Wall clock time and date at job start Sat Mar 6 2021 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35995 * 116.99898 * 2 1 4 4 C 1.39154 * 120.07374 * 180.02562 * 3 2 1 5 5 O 1.35993 * 120.07187 * 0.02562 * 4 3 2 6 6 C 1.42900 * 116.99644 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.46721 * 179.97438 * 6 5 4 8 8 O 1.20819 * 120.00302 * 0.02562 * 7 6 5 9 9 O 1.34230 * 119.99907 * 179.97438 * 7 6 5 10 10 C 1.45195 * 117.00310 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47529 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47304 * 305.00637 * 11 10 9 13 13 C 1.53001 * 109.46881 * 65.00421 * 11 10 9 14 14 C 1.53000 * 109.47098 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46839 * 299.99275 * 14 13 11 16 16 H 1.09005 * 109.47349 * 300.00376 * 15 14 13 17 17 O 1.42898 * 109.47190 * 179.97438 * 15 14 13 18 18 C 1.53001 * 109.46684 * 60.00471 * 15 14 13 19 19 C 1.53000 * 109.47098 * 299.99370 * 18 15 14 20 20 C 1.38566 * 119.85128 * 179.97438 * 4 3 2 21 21 C 1.38236 * 120.00196 * 0.02562 * 20 4 3 22 22 N 1.48004 * 119.92915 * 180.02562 * 21 20 4 23 23 O 1.21800 * 119.99783 * 359.97438 * 22 21 20 24 24 O 1.21800 * 120.00594 * 180.02562 * 22 21 20 25 25 C 1.38249 * 120.14650 * 359.97438 * 21 20 4 26 26 C 1.50709 * 119.92868 * 180.02562 * 25 21 20 27 27 O 1.42902 * 109.46840 * 74.99992 * 26 25 21 28 28 Si 1.86299 * 109.47201 * 195.00355 * 26 25 21 29 29 C 1.38243 * 120.14768 * 0.02562 * 25 21 20 30 30 H 1.09007 * 109.46974 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47188 * 299.99161 * 1 2 3 32 32 H 1.08994 * 109.47700 * 59.99882 * 1 2 3 33 33 H 1.09003 * 109.47330 * 299.99734 * 6 5 4 34 34 H 1.08997 * 109.47218 * 60.00351 * 6 5 4 35 35 H 1.09006 * 109.47436 * 300.00429 * 10 9 7 36 36 H 1.09007 * 109.47084 * 59.99881 * 10 9 7 37 37 H 1.09000 * 109.46973 * 299.99714 * 13 11 10 38 38 H 1.08996 * 109.47841 * 59.99723 * 13 11 10 39 39 H 1.09001 * 109.47077 * 180.02562 * 14 13 11 40 40 H 1.08994 * 109.47924 * 59.99508 * 14 13 11 41 41 H 0.96706 * 113.99653 * 60.00241 * 17 15 14 42 42 H 1.09000 * 109.46973 * 180.02562 * 18 15 14 43 43 H 1.08996 * 109.47841 * 60.00137 * 18 15 14 44 44 H 1.09001 * 109.47786 * 300.00812 * 19 18 15 45 45 H 1.09001 * 109.47077 * 179.97438 * 19 18 15 46 46 H 1.08002 * 119.99820 * 179.97438 * 20 4 3 47 47 H 1.08997 * 109.47032 * 315.00408 * 26 25 21 48 48 H 0.96701 * 113.99912 * 60.00874 * 27 26 25 49 49 H 1.48496 * 109.99761 * 180.02562 * 28 26 25 50 50 H 1.48501 * 109.99648 * 301.31644 * 28 26 25 51 51 H 1.08000 * 119.99728 * 180.26931 * 29 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4359 1.2864 -0.0005 5 8 4.1795 0.1477 -0.0016 6 6 5.6003 0.3008 -0.0027 7 6 6.2519 -1.0580 -0.0031 8 8 5.5696 -2.0552 -0.0030 9 8 7.5902 -1.1606 -0.0046 10 6 8.1487 -2.5008 -0.0055 11 6 9.6764 -2.4169 -0.0066 12 1 10.0062 -1.8080 -0.8483 13 6 10.1530 -1.7807 1.3008 14 6 11.6807 -1.6962 1.2995 15 6 12.2692 -3.1028 1.1726 16 1 11.9396 -3.7119 2.0144 17 8 13.6960 -3.0238 1.1708 18 6 11.7925 -3.7389 -0.1347 19 6 10.2649 -3.8235 -0.1335 20 6 4.0602 2.5235 -0.0011 21 6 3.3028 3.6799 -0.0005 22 7 3.9713 5.0004 -0.0017 23 8 5.1874 5.0673 -0.0026 24 8 3.3053 6.0202 -0.0007 25 6 1.9223 3.6057 0.0000 26 6 1.1014 4.8696 0.0000 27 8 1.1339 5.4587 -1.3016 28 14 -0.6595 4.4664 0.4555 29 6 1.2931 2.3748 0.0005 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 5.9058 0.8510 -0.8927 34 1 5.9072 0.8502 0.8873 35 1 7.8151 -3.0341 0.8847 36 1 7.8131 -3.0337 -0.8953 37 1 9.7341 -0.7785 1.3910 38 1 9.8232 -2.3895 2.1426 39 1 12.0203 -1.2434 2.2311 40 1 12.0103 -1.0872 0.4578 41 1 14.0690 -2.6296 1.9712 42 1 12.2114 -4.7412 -0.2250 43 1 12.1221 -3.1300 -0.9765 44 1 9.9353 -4.4325 0.7083 45 1 9.9253 -4.2763 -1.0650 46 1 5.1385 2.5842 -0.0011 47 1 1.5132 5.5703 0.7263 48 1 0.7817 4.8897 -1.9997 49 1 -1.4795 5.7045 0.4584 50 1 -1.2221 3.4875 -0.5091 51 1 0.2146 2.3197 -0.0034 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4066032_16737258.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:19:25 Heat of formation + Delta-G solvation = -204.060949 kcal Electronic energy + Delta-G solvation = -37860.411484 eV Core-core repulsion = 32503.513395 eV Total energy + Delta-G solvation = -5356.898089 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.164 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.39596 -42.22543 -41.67615 -40.22884 -39.81967 -39.28854 -37.94388 -37.68515 -37.24127 -36.59811 -32.78138 -32.66134 -32.06393 -31.82787 -30.25150 -28.84539 -27.93858 -26.68130 -25.79672 -24.08749 -23.79236 -23.26943 -22.51845 -22.05994 -20.88752 -20.84310 -19.85293 -19.56485 -19.04736 -18.67063 -18.42207 -18.26032 -18.21276 -18.14378 -17.46297 -17.30402 -17.15470 -16.64814 -16.51258 -16.31981 -16.19989 -15.64263 -15.50206 -15.28980 -15.02220 -14.84970 -14.55443 -14.41647 -14.20859 -13.95081 -13.77047 -13.64736 -13.45008 -13.22080 -13.13528 -13.06816 -12.70726 -12.60677 -12.54628 -12.49045 -12.40639 -12.24987 -12.14570 -12.11822 -11.98292 -11.75168 -11.71128 -11.65809 -11.52538 -11.10550 -10.71221 -10.65467 -10.50914 -9.54783 -5.00309 -1.36621 -0.47096 0.15805 0.30613 0.77552 0.90399 1.13168 1.46180 1.84371 1.86067 1.93728 2.09388 2.95219 3.11975 3.18983 3.22535 3.34442 3.41050 3.45571 3.61059 3.71526 3.74219 3.82235 3.82728 3.90915 4.01901 4.03139 4.08338 4.14108 4.23824 4.25007 4.31904 4.33479 4.34052 4.36913 4.46666 4.47750 4.55084 4.58784 4.69960 4.75898 4.79944 4.94402 5.03901 5.06915 5.14586 5.16699 5.21094 5.26365 5.31231 5.43856 5.48326 5.99666 6.42891 6.48066 6.48747 6.85895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.306 6.306 3 C 0.173 3.827 4 C 0.103 3.897 5 O -0.292 6.292 6 C 0.055 3.945 7 C 0.469 3.531 8 O -0.522 6.522 9 O -0.345 6.345 10 C 0.071 3.929 11 C -0.083 4.083 12 H 0.085 0.915 13 C -0.111 4.111 14 C -0.146 4.146 15 C 0.099 3.901 16 H 0.061 0.939 17 O -0.591 6.591 18 C -0.113 4.113 19 C -0.106 4.106 20 C -0.107 4.107 21 C -0.043 4.043 22 N 0.035 4.965 23 O -0.190 6.190 24 O -0.159 6.159 25 C -0.031 4.031 26 C -0.104 4.104 27 O -0.529 6.529 28 Si 0.776 3.224 29 C -0.171 4.171 30 H 0.123 0.877 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.393 0.607 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.184 0.816 47 H 0.129 0.871 48 H 0.384 0.616 49 H -0.296 1.296 50 H -0.248 1.248 51 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.599 -4.162 3.183 6.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 O -0.217 6.217 3 C 0.124 3.876 4 C 0.056 3.944 5 O -0.206 6.206 6 C -0.020 4.020 7 C 0.312 3.688 8 O -0.410 6.410 9 O -0.262 6.262 10 C -0.002 4.002 11 C -0.101 4.101 12 H 0.103 0.897 13 C -0.148 4.148 14 C -0.184 4.184 15 C 0.041 3.959 16 H 0.079 0.921 17 O -0.400 6.400 18 C -0.150 4.150 19 C -0.143 4.143 20 C -0.127 4.127 21 C -0.127 4.127 22 N 0.548 4.452 23 O -0.400 6.400 24 O -0.375 6.375 25 C -0.034 4.034 26 C -0.210 4.210 27 O -0.336 6.336 28 Si 0.677 3.323 29 C -0.190 4.190 30 H 0.141 0.859 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.243 0.757 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.201 0.799 47 H 0.146 0.854 48 H 0.232 0.768 49 H -0.223 1.223 50 H -0.174 1.174 51 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -4.664 -5.321 2.671 7.563 hybrid contribution 0.767 0.845 -0.758 1.370 sum -3.897 -4.476 1.913 6.235 Atomic orbital electron populations 1.23762 0.74861 1.07026 1.03802 1.86322 1.24629 1.24548 1.86237 1.18631 0.89024 0.86345 0.93582 1.17829 0.88518 0.84728 1.03314 1.86215 1.17886 1.27383 1.89113 1.22352 0.78497 0.92399 1.08750 1.23147 0.81542 0.91553 0.72560 1.90749 1.64882 1.40117 1.45243 1.86421 1.20976 1.35157 1.83605 1.23343 0.93958 0.79695 1.03227 1.21236 0.90547 0.98218 1.00111 0.89652 1.21529 0.94769 1.01843 0.96682 1.22214 0.96020 0.97238 1.02955 1.21932 0.80088 0.95721 0.98195 0.92084 1.86483 1.20925 1.85717 1.46828 1.21452 0.95281 1.01360 0.96934 1.21446 0.93910 0.95270 1.03720 1.20922 1.03085 0.88186 1.00509 1.20523 0.92679 0.81962 1.17541 1.43706 1.00832 1.03399 0.97221 1.94521 0.96489 1.94117 1.54832 1.94575 1.64425 1.25375 1.53119 1.20114 0.90948 0.97434 0.94855 1.25805 1.11778 0.93798 0.89649 1.86779 1.85368 1.45031 1.16439 0.94250 0.70053 0.79789 0.88219 1.21227 1.02271 0.88332 1.07180 0.85871 0.89187 0.90687 0.84375 0.84036 0.90639 0.90750 0.90699 0.91204 0.90574 0.91735 0.75723 0.91314 0.91739 0.90526 0.90100 0.79898 0.85377 0.76779 1.22293 1.17376 0.79489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.81 113.37 1.11 1.12 16 2 O -0.31 0.38 10.28 -79.63 -0.82 -0.44 16 3 C 0.17 -0.35 6.70 22.57 0.15 -0.20 16 4 C 0.10 -0.08 6.70 22.57 0.15 0.07 16 5 O -0.29 -0.47 9.45 -67.03 -0.63 -1.10 16 6 C 0.06 -0.25 5.33 71.24 0.38 0.13 16 7 C 0.47 0.76 8.03 71.24 0.57 1.34 16 8 O -0.52 -5.15 16.25 28.42 0.46 -4.69 16 9 O -0.34 0.26 9.76 -51.42 -0.50 -0.24 16 10 C 0.07 -0.13 4.84 71.98 0.35 0.22 16 11 C -0.08 0.33 2.43 -10.79 -0.03 0.30 16 12 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 13 C -0.11 0.48 5.10 30.59 0.16 0.63 16 14 C -0.15 0.51 5.55 30.60 0.17 0.68 16 15 C 0.10 -0.15 3.47 30.60 0.11 -0.05 16 16 H 0.06 -0.18 8.14 -2.38 -0.02 -0.20 16 17 O -0.59 -0.89 13.32 -148.98 -1.98 -2.87 16 18 C -0.11 0.15 5.57 30.59 0.17 0.32 16 19 C -0.11 0.47 5.21 30.60 0.16 0.63 16 20 C -0.11 0.17 8.54 22.35 0.19 0.36 16 21 C -0.04 -0.10 6.84 36.38 0.25 0.15 16 22 N 0.04 0.30 4.45 -46.47 -0.21 0.10 16 23 O -0.19 -1.96 18.44 18.89 0.35 -1.62 16 24 O -0.16 -1.87 14.62 25.10 0.37 -1.50 16 25 C -0.03 0.05 5.26 -19.86 -0.10 -0.06 16 26 C -0.10 0.08 1.74 71.24 0.12 0.21 16 27 O -0.53 -1.45 11.80 -129.63 -1.53 -2.97 16 28 Si 0.78 -4.91 30.24 68.60 2.07 -2.83 16 29 C -0.17 0.96 7.64 22.35 0.17 1.13 16 30 H 0.12 -1.44 8.14 -2.38 -0.02 -1.46 16 31 H 0.09 -1.28 7.67 -2.38 -0.02 -1.30 16 32 H 0.07 -0.92 7.66 -2.39 -0.02 -0.94 16 33 H 0.14 -1.34 7.66 -2.39 -0.02 -1.36 16 34 H 0.14 -1.46 7.66 -2.39 -0.02 -1.48 16 35 H 0.08 -0.12 8.13 -2.38 -0.02 -0.14 16 36 H 0.07 -0.09 8.13 -2.38 -0.02 -0.11 16 37 H 0.07 -0.30 7.82 -2.39 -0.02 -0.31 16 38 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 40 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.39 -2.46 9.08 -74.05 -0.67 -3.13 16 42 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 45 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 46 H 0.18 -1.03 5.85 -2.91 -0.02 -1.04 16 47 H 0.13 0.23 6.07 -2.39 -0.01 0.21 16 48 H 0.38 -1.89 8.70 -74.06 -0.64 -2.54 16 49 H -0.30 -0.70 7.11 99.48 0.71 0.01 16 50 H -0.25 1.87 6.68 99.48 0.66 2.53 16 51 H 0.19 -2.07 3.09 -2.91 -0.01 -2.08 16 Total: 0.00 -27.93 420.14 1.35 -26.58 By element: Atomic # 1 Polarization: -15.11 SS G_CDS: -0.31 Total: -15.42 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 4.08 Total: 7.00 kcal Atomic # 7 Polarization: 0.30 SS G_CDS: -0.21 Total: 0.10 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -4.29 Total: -15.43 kcal Atomic # 14 Polarization: -4.91 SS G_CDS: 2.07 Total: -2.83 kcal Total: -27.93 1.35 -26.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4066032_16737258.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.476 kcal (2) G-P(sol) polarization free energy of solvation -27.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds