * 119.92372 * 179.97438 * 11 10 9 42 42 H 1.08000 * 119.84804 * 179.71722 * 12 11 10 43 43 H 1.09001 * 109.47145 * 30.29232 * 14 13 12 44 44 H 1.09000 * 109.47321 * 150.29353 * 14 13 12 45 45 H 1.07995 * 120.02603 * 359.97438 * 17 16 15 46 46 H 1.07999 * 119.96677 * 180.27536 * 18 17 16 47 47 H 1.08003 * 119.94139 * 179.70178 * 19 18 17 48 48 H 1.08998 * 109.47378 * 240.02332 * 21 20 19 49 49 H 0.96696 * 113.99793 * 299.99835 * 22 21 20 50 50 H 1.08007 * 120.02826 * 180.02562 * 27 20 19 51 51 H 1.07997 * 120.07375 * 179.75027 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4840 -0.8782 1.5212 6 8 2.0000 -2.2471 1.5212 7 6 2.5964 -3.1066 0.6724 8 8 3.4958 -2.7229 -0.0482 9 6 2.1565 -4.5159 0.6182 10 6 1.1235 -4.9604 1.4454 11 6 0.7174 -6.2777 1.3892 12 6 1.3352 -7.1588 0.5198 13 6 2.3560 -6.7235 -0.3071 14 6 3.0192 -7.6893 -1.2550 15 8 4.1273 -8.3121 -0.6024 16 6 4.8394 -9.2171 -1.3242 17 6 4.4753 -9.5040 -2.6316 18 6 5.2043 -10.4202 -3.3652 19 6 6.2884 -11.0596 -2.7933 20 6 6.6501 -10.7793 -1.4884 21 6 7.8328 -11.4777 -0.8684 22 8 8.8064 -10.5082 -0.4756 23 14 8.5852 -12.6456 -2.1098 24 1 9.0313 -11.8805 -3.3019 25 1 9.7510 -13.3333 -1.4989 26 1 7.5736 -13.6530 -2.5181 27 6 5.9282 -9.8600 -0.7528 28 6 2.7719 -5.4093 -0.2612 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.5740 1.7565 0.0005 33 1 2.1207 2.2703 -0.8900 34 1 2.1206 2.2704 0.8900 35 1 2.1207 -1.9058 -1.5211 36 1 2.1207 -0.3643 -2.4111 37 1 3.5740 -0.8778 -1.5213 38 1 2.1206 -0.3643 2.4111 39 1 3.5740 -0.8778 1.5214 40 1 0.6436 -4.2746 2.1280 41 1 -0.0814 -6.6230 2.0289 42 1 1.0164 -8.1900 0.4830 43 1 2.3013 -8.4512 -1.5586 44 1 3.3714 -7.1508 -2.1348 45 1 3.6254 -9.0086 -3.0770 46 1 4.9240 -10.6406 -4.3846 47 1 6.8540 -11.7791 -3.3669 48 1 7.5055 -12.0392 0.0067 49 1 9.1429 -9.9707 -1.2056 50 1 6.2113 -9.6410 0.2663 51 1 3.5714 -5.0719 -0.9041 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4065984_4858416.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 10:16:10 Heat of formation + Delta-G solvation = -123.437813 kcal Electronic energy + Delta-G solvation = -30616.904085 eV Core-core repulsion = 26378.072992 eV Total energy + Delta-G solvation = -4238.831093 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 374.155 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.76497 -41.31763 -40.08000 -38.96468 -37.44919 -37.25644 -33.66971 -32.46986 -32.40128 -31.10114 -29.68829 -28.48555 -28.37606 -28.27395 -27.64622 -26.61264 -25.05463 -23.69541 -23.17440 -22.24645 -21.53804 -19.23274 -18.92122 -18.25343 -17.98535 -17.47702 -17.28023 -17.19928 -16.96687 -16.92878 -16.18593 -15.86553 -15.61174 -15.33176 -14.98257 -14.73890 -14.71403 -14.62832 -14.37994 -14.16507 -14.00741 -13.87639 -13.82840 -13.58563 -13.49271 -13.39791 -13.25542 -13.08529 -13.01379 -12.95306 -12.79491 -12.62936 -12.52877 -12.20762 -12.15405 -11.98317 -11.92849 -11.60867 -11.54236 -10.87054 -10.78932 -10.50223 -10.44029 -10.13069 -10.08043 -9.92114 -9.27901 -0.42853 0.09661 0.19316 0.37391 1.15921 1.34077 1.47413 1.48331 1.53097 1.58086 1.87416 1.90311 2.03403 2.19572 2.54651 2.65741 2.78857 3.44423 3.55760 3.63578 3.67795 3.73267 3.83608 3.95484 4.03958 4.08267 4.16724 4.19626 4.22397 4.25188 4.42821 4.45333 4.56389 4.66446 4.67276 4.69255 4.72504 4.76182 4.79442 4.80539 4.81489 4.83651 4.86088 4.97418 5.14645 5.16860 5.23801 5.30742 5.35235 5.35358 5.42057 5.51071 5.59199 5.61397 5.68678 5.72128 6.35741 6.65030 6.66801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.451 4.451 2 Si 1.059 2.941 3 C -0.451 4.451 4 C -0.456 4.456 5 C -0.258 4.258 6 O -0.333 6.333 7 C 0.490 3.510 8 O -0.515 6.515 9 C -0.148 4.148 10 C -0.054 4.054 11 C -0.130 4.130 12 C -0.058 4.058 13 C -0.115 4.115 14 C 0.099 3.901 15 O -0.326 6.326 16 C 0.118 3.882 17 C -0.208 4.208 18 C -0.074 4.074 19 C -0.173 4.173 20 C -0.084 4.084 21 C -0.086 4.086 22 O -0.554 6.554 23 Si 0.993 3.007 24 H -0.251 1.251 25 H -0.276 1.276 26 H -0.253 1.253 27 C -0.142 4.142 28 C -0.046 4.046 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.134 0.866 39 H 0.072 0.928 40 H 0.155 0.845 41 H 0.165 0.835 42 H 0.155 0.845 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.150 0.850 46 H 0.153 0.847 47 H 0.134 0.866 48 H 0.123 0.877 49 H 0.389 0.611 50 H 0.124 0.876 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.162 -0.707 -1.146 5.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.251 2.749 3 C -0.559 4.559 4 C -0.561 4.561 5 C -0.375 4.375 6 O -0.248 6.248 7 C 0.336 3.664 8 O -0.406 6.406 9 C -0.149 4.149 10 C -0.072 4.072 11 C -0.148 4.148 12 C -0.076 4.076 13 C -0.116 4.116 14 C 0.025 3.975 15 O -0.241 6.241 16 C 0.073 3.927 17 C -0.226 4.226 18 C -0.092 4.092 19 C -0.190 4.190 20 C -0.084 4.084 21 C -0.196 4.196 22 O -0.361 6.361 23 Si 0.816 3.184 24 H -0.174 1.174 25 H -0.202 1.202 26 H -0.177 1.177 27 C -0.161 4.161 28 C -0.064 4.064 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.152 0.848 39 H 0.091 0.909 40 H 0.173 0.827 41 H 0.182 0.818 42 H 0.173 0.827 43 H 0.116 0.884 44 H 0.099 0.901 45 H 0.167 0.833 46 H 0.171 0.829 47 H 0.152 0.848 48 H 0.141 0.859 49 H 0.238 0.762 50 H 0.142 0.858 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.602 -1.336 -1.131 4.923 hybrid contribution 0.285 0.742 -0.308 0.852 sum -4.317 -0.594 -1.440 4.589 Atomic orbital electron populations 1.26115 1.20041 1.04530 1.05265 0.78811 0.66906 0.66081 0.63140 1.26074 1.06398 1.17919 1.05545 1.26546 1.06041 1.07017 1.16536 1.28748 1.05128 0.83206 1.20437 1.86440 1.58800 1.21952 1.57643 1.21436 0.80137 0.87314 0.77500 1.90827 1.29829 1.78547 1.41363 1.19182 1.02302 0.90074 1.03314 1.21826 0.92876 0.97215 0.95325 1.21555 1.01203 0.92444 0.99565 1.21731 0.92829 1.01223 0.91774 1.19497 0.98603 0.92959 1.00499 1.21741 0.87111 0.94778 0.93844 1.86133 1.42735 1.53558 1.41665 1.19184 0.92179 0.90184 0.91167 1.21562 1.03998 1.03375 0.93667 1.21236 0.93460 0.93881 1.00633 1.21187 1.00067 1.02855 0.94929 1.20228 0.97194 0.96834 0.94157 1.25186 0.88716 0.97093 1.08614 1.86489 1.57795 1.52413 1.39401 0.85073 0.78956 0.77711 0.76646 1.17434 1.20195 1.17659 1.20313 0.95331 0.99202 1.01252 1.21189 0.96956 0.92586 0.95662 0.89999 0.90672 0.91660 0.91259 0.90387 0.89886 0.93158 0.91532 0.92117 0.84789 0.90934 0.82738 0.81767 0.82695 0.88398 0.90094 0.83275 0.82900 0.84804 0.85916 0.76222 0.85756 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.03 8.65 113.37 0.98 2.01 16 2 Si 1.06 -2.32 12.12 68.60 0.83 -1.48 16 3 C -0.45 1.33 8.65 113.37 0.98 2.31 16 4 C -0.46 -2.03 7.10 113.37 0.80 -1.23 16 5 C -0.26 -0.08 5.40 113.37 0.61 0.53 16 6 O -0.33 -1.42 9.17 -56.23 -0.52 -1.94 16 7 C 0.49 3.70 6.68 70.33 0.47 4.17 16 8 O -0.51 -5.99 12.05 19.93 0.24 -5.75 16 9 C -0.15 -0.72 5.87 -20.10 -0.12 -0.83 16 10 C -0.05 0.00 9.62 22.54 0.22 0.22 16 11 C -0.13 0.43 10.03 22.23 0.22 0.66 16 12 C -0.06 0.14 9.69 22.33 0.22 0.36 16 13 C -0.12 -0.12 5.50 -19.90 -0.11 -0.23 16 14 C 0.10 -0.07 4.86 71.23 0.35 0.28 16 15 O -0.33 -1.72 10.12 -92.46 -0.94 -2.65 16 16 C 0.12 0.55 6.69 22.51 0.15 0.70 16 17 C -0.21 -0.10 9.04 22.37 0.20 0.10 16 18 C -0.07 0.05 10.04 22.25 0.22 0.27 16 19 C -0.17 -0.12 8.67 22.28 0.19 0.08 16 20 C -0.08 -0.22 5.39 -19.88 -0.11 -0.33 16 21 C -0.09 -0.06 2.82 71.24 0.20 0.15 16 22 O -0.55 -1.47 12.77 -148.98 -1.90 -3.37 16 23 Si 0.99 -0.96 25.07 68.60 1.72 0.76 16 24 H -0.25 0.30 7.11 99.48 0.71 1.00 16 25 H -0.28 -0.72 7.11 99.48 0.71 -0.02 16 26 H -0.25 0.17 7.11 99.48 0.71 0.88 16 27 C -0.14 -0.78 9.55 22.36 0.21 -0.57 16 28 C -0.05 -0.21 9.24 22.54 0.21 -0.01 16 29 H 0.08 -0.33 7.96 -2.39 -0.02 -0.35 16 30 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 31 H 0.06 -0.05 7.96 -2.39 -0.02 -0.07 16 32 H 0.07 -0.14 7.96 -2.38 -0.02 -0.15 16 33 H 0.08 -0.24 7.96 -2.39 -0.02 -0.26 16 34 H 0.08 -0.41 7.96 -2.39 -0.02 -0.42 16 35 H 0.05 0.37 6.28 -2.39 -0.02 0.36 16 36 H 0.07 0.18 7.96 -2.38 -0.02 0.16 16 37 H 0.06 0.46 7.42 -2.39 -0.02 0.44 16 38 H 0.13 -0.65 7.96 -2.39 -0.02 -0.67 16 39 H 0.07 0.17 7.52 -2.39 -0.02 0.15 16 40 H 0.15 -0.51 7.61 -2.91 -0.02 -0.53 16 41 H 0.16 -1.48 8.06 -2.91 -0.02 -1.50 16 42 H 0.16 -1.11 8.06 -2.91 -0.02 -1.13 16 43 H 0.10 -0.53 7.60 -2.39 -0.02 -0.54 16 44 H 0.08 -0.18 7.61 -2.39 -0.02 -0.20 16 45 H 0.15 -0.62 6.30 -2.91 -0.02 -0.64 16 46 H 0.15 -0.90 8.06 -2.91 -0.02 -0.93 16 47 H 0.13 -0.32 4.88 -2.91 -0.01 -0.34 16 48 H 0.12 -0.08 7.96 -2.39 -0.02 -0.10 16 49 H 0.39 -1.45 8.70 -74.06 -0.64 -2.09 16 50 H 0.12 0.85 8.06 -2.91 -0.02 0.82 16 51 H 0.13 0.78 7.65 -2.91 -0.02 0.76 16 Total: 0.00 -17.81 421.57 6.39 -11.41 By element: Atomic # 1 Polarization: -6.64 SS G_CDS: 1.05 Total: -5.59 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 5.91 Total: 8.62 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -3.11 Total: -13.72 kcal Atomic # 14 Polarization: -3.28 SS G_CDS: 2.55 Total: -0.72 kcal Total: -17.81 6.39 -11.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4065984_4858416.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.025 kcal (2) G-P(sol) polarization free energy of solvation -17.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds