Wall clock time and date at job start Sat Mar 6 2021 06:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 O 1.42895 * 109.47503 * 239.99913 * 2 1 3 6 6 C 1.42899 * 113.99963 * 59.99687 * 5 2 1 7 7 H 1.08997 * 112.84984 * 18.80718 * 6 5 2 8 8 C 1.53789 * 113.61207 * 150.00347 * 6 5 2 9 9 C 1.53785 * 87.07963 * 139.98392 * 8 6 5 10 10 H 1.08991 * 113.61397 * 89.19955 * 9 8 6 11 11 C 1.53006 * 113.61113 * 220.02147 * 9 8 6 12 12 O 1.45203 * 109.46598 * 184.99832 * 11 9 8 13 13 C 1.34233 * 116.99318 * 179.97438 * 12 11 9 14 14 O 1.20821 * 120.00507 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99441 * 180.02562 * 13 12 11 16 16 F 1.39900 * 109.47217 * 299.99961 * 15 13 12 17 17 F 1.39904 * 109.47255 * 60.00179 * 15 13 12 18 18 O 1.42906 * 109.46846 * 179.97438 * 15 13 12 19 19 C 1.35905 * 116.99500 * 180.02562 * 18 15 13 20 20 C 1.38721 * 120.05981 * 359.72290 * 19 18 15 21 21 C 1.38149 * 119.94309 * 179.74309 * 20 19 18 22 22 C 1.38258 * 120.05537 * 0.51451 * 21 20 19 23 23 C 1.50703 * 119.94753 * 179.74454 * 22 21 20 24 24 O 1.42894 * 109.47275 * 245.02068 * 23 22 21 25 25 Si 1.86308 * 109.46673 * 5.01956 * 23 22 21 26 26 C 1.38271 * 120.11318 * 359.76013 * 22 21 20 27 27 C 1.38142 * 120.05121 * 359.97438 * 26 22 21 28 28 C 1.53783 * 87.08079 * 334.56393 * 9 8 6 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 35 35 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 36 36 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 37 37 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 38 38 H 1.08997 * 113.61447 * 254.53073 * 8 6 5 39 39 H 1.08992 * 113.61339 * 25.35090 * 8 6 5 40 40 H 1.08998 * 109.46931 * 304.99551 * 11 9 8 41 41 H 1.08995 * 109.47370 * 65.00011 * 11 9 8 42 42 H 1.08002 * 120.02862 * 0.02562 * 20 19 18 43 43 H 1.07997 * 119.97114 * 180.23270 * 21 20 19 44 44 H 1.08996 * 109.47349 * 125.01732 * 23 22 21 45 45 H 0.96710 * 113.99797 * 59.99543 * 24 23 22 46 46 H 1.48492 * 109.99955 * 58.68398 * 25 23 22 47 47 H 1.48496 * 109.99611 * 180.02562 * 25 23 22 48 48 H 1.07993 * 119.96911 * 179.97438 * 26 22 21 49 49 H 1.08005 * 120.02409 * 179.97438 * 27 26 22 50 50 H 1.08997 * 113.61910 * 270.88880 * 28 9 8 51 51 H 1.09001 * 113.61039 * 139.98184 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 2.0064 -0.6736 -1.1667 6 6 1.5847 -0.0774 -2.3950 7 1 1.2523 0.9535 -2.2729 8 6 2.5838 -0.2700 -3.5481 9 6 1.3668 -0.5005 -4.4596 10 1 0.9747 0.4142 -4.9039 11 6 1.5714 -1.6185 -5.4840 12 8 0.4218 -1.6803 -6.3688 13 6 0.4439 -2.6148 -7.3322 14 8 1.3925 -3.3563 -7.4330 15 6 -0.7140 -2.7384 -8.2887 16 9 -1.8826 -3.0188 -7.5725 17 9 -0.8722 -1.5366 -8.9873 18 8 -0.4564 -3.7964 -9.2142 19 6 -1.4091 -4.0411 -10.1521 20 6 -2.5703 -3.2826 -10.1774 21 6 -3.5347 -3.5300 -11.1352 22 6 -3.3480 -4.5395 -12.0612 23 6 -4.4043 -4.8110 -13.1013 24 8 -4.9599 -6.1101 -12.8881 25 14 -5.7506 -3.5301 -12.9680 26 6 -2.1940 -5.3007 -12.0345 27 6 -1.2243 -5.0537 -11.0822 28 6 0.6078 -0.9505 -3.2001 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 -1.7488 1.2493 36 1 3.1300 -0.7207 1.2495 37 1 1.6766 -0.2073 2.1393 38 1 3.1478 0.6302 -3.7922 39 1 3.2182 -1.1489 -3.4339 40 1 2.4691 -1.4162 -6.0681 41 1 1.6822 -2.5707 -4.9653 42 1 -2.7182 -2.4964 -9.4519 43 1 -4.4372 -2.9372 -11.1577 44 1 -3.9567 -4.7657 -14.0941 45 1 -5.3762 -6.2226 -12.0224 46 1 -5.1801 -2.1722 -13.1563 47 1 -6.7988 -3.7871 -13.9881 48 1 -2.0509 -6.0889 -12.7587 49 1 -0.3232 -5.6488 -11.0615 50 1 0.7010 -2.0162 -2.9915 51 1 -0.4235 -0.5995 -3.1632 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4146828_14598394.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:11:18 Heat of formation + Delta-G solvation = -227.476474 kcal Electronic energy + Delta-G solvation = -36053.064483 eV Core-core repulsion = 30750.404077 eV Total energy + Delta-G solvation = -5302.660405 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.167 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -51.01180 -49.00887 -42.15388 -41.42394 -40.84900 -39.47753 -38.70633 -37.77185 -37.24608 -33.92287 -32.50125 -32.11285 -30.63732 -28.96076 -28.34193 -28.23484 -26.65678 -26.38814 -24.80425 -23.82067 -23.00702 -22.57797 -20.97140 -20.87805 -20.60328 -19.93201 -19.81833 -18.89222 -18.40531 -17.81298 -17.67775 -17.51682 -16.97588 -16.69457 -16.38192 -16.28963 -16.07445 -15.91089 -15.74835 -15.60191 -15.46274 -15.44120 -15.23354 -14.94061 -14.76899 -14.57966 -14.40861 -14.29874 -14.28314 -14.12384 -13.66111 -13.48975 -13.33973 -13.26451 -13.08037 -13.02193 -12.80700 -12.65686 -12.57297 -12.49067 -12.37312 -12.18436 -12.13892 -11.97832 -11.85711 -11.69990 -11.38592 -11.20713 -10.46178 -10.36148 -10.21303 -9.64623 -5.00839 -0.11493 -0.05263 0.13279 0.14313 1.30039 1.48083 1.63078 1.80607 1.96236 2.42199 2.54596 2.78871 3.01443 3.38521 3.47086 3.48957 3.52096 3.63156 3.72466 3.73436 3.74274 3.91649 3.96608 4.02211 4.05143 4.09799 4.12966 4.15973 4.18556 4.36391 4.41168 4.50921 4.63460 4.64639 4.72036 4.76969 4.77196 4.79608 4.81038 4.85224 4.85835 4.92480 4.94998 5.01238 5.01561 5.10876 5.16434 5.30106 5.31022 5.33538 5.34237 5.38278 5.77460 5.80942 6.42278 6.76949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 C -0.177 4.177 4 C -0.140 4.140 5 O -0.381 6.381 6 C 0.059 3.941 7 H 0.105 0.895 8 C -0.123 4.123 9 C -0.104 4.104 10 H 0.121 0.879 11 C 0.073 3.927 12 O -0.326 6.326 13 C 0.468 3.532 14 O -0.458 6.458 15 C 0.470 3.530 16 F -0.160 7.160 17 F -0.162 7.162 18 O -0.301 6.301 19 C 0.083 3.917 20 C -0.192 4.192 21 C -0.075 4.075 22 C -0.139 4.139 23 C -0.068 4.068 24 O -0.553 6.553 25 Si 0.768 3.232 26 C -0.058 4.058 27 C -0.131 4.131 28 C -0.152 4.152 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.142 0.858 43 H 0.157 0.843 44 H 0.113 0.887 45 H 0.396 0.604 46 H -0.286 1.286 47 H -0.297 1.297 48 H 0.151 0.849 49 H 0.148 0.852 50 H 0.082 0.918 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.071 3.639 4.121 5.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.059 3.941 3 C -0.234 4.234 4 C -0.197 4.197 5 O -0.301 6.301 6 C 0.001 3.999 7 H 0.122 0.878 8 C -0.160 4.160 9 C -0.122 4.122 10 H 0.139 0.861 11 C 0.001 3.999 12 O -0.242 6.242 13 C 0.304 3.696 14 O -0.342 6.342 15 C 0.394 3.606 16 F -0.142 7.142 17 F -0.144 7.144 18 O -0.219 6.219 19 C 0.041 3.959 20 C -0.211 4.211 21 C -0.093 4.093 22 C -0.140 4.140 23 C -0.178 4.178 24 O -0.362 6.362 25 Si 0.674 3.326 26 C -0.076 4.076 27 C -0.149 4.149 28 C -0.189 4.189 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.160 0.840 43 H 0.174 0.826 44 H 0.130 0.870 45 H 0.246 0.754 46 H -0.213 1.213 47 H -0.225 1.225 48 H 0.169 0.831 49 H 0.166 0.834 50 H 0.101 0.899 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.689 3.737 3.200 5.202 hybrid contribution 0.404 0.062 -0.281 0.496 sum -1.285 3.799 2.920 4.961 Atomic orbital electron populations 1.22444 0.94923 1.02588 1.03155 1.21673 0.93706 0.92503 0.86175 1.22449 1.01929 0.95744 1.03282 1.21798 1.01658 1.00735 0.95542 1.88016 1.74217 1.54263 1.13579 1.23675 0.95714 0.97488 0.83031 0.87774 1.23228 0.96109 1.03887 0.92781 1.22391 0.99156 0.98364 0.92271 0.86117 1.23660 0.85207 1.01161 0.89889 1.86517 1.47478 1.50524 1.39678 1.22097 0.85999 0.80219 0.81321 1.90819 1.33016 1.41048 1.69309 1.20403 0.81325 0.76778 0.82075 1.93232 1.49771 1.92993 1.78155 1.93231 1.95503 1.46119 1.79519 1.86601 1.44358 1.49459 1.41444 1.19201 0.88439 0.97957 0.90269 1.21630 0.94264 1.02206 1.02975 1.21020 0.98745 0.96544 0.92945 1.20516 0.97449 0.97482 0.98555 1.25102 0.99851 0.94065 0.98770 1.86482 1.77194 1.30665 1.41815 0.93827 0.77008 0.74119 0.87632 1.21077 0.91364 0.98366 0.96807 1.20705 1.02099 0.97452 0.94644 1.23657 0.99619 1.01137 0.94520 0.92484 0.91856 0.90678 0.90528 0.92205 0.91621 0.92473 0.92325 0.89816 0.88904 0.89205 0.89048 0.89831 0.84043 0.82640 0.87003 0.75395 1.21254 1.22538 0.83121 0.83431 0.89931 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.42 8.38 71.98 0.60 1.02 16 2 C 0.10 -0.08 1.11 -10.79 -0.01 -0.09 16 3 C -0.18 0.53 8.38 71.98 0.60 1.13 16 4 C -0.14 0.14 8.84 71.98 0.64 0.78 16 5 O -0.38 -0.86 10.00 -148.98 -1.49 -2.35 16 6 C 0.06 -0.13 2.82 31.12 0.09 -0.04 16 7 H 0.10 -0.48 5.54 -2.39 -0.01 -0.49 16 8 C -0.12 0.48 7.47 31.12 0.23 0.72 16 9 C -0.10 0.43 4.02 -10.26 -0.04 0.39 16 10 H 0.12 -0.74 8.14 -2.39 -0.02 -0.76 16 11 C 0.07 -0.10 5.30 71.98 0.38 0.28 16 12 O -0.33 -0.67 10.22 -51.44 -0.53 -1.19 16 13 C 0.47 2.51 7.47 71.24 0.53 3.04 16 14 O -0.46 -4.45 16.25 28.41 0.46 -3.99 16 15 C 0.47 2.25 2.16 71.24 0.15 2.41 16 16 F -0.16 -0.56 15.28 44.97 0.69 0.12 16 17 F -0.16 -0.64 15.31 44.97 0.69 0.05 16 18 O -0.30 -2.14 9.60 -73.40 -0.70 -2.85 16 19 C 0.08 0.41 6.48 22.50 0.15 0.56 16 20 C -0.19 -0.44 8.26 22.36 0.18 -0.26 16 21 C -0.08 0.07 8.66 22.25 0.19 0.26 16 22 C -0.14 0.08 5.35 -19.85 -0.11 -0.03 16 23 C -0.07 0.12 2.80 71.24 0.20 0.32 16 24 O -0.55 0.61 12.83 -148.98 -1.91 -1.31 16 25 Si 0.77 -2.24 29.80 68.60 2.04 -0.20 16 26 C -0.06 -0.02 9.68 22.25 0.22 0.19 16 27 C -0.13 -0.33 9.99 22.37 0.22 -0.11 16 28 C -0.15 0.38 7.46 31.12 0.23 0.61 16 29 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.06 -0.21 7.02 -2.39 -0.02 -0.23 16 31 H 0.07 -0.31 8.14 -2.38 -0.02 -0.33 16 32 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 33 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 34 H 0.06 -0.28 6.24 -2.39 -0.01 -0.30 16 35 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 37 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 38 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 39 H 0.09 -0.22 8.10 -2.39 -0.02 -0.24 16 40 H 0.09 -0.23 8.13 -2.39 -0.02 -0.25 16 41 H 0.08 -0.08 7.84 -2.39 -0.02 -0.10 16 42 H 0.14 0.14 5.10 -2.91 -0.01 0.12 16 43 H 0.16 -0.92 4.90 -2.91 -0.01 -0.94 16 44 H 0.11 -0.12 7.96 -2.39 -0.02 -0.14 16 45 H 0.40 -3.54 8.70 -74.05 -0.64 -4.18 16 46 H -0.29 -0.58 7.11 99.48 0.71 0.13 16 47 H -0.30 -1.39 7.11 99.48 0.71 -0.68 16 48 H 0.15 -0.33 8.06 -2.91 -0.02 -0.36 16 49 H 0.15 0.06 8.06 -2.91 -0.02 0.03 16 50 H 0.08 -0.02 7.90 -2.39 -0.02 -0.04 16 51 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 Total: 0.00 -15.11 423.11 4.07 -11.04 By element: Atomic # 1 Polarization: -10.89 SS G_CDS: 0.36 Total: -10.53 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 4.47 Total: 11.19 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -4.17 Total: -11.68 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 1.38 Total: 0.17 kcal Atomic # 14 Polarization: -2.24 SS G_CDS: 2.04 Total: -0.20 kcal Total: -15.11 4.07 -11.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4146828_14598394.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -216.437 kcal (2) G-P(sol) polarization free energy of solvation -15.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds