Wall clock time and date at job start Sat Mar 6 2021 06:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35993 * 117.00079 * 2 1 4 4 C 1.39163 * 120.07544 * 179.97438 * 3 2 1 5 5 O 1.35992 * 120.07201 * 0.02562 * 4 3 2 6 6 C 1.42896 * 117.00049 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47074 * 180.02562 * 6 5 4 8 8 O 1.20828 * 120.00121 * 359.97438 * 7 6 5 9 9 O 1.34231 * 119.99632 * 179.72256 * 7 6 5 10 10 C 1.45198 * 116.99721 * 180.27364 * 9 7 6 11 11 C 1.53003 * 109.47219 * 180.02562 * 10 9 7 12 12 H 1.09001 * 112.84872 * 316.19921 * 11 10 9 13 13 C 1.53778 * 113.61535 * 87.50259 * 11 10 9 14 14 C 1.53782 * 87.08144 * 89.11709 * 13 11 10 15 15 O 1.42901 * 113.61731 * 270.88630 * 14 13 11 16 16 C 1.42898 * 114.00214 * 162.82158 * 15 14 13 17 17 C 1.53000 * 113.69020 * 139.99338 * 14 13 11 18 18 F 1.39897 * 109.47361 * 327.01571 * 17 14 13 19 19 F 1.39900 * 109.47024 * 87.02055 * 17 14 13 20 20 F 1.39908 * 109.47001 * 207.01942 * 17 14 13 21 21 C 1.53777 * 113.61519 * 185.00190 * 11 10 9 22 22 C 1.38566 * 119.85244 * 180.27750 * 4 3 2 23 23 C 1.38238 * 119.99878 * 359.49465 * 22 4 3 24 24 N 1.48005 * 119.92740 * 180.25128 * 23 22 4 25 25 O 1.21807 * 119.99503 * 0.26083 * 24 23 22 26 26 O 1.21801 * 120.00443 * 180.25389 * 24 23 22 27 27 C 1.38251 * 120.14939 * 0.50841 * 23 22 4 28 28 C 1.50703 * 119.92886 * 179.76565 * 27 23 22 29 29 O 1.42897 * 109.46831 * 74.97904 * 28 27 23 30 30 Si 1.86307 * 109.47014 * 194.97983 * 28 27 23 31 31 C 1.38248 * 120.14642 * 359.74915 * 27 23 22 32 32 H 1.09001 * 109.47223 * 59.99897 * 1 2 3 33 33 H 1.09008 * 109.46887 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47049 * 299.99663 * 1 2 3 35 35 H 1.09000 * 109.47274 * 59.99985 * 6 5 4 36 36 H 1.09003 * 109.46997 * 299.99695 * 6 5 4 37 37 H 1.09000 * 109.47874 * 300.00373 * 10 9 7 38 38 H 1.09005 * 109.47425 * 60.00586 * 10 9 7 39 39 H 1.08996 * 113.61679 * 203.66360 * 13 11 10 40 40 H 1.08999 * 113.61086 * 334.57194 * 13 11 10 41 41 H 1.08994 * 109.47101 * 303.09351 * 16 15 14 42 42 H 1.09003 * 109.47366 * 63.09341 * 16 15 14 43 43 H 1.08998 * 109.46999 * 183.09240 * 16 15 14 44 44 H 1.08997 * 113.61663 * 25.43100 * 21 11 10 45 45 H 1.08999 * 113.61683 * 156.33600 * 21 11 10 46 46 H 1.07998 * 119.99673 * 179.72948 * 22 4 3 47 47 H 1.09002 * 109.47009 * 314.97618 * 28 27 23 48 48 H 0.96697 * 113.99633 * 60.00596 * 29 28 27 49 49 H 1.48495 * 109.99543 * 179.97438 * 30 28 27 50 50 H 1.48494 * 109.99736 * 301.31801 * 30 28 27 51 51 H 1.07997 * 119.99982 * 180.02562 * 31 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2863 0.0005 5 8 4.1796 0.1477 0.0005 6 6 5.6003 0.3007 0.0005 7 6 6.2519 -1.0582 -0.0001 8 8 5.5696 -2.0553 0.0000 9 8 7.5903 -1.1607 -0.0058 10 6 8.1486 -2.5010 -0.0123 11 6 9.6763 -2.4170 -0.0175 12 1 10.0567 -1.6676 -0.7117 13 6 10.2932 -2.3265 1.3882 14 6 10.3246 -3.8640 1.3877 15 8 9.1300 -4.4612 1.8963 16 6 8.9780 -5.8400 1.5534 17 6 11.5935 -4.4532 2.0071 18 9 12.6757 -3.6051 1.7487 19 9 11.4214 -4.5817 3.3895 20 9 11.8437 -5.7116 1.4493 21 6 10.3680 -3.7843 -0.1474 22 6 4.0603 2.5234 0.0064 23 6 3.3029 3.6798 0.0011 24 7 3.9714 5.0003 0.0017 25 8 5.1876 5.0671 0.0020 26 8 3.3054 6.0201 0.0017 27 6 1.9224 3.6057 0.0005 28 6 1.1016 4.8696 0.0001 29 8 1.1355 5.4591 -1.3012 30 14 -0.6599 4.4663 0.4535 31 6 1.2931 2.3747 0.0001 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0278 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 5.9066 0.8505 0.8905 36 1 5.9065 0.8504 -0.8895 37 1 7.8177 -3.0369 0.8773 38 1 7.8105 -3.0312 -0.9026 39 1 11.2827 -1.8697 1.4023 40 1 9.6200 -1.9038 2.1340 41 1 9.0080 -5.9503 0.4695 42 1 9.7879 -6.4170 1.9999 43 1 8.0221 -6.2046 1.9294 44 1 9.7553 -4.5384 -0.6413 45 1 11.3780 -3.7260 -0.5531 46 1 5.1385 2.5840 0.0112 47 1 1.5126 5.5700 0.7272 48 1 0.7840 4.8903 -1.9998 49 1 -1.4795 5.7045 0.4572 50 1 -1.2214 3.4877 -0.5119 51 1 0.2146 2.3196 -0.0007 There are 83 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 83 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4066032_17321610.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:55:19 Heat of formation + Delta-G solvation = -292.675562 kcal Electronic energy + Delta-G solvation = -46369.648939 eV Core-core repulsion = 39600.546305 eV Total energy + Delta-G solvation = -6769.102634 eV No. of doubly occupied orbitals = 83 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 452.136 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -51.26389 -48.79559 -48.73808 -43.37913 -42.22740 -41.83543 -41.13773 -39.91734 -39.27802 -37.92446 -37.67388 -37.23451 -36.92672 -32.74651 -32.62942 -31.22395 -29.96590 -28.83674 -28.22375 -27.92556 -27.29099 -26.78162 -25.83299 -24.07950 -23.41462 -23.21206 -22.27658 -20.83661 -20.69031 -19.86612 -19.78862 -19.56243 -19.54179 -19.26910 -19.00585 -18.65205 -18.35126 -18.19246 -18.17855 -17.43007 -17.33290 -17.18423 -17.12089 -16.52893 -16.49878 -16.46828 -16.19307 -15.88295 -15.67077 -15.61155 -15.57059 -15.26645 -15.16041 -15.00299 -14.90932 -14.84814 -14.76227 -14.51619 -14.27389 -14.13189 -13.90956 -13.65185 -13.46943 -13.32386 -13.17723 -13.07327 -12.77768 -12.69380 -12.54478 -12.47827 -12.40594 -12.38710 -12.23393 -12.11052 -12.06246 -11.76435 -11.74390 -11.70002 -11.57134 -10.82944 -10.64408 -10.49446 -9.53135 -4.99593 -1.35097 -0.45546 0.17322 0.32114 0.77344 0.92981 1.13905 1.46788 1.52200 1.85698 1.87424 1.94371 2.05318 2.09822 2.55419 2.61356 2.86734 2.96590 3.10474 3.20574 3.26731 3.28280 3.39309 3.42156 3.46647 3.56269 3.74328 3.84350 3.85857 3.92780 4.03676 4.09598 4.20013 4.21274 4.24755 4.25107 4.32707 4.34660 4.37945 4.43931 4.50526 4.59849 4.60802 4.67992 4.71263 4.76344 4.76837 4.82014 4.97440 5.24517 5.27866 5.50064 5.68649 6.01104 6.43972 6.49621 6.50606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.306 6.306 3 C 0.173 3.827 4 C 0.103 3.897 5 O -0.293 6.293 6 C 0.055 3.945 7 C 0.469 3.531 8 O -0.521 6.521 9 O -0.343 6.343 10 C 0.076 3.924 11 C -0.091 4.091 12 H 0.127 0.873 13 C -0.112 4.112 14 C 0.030 3.970 15 O -0.348 6.348 16 C 0.005 3.995 17 C 0.433 3.567 18 F -0.174 7.174 19 F -0.189 7.189 20 F -0.185 7.185 21 C -0.135 4.135 22 C -0.107 4.107 23 C -0.043 4.043 24 N 0.035 4.965 25 O -0.189 6.189 26 O -0.161 6.161 27 C -0.032 4.032 28 C -0.103 4.103 29 O -0.529 6.529 30 Si 0.775 3.225 31 C -0.172 4.172 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.089 0.911 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.130 0.870 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.047 0.953 43 H 0.109 0.891 44 H 0.103 0.897 45 H 0.129 0.871 46 H 0.185 0.815 47 H 0.128 0.872 48 H 0.383 0.617 49 H -0.296 1.296 50 H -0.248 1.248 51 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.546 -3.882 -1.098 5.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.217 6.217 3 C 0.124 3.876 4 C 0.057 3.943 5 O -0.206 6.206 6 C -0.020 4.020 7 C 0.312 3.688 8 O -0.409 6.409 9 O -0.260 6.260 10 C 0.003 3.997 11 C -0.110 4.110 12 H 0.145 0.855 13 C -0.149 4.149 14 C -0.012 4.012 15 O -0.266 6.266 16 C -0.090 4.090 17 C 0.379 3.621 18 F -0.156 7.156 19 F -0.170 7.170 20 F -0.167 7.167 21 C -0.172 4.172 22 C -0.127 4.127 23 C -0.127 4.127 24 N 0.549 4.451 25 O -0.398 6.398 26 O -0.376 6.376 27 C -0.034 4.034 28 C -0.210 4.210 29 O -0.336 6.336 30 Si 0.676 3.324 31 C -0.190 4.190 32 H 0.093 0.907 33 H 0.141 0.859 34 H 0.108 0.892 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.148 0.852 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.127 0.873 44 H 0.121 0.879 45 H 0.147 0.853 46 H 0.202 0.798 47 H 0.146 0.854 48 H 0.232 0.768 49 H -0.223 1.223 50 H -0.174 1.174 51 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -4.651 -4.692 -0.897 6.667 hybrid contribution 1.086 -0.031 -0.947 1.441 sum -3.565 -4.723 -1.845 6.198 Atomic orbital electron populations 1.23757 0.74894 1.06999 1.03785 1.86321 1.24599 1.24564 1.86247 1.18636 0.89052 0.86325 0.93608 1.17827 0.88495 0.84743 1.03275 1.86213 1.17928 1.27375 1.89101 1.22358 0.78459 0.92327 1.08836 1.23146 0.81462 0.91594 0.72605 1.90754 1.64843 1.40111 1.45150 1.86387 1.21083 1.34821 1.83679 1.23160 0.92757 0.79896 1.03852 1.22053 0.91424 0.99125 0.98356 0.85486 1.23366 1.04924 0.88126 0.98479 1.24282 0.82274 0.97814 0.96871 1.88075 1.36426 1.26296 1.75805 1.23259 1.03714 0.80190 1.01837 1.21503 0.87561 0.76379 0.76704 1.93174 1.58120 1.70557 1.93738 1.93188 1.95531 1.95827 1.32459 1.93183 1.95266 1.43163 1.85065 1.23660 1.04599 0.97980 0.91000 1.20929 1.03122 0.88145 1.00467 1.20524 0.92667 0.81981 1.17527 1.43707 1.00833 1.03391 0.97214 1.94521 0.96473 1.94115 1.54739 1.94577 1.64432 1.25379 1.53215 1.20109 0.90973 0.97407 0.94899 1.25791 1.11732 0.93805 0.89654 1.86777 1.85385 1.45027 1.16409 0.94248 0.70115 0.79805 0.88262 1.21223 1.02253 0.88352 1.07210 0.90672 0.85896 0.89239 0.84088 0.84135 0.90105 0.90179 0.85178 0.88895 0.91199 0.93479 0.87302 0.87889 0.85319 0.79798 0.85397 0.76782 1.22308 1.17350 0.79535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.81 113.37 1.11 1.12 16 2 O -0.31 0.40 10.28 -79.61 -0.82 -0.42 16 3 C 0.17 -0.37 6.70 22.57 0.15 -0.22 16 4 C 0.10 -0.10 6.70 22.57 0.15 0.05 16 5 O -0.29 -0.38 9.45 -67.03 -0.63 -1.02 16 6 C 0.06 -0.27 5.33 71.24 0.38 0.11 16 7 C 0.47 0.60 8.03 71.24 0.57 1.17 16 8 O -0.52 -5.01 16.25 28.39 0.46 -4.55 16 9 O -0.34 0.52 10.22 -51.43 -0.53 -0.01 16 10 C 0.08 -0.18 5.05 71.98 0.36 0.19 16 11 C -0.09 0.61 4.21 -10.27 -0.04 0.56 16 12 H 0.13 -1.23 8.14 -2.39 -0.02 -1.25 16 13 C -0.11 0.54 6.89 31.12 0.21 0.75 16 14 C 0.03 -0.06 0.84 -10.27 -0.01 -0.07 16 15 O -0.35 -0.28 8.36 -148.98 -1.25 -1.53 16 16 C 0.01 -0.01 10.33 113.37 1.17 1.16 16 17 C 0.43 0.68 2.52 71.98 0.18 0.87 16 18 F -0.17 -0.19 15.82 44.97 0.71 0.53 16 19 F -0.19 -1.12 17.11 44.97 0.77 -0.35 16 20 F -0.19 -0.44 15.34 44.97 0.69 0.25 16 21 C -0.14 0.94 6.52 31.12 0.20 1.14 16 22 C -0.11 0.20 8.54 22.35 0.19 0.39 16 23 C -0.04 -0.09 6.84 36.38 0.25 0.16 16 24 N 0.04 0.30 4.45 -46.46 -0.21 0.09 16 25 O -0.19 -1.89 18.44 18.88 0.35 -1.54 16 26 O -0.16 -1.86 14.62 25.10 0.37 -1.50 16 27 C -0.03 0.05 5.26 -19.86 -0.10 -0.05 16 28 C -0.10 0.09 1.74 71.24 0.12 0.21 16 29 O -0.53 -1.38 11.80 -129.63 -1.53 -2.91 16 30 Si 0.77 -4.88 30.24 68.60 2.07 -2.80 16 31 C -0.17 0.97 7.65 22.35 0.17 1.14 16 32 H 0.07 -0.93 7.66 -2.39 -0.02 -0.94 16 33 H 0.12 -1.44 8.14 -2.38 -0.02 -1.46 16 34 H 0.09 -1.27 7.66 -2.39 -0.02 -1.29 16 35 H 0.14 -1.48 7.65 -2.39 -0.02 -1.50 16 36 H 0.14 -1.49 7.68 -2.39 -0.02 -1.51 16 37 H 0.08 0.08 6.11 -2.39 -0.01 0.07 16 38 H 0.08 -0.21 8.13 -2.38 -0.02 -0.23 16 39 H 0.13 -0.94 7.03 -2.39 -0.02 -0.96 16 40 H 0.09 -0.31 8.10 -2.39 -0.02 -0.33 16 41 H 0.07 -0.40 6.60 -2.39 -0.02 -0.41 16 42 H 0.05 -0.05 6.56 -2.39 -0.02 -0.06 16 43 H 0.11 -0.45 8.14 -2.39 -0.02 -0.47 16 44 H 0.10 -0.84 6.64 -2.39 -0.02 -0.86 16 45 H 0.13 -1.22 8.04 -2.39 -0.02 -1.24 16 46 H 0.18 -1.12 5.85 -2.91 -0.02 -1.14 16 47 H 0.13 0.23 6.07 -2.39 -0.01 0.21 16 48 H 0.38 -1.95 8.70 -74.06 -0.64 -2.59 16 49 H -0.30 -0.71 7.11 99.48 0.71 0.00 16 50 H -0.25 1.87 6.68 99.48 0.66 2.53 16 51 H 0.19 -2.07 3.09 -2.91 -0.01 -2.07 16 Total: 0.00 -28.52 435.14 5.96 -22.57 By element: Atomic # 1 Polarization: -15.91 SS G_CDS: 0.42 Total: -15.49 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 5.08 Total: 8.69 kcal Atomic # 7 Polarization: 0.30 SS G_CDS: -0.21 Total: 0.09 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -3.58 Total: -13.48 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 2.17 Total: 0.43 kcal Atomic # 14 Polarization: -4.88 SS G_CDS: 2.07 Total: -2.80 kcal Total: -28.52 5.96 -22.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4066032_17321610.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -270.111 kcal (2) G-P(sol) polarization free energy of solvation -28.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -298.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -292.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds