Wall clock time and date at job start Sat Mar 6 2021 06:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36005 * 116.99931 * 2 1 4 4 C 1.39152 * 120.07399 * 179.97438 * 3 2 1 5 5 O 1.35995 * 120.07168 * 359.97438 * 4 3 2 6 6 C 1.42905 * 116.99762 * 179.72534 * 5 4 3 7 7 C 1.50699 * 109.46972 * 180.02562 * 6 5 4 8 8 O 1.20828 * 120.00000 * 0.02562 * 7 6 5 9 9 O 1.34231 * 120.00154 * 180.02562 * 7 6 5 10 10 C 1.45196 * 117.00262 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47382 * 179.97438 * 10 9 7 12 12 H 1.08999 * 112.84791 * 45.32720 * 11 10 9 13 13 C 1.53779 * 113.61611 * 176.52939 * 11 10 9 14 14 C 1.53781 * 87.07855 * 139.97958 * 13 11 10 15 15 H 1.09006 * 113.61915 * 89.20237 * 14 13 11 16 16 O 1.42905 * 113.61293 * 220.01462 * 14 13 11 17 17 C 1.53784 * 113.61063 * 274.13772 * 11 10 9 18 18 C 1.38564 * 119.85416 * 179.72292 * 4 3 2 19 19 C 1.38240 * 119.99685 * 0.27898 * 18 4 3 20 20 N 1.48010 * 119.92644 * 179.97438 * 19 18 4 21 21 O 1.21803 * 119.99567 * 359.97438 * 20 19 18 22 22 O 1.21801 * 120.00061 * 179.97438 * 20 19 18 23 23 C 1.38253 * 120.14870 * 0.02562 * 19 18 4 24 24 C 1.50699 * 119.92498 * 179.97438 * 23 19 18 25 25 O 1.42900 * 109.47625 * 75.00057 * 24 23 19 26 26 Si 1.86304 * 109.46778 * 195.00121 * 24 23 19 27 27 C 1.38239 * 120.14519 * 359.97438 * 23 19 18 28 28 H 1.08996 * 109.47622 * 300.00030 * 1 2 3 29 29 H 1.08999 * 109.47026 * 60.00576 * 1 2 3 30 30 H 1.09003 * 109.46564 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47187 * 300.00191 * 6 5 4 32 32 H 1.09001 * 109.46558 * 60.00239 * 6 5 4 33 33 H 1.09003 * 109.46752 * 299.99695 * 10 9 7 34 34 H 1.09001 * 109.46943 * 59.99499 * 10 9 7 35 35 H 1.09003 * 113.61009 * 254.52395 * 13 11 10 36 36 H 1.09001 * 113.61588 * 25.43112 * 13 11 10 37 37 H 0.96700 * 114.00188 * 180.02562 * 16 14 13 38 38 H 1.09000 * 113.61629 * 334.56569 * 17 11 10 39 39 H 1.08998 * 113.61610 * 105.46966 * 17 11 10 40 40 H 1.07997 * 120.00149 * 180.25333 * 18 4 3 41 41 H 1.09000 * 109.47263 * 314.99873 * 24 23 19 42 42 H 0.96698 * 114.00193 * 179.97438 * 25 24 23 43 43 H 1.48502 * 109.99675 * 299.99568 * 26 24 23 44 44 H 1.48496 * 110.00331 * 61.31878 * 26 24 23 45 45 H 1.08000 * 120.00058 * 180.02562 * 27 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4359 1.2865 0.0005 5 8 4.1795 0.1478 0.0016 6 6 5.6003 0.3009 -0.0040 7 6 6.2519 -1.0580 -0.0025 8 8 5.5696 -2.0552 0.0023 9 8 7.5903 -1.1606 -0.0066 10 6 8.1487 -2.5009 -0.0055 11 6 9.6764 -2.4169 -0.0112 12 1 10.0628 -1.6869 0.7000 13 6 10.3690 -3.7872 0.0748 14 6 11.3835 -3.2507 -0.9488 15 1 12.2385 -2.7495 -0.4948 16 8 11.7636 -4.2118 -1.9357 17 6 10.2807 -2.2849 -1.4191 18 6 4.0602 2.5235 -0.0053 19 6 3.3028 3.6799 -0.0058 20 7 3.9713 5.0004 -0.0114 21 8 5.1875 5.0672 -0.0151 22 8 3.3053 6.0202 -0.0123 23 6 1.9223 3.6058 0.0001 24 6 1.1015 4.8696 0.0001 25 8 1.1292 5.4557 -1.3029 26 14 -0.6577 4.4675 0.4630 27 6 1.2932 2.3748 0.0059 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 5.9033 0.8478 -0.8969 32 1 5.9096 0.8535 0.8831 33 1 7.8170 -3.0319 0.8868 34 1 7.8112 -3.0358 -0.8932 35 1 10.8038 -3.9960 1.0523 36 1 9.7602 -4.6086 -0.3030 37 1 12.4018 -3.8804 -2.5822 38 1 9.6478 -2.6948 -2.2062 39 1 10.6444 -1.2828 -1.6460 40 1 5.1385 2.5842 -0.0090 41 1 1.5160 5.5720 0.7232 42 1 0.6201 6.2745 -1.3768 43 1 -1.2342 3.5107 -0.5154 44 1 -0.7035 3.8868 1.8289 45 1 0.2146 2.3196 0.0100 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4066032_11354868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:25:32 Heat of formation + Delta-G solvation = -162.244327 kcal Electronic energy + Delta-G solvation = -33599.175551 eV Core-core repulsion = 28555.166004 eV Total energy + Delta-G solvation = -5044.009546 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.133 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.47605 -42.33197 -41.76347 -40.41741 -39.95376 -39.22404 -37.89989 -37.67870 -37.14060 -36.03407 -32.93574 -32.76896 -30.97532 -29.29708 -28.86437 -27.99169 -26.78668 -25.91492 -24.32367 -23.57334 -23.18790 -22.33487 -20.89781 -20.63284 -19.93798 -19.63559 -18.95727 -18.90636 -18.76136 -18.31096 -18.29197 -18.24032 -17.94173 -17.40283 -17.26929 -16.68924 -16.60305 -16.34778 -16.01037 -15.59929 -15.38865 -15.14816 -14.84682 -14.60299 -14.24445 -14.18469 -14.03500 -13.78853 -13.56760 -13.51517 -13.03580 -12.85532 -12.75252 -12.70907 -12.59897 -12.47704 -12.45566 -12.42260 -12.26306 -12.22710 -11.92796 -11.83260 -11.70226 -11.26722 -10.77133 -10.66200 -10.24547 -9.67642 -5.00617 -1.42175 -0.61037 0.08691 0.21189 0.68015 0.82934 1.14562 1.56960 1.67169 1.74276 1.79841 1.98315 2.79184 2.98451 3.10516 3.16304 3.27969 3.33301 3.42943 3.53091 3.69909 3.71159 3.75901 3.76221 3.79942 3.87268 3.91177 3.98151 4.06554 4.08204 4.10267 4.14492 4.20487 4.31286 4.49301 4.55499 4.57806 4.61172 4.71276 4.76028 4.94008 5.05926 5.11681 5.21144 5.34209 5.35866 5.82849 6.41061 6.48523 6.83751 6.85599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.304 6.304 3 C 0.166 3.834 4 C 0.104 3.896 5 O -0.293 6.293 6 C 0.055 3.945 7 C 0.469 3.531 8 O -0.524 6.524 9 O -0.343 6.343 10 C 0.077 3.923 11 C -0.102 4.102 12 H 0.122 0.878 13 C -0.125 4.125 14 C 0.075 3.925 15 H 0.104 0.896 16 O -0.584 6.584 17 C -0.164 4.164 18 C -0.105 4.105 19 C -0.043 4.043 20 N 0.036 4.964 21 O -0.194 6.194 22 O -0.136 6.136 23 C -0.002 4.002 24 C -0.101 4.101 25 O -0.553 6.553 26 Si 0.778 3.222 27 C -0.186 4.186 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.131 0.869 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.396 0.604 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.191 0.809 41 H 0.101 0.899 42 H 0.408 0.592 43 H -0.268 1.268 44 H -0.277 1.277 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.086 2.568 1.390 3.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.216 6.216 3 C 0.118 3.882 4 C 0.057 3.943 5 O -0.206 6.206 6 C -0.020 4.020 7 C 0.312 3.688 8 O -0.412 6.412 9 O -0.259 6.259 10 C 0.004 3.996 11 C -0.121 4.121 12 H 0.140 0.860 13 C -0.163 4.163 14 C 0.016 3.984 15 H 0.122 0.878 16 O -0.392 6.392 17 C -0.201 4.201 18 C -0.124 4.124 19 C -0.127 4.127 20 N 0.552 4.448 21 O -0.401 6.401 22 O -0.358 6.358 23 C -0.003 4.003 24 C -0.209 4.209 25 O -0.364 6.364 26 Si 0.680 3.320 27 C -0.205 4.205 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.149 0.851 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.246 0.754 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.208 0.792 41 H 0.119 0.881 42 H 0.261 0.739 43 H -0.194 1.194 44 H -0.203 1.203 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.076 -0.338 1.825 3.593 hybrid contribution 1.043 0.451 -0.401 1.205 sum -2.033 0.113 1.424 2.485 Atomic orbital electron populations 1.23684 0.75199 1.07167 1.02936 1.86310 1.24295 1.24524 1.86462 1.18630 0.89425 0.86058 0.94109 1.17754 0.88142 0.85048 1.03313 1.86213 1.18143 1.27199 1.89087 1.22395 0.78205 0.92416 1.09003 1.23175 0.81596 0.91553 0.72518 1.90754 1.64936 1.40204 1.45311 1.86430 1.20882 1.35038 1.83583 1.23281 0.93732 0.79733 1.02867 1.22374 0.90561 0.99499 0.99625 0.85958 1.23107 0.96998 0.96122 1.00036 1.23449 0.95631 0.89607 0.89712 0.87785 1.86486 1.66728 1.41688 1.44301 1.23791 0.98764 1.01227 0.96352 1.20988 1.03324 0.87985 1.00140 1.20526 0.92379 0.82777 1.17009 1.43454 1.00880 1.02988 0.97505 1.94538 0.96104 1.93948 1.55462 1.94476 1.64592 1.24834 1.51874 1.19341 0.90844 0.96220 0.93932 1.25242 1.11085 0.93405 0.91214 1.86384 1.77612 1.45523 1.26833 0.93478 0.75709 0.85932 0.76930 1.21053 1.01367 0.89450 1.08633 0.90807 0.90868 0.85058 0.84067 0.83757 0.90572 0.91418 0.88906 0.90024 0.75400 0.90331 0.89588 0.79157 0.88096 0.73930 1.19423 1.20261 0.81257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.30 -1.33 10.28 -79.74 -0.82 -2.15 16 3 C 0.17 0.66 6.70 22.57 0.15 0.81 16 4 C 0.10 0.36 6.70 22.57 0.15 0.51 16 5 O -0.29 -1.43 9.45 -67.06 -0.63 -2.06 16 6 C 0.05 -0.12 5.33 71.24 0.38 0.26 16 7 C 0.47 1.88 8.03 71.24 0.57 2.46 16 8 O -0.52 -6.65 16.25 28.39 0.46 -6.19 16 9 O -0.34 -0.44 10.22 -51.43 -0.53 -0.97 16 10 C 0.08 0.06 5.29 71.98 0.38 0.44 16 11 C -0.10 0.32 4.01 -10.27 -0.04 0.27 16 12 H 0.12 -0.69 8.14 -2.39 -0.02 -0.71 16 13 C -0.13 0.25 7.48 31.12 0.23 0.49 16 14 C 0.07 -0.19 5.21 31.18 0.16 -0.03 16 15 H 0.10 -0.66 8.14 -2.38 -0.02 -0.67 16 16 O -0.58 -0.57 13.67 -148.98 -2.04 -2.60 16 17 C -0.16 0.44 7.48 31.18 0.23 0.67 16 18 C -0.10 -0.16 8.54 22.35 0.19 0.03 16 19 C -0.04 -0.23 6.85 36.38 0.25 0.02 16 20 N 0.04 0.32 4.45 -46.46 -0.21 0.11 16 21 O -0.19 -2.00 18.44 18.88 0.35 -1.65 16 22 O -0.14 -1.26 14.62 25.10 0.37 -0.89 16 23 C 0.00 -0.01 5.29 -19.86 -0.11 -0.11 16 24 C -0.10 0.05 1.73 71.24 0.12 0.18 16 25 O -0.55 -0.06 11.77 -129.62 -1.53 -1.58 16 26 Si 0.78 -4.44 30.19 68.60 2.07 -2.37 16 27 C -0.19 -0.35 7.65 22.35 0.17 -0.18 16 28 H 0.07 -0.47 7.65 -2.39 -0.02 -0.49 16 29 H 0.07 -0.41 7.68 -2.39 -0.02 -0.43 16 30 H 0.13 -0.94 8.14 -2.39 -0.02 -0.96 16 31 H 0.14 -1.12 7.66 -2.39 -0.02 -1.14 16 32 H 0.15 -1.24 7.66 -2.39 -0.02 -1.25 16 33 H 0.08 0.08 8.13 -2.39 -0.02 0.06 16 34 H 0.07 0.18 7.87 -2.39 -0.02 0.16 16 35 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 36 H 0.08 0.06 8.10 -2.39 -0.02 0.04 16 37 H 0.40 -2.84 9.12 -74.06 -0.68 -3.51 16 38 H 0.08 0.00 7.92 -2.39 -0.02 -0.01 16 39 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 40 H 0.19 -0.73 5.85 -2.91 -0.02 -0.75 16 41 H 0.10 -0.09 6.07 -2.39 -0.01 -0.10 16 42 H 0.41 -4.05 8.74 -74.06 -0.65 -4.70 16 43 H -0.27 0.64 6.74 99.48 0.67 1.31 16 44 H -0.28 0.36 7.11 99.48 0.71 1.07 16 45 H 0.17 -0.26 3.13 -2.91 -0.01 -0.27 16 Total: 0.00 -27.87 385.60 1.23 -26.64 By element: Atomic # 1 Polarization: -12.95 SS G_CDS: -0.23 Total: -13.19 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 3.96 Total: 6.90 kcal Atomic # 7 Polarization: 0.32 SS G_CDS: -0.21 Total: 0.11 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -4.37 Total: -18.10 kcal Atomic # 14 Polarization: -4.44 SS G_CDS: 2.07 Total: -2.37 kcal Total: -27.87 1.23 -26.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4066032_11354868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.602 kcal (2) G-P(sol) polarization free energy of solvation -27.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds