Wall clock time and date at job start Sat Mar 6 2021 07:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86289 * 109.47570 * 2 1 4 4 C 1.50705 * 109.46728 * 120.00313 * 2 1 3 5 5 C 1.38270 * 119.93813 * 245.27253 * 4 2 1 6 6 C 1.38147 * 120.05177 * 180.24023 * 5 4 2 7 7 C 1.38736 * 119.94540 * 359.46077 * 6 5 4 8 8 O 1.35892 * 120.05957 * 180.26040 * 7 6 5 9 9 C 1.42899 * 117.00396 * 180.02562 * 8 7 6 10 10 F 1.39902 * 109.47225 * 300.00123 * 9 8 7 11 11 F 1.39908 * 109.46951 * 59.99969 * 9 8 7 12 12 C 1.50699 * 109.47210 * 179.97438 * 9 8 7 13 13 O 1.20818 * 120.00045 * 359.97438 * 12 9 8 14 14 O 1.34233 * 119.99830 * 180.02562 * 12 9 8 15 15 C 1.45197 * 116.99870 * 180.02562 * 14 12 9 16 16 C 1.53000 * 109.46905 * 179.97438 * 15 14 12 17 17 H 1.09002 * 109.47654 * 55.00034 * 16 15 14 18 18 C 1.53004 * 109.47189 * 174.99803 * 16 15 14 19 19 C 1.53000 * 109.47160 * 179.97438 * 18 16 15 20 20 C 1.52992 * 109.47348 * 300.00203 * 19 18 16 21 21 H 1.09002 * 109.47133 * 299.99836 * 20 19 18 22 22 O 1.42909 * 109.47118 * 180.02562 * 20 19 18 23 23 C 1.52996 * 109.47287 * 60.00007 * 20 19 18 24 24 C 1.53000 * 109.46950 * 299.99859 * 23 20 19 25 25 C 1.38740 * 119.88595 * 0.28283 * 7 6 5 26 26 C 1.38146 * 119.94197 * 359.97438 * 25 7 6 27 27 H 0.96703 * 113.99810 * 299.99988 * 1 2 3 28 28 H 1.08997 * 109.46673 * 239.99524 * 2 1 3 29 29 H 1.48498 * 110.00176 * 300.00193 * 3 2 1 30 30 H 1.48507 * 110.00293 * 61.31845 * 3 2 1 31 31 H 1.07995 * 119.98059 * 359.97438 * 5 4 2 32 32 H 1.08002 * 120.03108 * 179.74549 * 6 5 4 33 33 H 1.08996 * 109.47264 * 299.99179 * 15 14 12 34 34 H 1.09001 * 109.47362 * 60.00116 * 15 14 12 35 35 H 1.08997 * 109.47011 * 300.00067 * 18 16 15 36 36 H 1.09002 * 109.47065 * 59.99924 * 18 16 15 37 37 H 1.08996 * 109.46701 * 60.00594 * 19 18 16 38 38 H 1.09002 * 109.46616 * 180.02562 * 19 18 16 39 39 H 0.96700 * 114.00034 * 180.02562 * 22 20 19 40 40 H 1.09002 * 109.47173 * 59.99854 * 23 20 19 41 41 H 1.08997 * 109.47142 * 179.97438 * 23 20 19 42 42 H 1.08996 * 109.47486 * 299.99361 * 24 23 20 43 43 H 1.09009 * 109.46981 * 179.97438 * 24 23 20 44 44 H 1.07993 * 120.02463 * 180.02562 * 25 7 6 45 45 H 1.08006 * 119.96944 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7563 0.0000 4 6 1.9312 -0.7105 1.2305 5 6 2.6338 -0.0098 2.1935 6 6 3.0995 -0.6598 3.3200 7 6 2.8522 -2.0144 3.4899 8 8 3.3047 -2.6549 4.5997 9 6 3.0137 -4.0498 4.7078 10 9 1.6275 -4.2386 4.7038 11 9 3.5801 -4.7297 3.6241 12 6 3.5904 -4.5852 5.9930 13 8 4.1896 -3.8481 6.7395 14 8 3.4392 -5.8813 6.3078 15 6 4.0203 -6.3272 7.5615 16 6 3.7474 -7.8211 7.7472 17 1 4.1147 -8.3684 6.8790 18 6 4.4645 -8.3182 9.0041 19 6 4.1911 -9.8121 9.1902 20 6 2.6855 -10.0404 9.3380 21 1 2.3185 -9.4930 10.2062 22 8 2.4302 -11.4357 9.5124 23 6 1.9684 -9.5434 8.0812 24 6 2.2418 -8.0496 7.8952 25 6 2.1425 -2.7139 2.5247 26 6 1.6835 -2.0604 1.3975 27 1 -0.3933 0.4417 0.7651 28 1 1.7922 -0.5139 -0.8899 29 1 1.5616 2.4678 -1.2084 30 1 1.5880 2.4585 1.2243 31 1 2.8223 1.0455 2.0629 32 1 3.6518 -0.1131 4.0700 33 1 5.0962 -6.1534 7.5455 34 1 3.5747 -5.7715 8.3866 35 1 5.5371 -8.1551 8.8989 36 1 4.0972 -7.7711 9.8723 37 1 4.5581 -10.3594 8.3220 38 1 4.7016 -10.1660 10.0858 39 1 1.4937 -11.6546 9.6125 40 1 2.3354 -10.0908 7.2130 41 1 0.8959 -9.7065 8.1864 42 1 1.8747 -7.5021 8.7633 43 1 1.7312 -7.6956 6.9995 44 1 1.9483 -3.7683 2.6549 45 1 1.1312 -2.6047 0.6456 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_4146828_16737258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:04:55 Heat of formation + Delta-G solvation = -273.190653 kcal Electronic energy + Delta-G solvation = -32316.060300 eV Core-core repulsion = 27322.492817 eV Total energy + Delta-G solvation = -4993.567483 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.89095 -48.89181 -42.04551 -41.37562 -40.24354 -39.43125 -38.20086 -37.37189 -36.74863 -32.43275 -32.29072 -32.11443 -31.99149 -29.54115 -26.98662 -26.19775 -24.63782 -23.99753 -23.17813 -22.54594 -22.35738 -21.10311 -20.71553 -19.82493 -19.79532 -18.76763 -18.43820 -18.26013 -17.72421 -17.65892 -16.87550 -16.63825 -16.40962 -16.23861 -16.04635 -15.85018 -15.62030 -15.43279 -15.37965 -15.32557 -15.11864 -14.96030 -14.82133 -14.59136 -14.39039 -14.26391 -14.04009 -13.80627 -13.46336 -13.38799 -13.29996 -13.05099 -12.76506 -12.51389 -12.30775 -12.26799 -12.21907 -12.01126 -11.87441 -11.74178 -11.68072 -11.25865 -10.82351 -10.66279 -10.20681 -9.61386 -5.00983 -0.03367 -0.02112 0.15607 0.27255 1.22377 1.53209 1.58115 1.91834 1.92143 2.43009 2.65436 3.04802 3.12813 3.31478 3.41143 3.49759 3.53454 3.54766 3.57780 3.70231 3.84880 3.94351 4.01445 4.05833 4.11148 4.15598 4.16457 4.26072 4.30555 4.34065 4.36619 4.49630 4.60664 4.68518 4.80674 4.80796 4.89697 4.90720 4.93383 5.00000 5.01372 5.05924 5.14897 5.26613 5.28082 5.32131 5.80327 5.90472 6.34655 6.63565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.529 6.529 2 C -0.073 4.073 3 Si 0.686 3.314 4 C -0.138 4.138 5 C -0.083 4.083 6 C -0.119 4.119 7 C 0.105 3.895 8 O -0.287 6.287 9 C 0.468 3.532 10 F -0.164 7.164 11 F -0.163 7.163 12 C 0.463 3.537 13 O -0.433 6.433 14 O -0.329 6.329 15 C 0.070 3.930 16 C -0.090 4.090 17 H 0.090 0.910 18 C -0.110 4.110 19 C -0.111 4.111 20 C 0.102 3.898 21 H 0.055 0.945 22 O -0.569 6.569 23 C -0.152 4.152 24 C -0.115 4.115 25 C -0.189 4.189 26 C -0.051 4.051 27 H 0.377 0.623 28 H 0.120 0.880 29 H -0.256 1.256 30 H -0.259 1.259 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.379 0.621 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.136 0.864 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.913 -0.308 1.036 1.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.335 6.335 2 C -0.183 4.183 3 Si 0.587 3.413 4 C -0.138 4.138 5 C -0.100 4.100 6 C -0.138 4.138 7 C 0.062 3.938 8 O -0.205 6.205 9 C 0.392 3.608 10 F -0.145 7.145 11 F -0.144 7.144 12 C 0.298 3.702 13 O -0.315 6.315 14 O -0.245 6.245 15 C -0.003 4.003 16 C -0.109 4.109 17 H 0.109 0.891 18 C -0.147 4.147 19 C -0.149 4.149 20 C 0.043 3.957 21 H 0.073 0.927 22 O -0.375 6.375 23 C -0.190 4.190 24 C -0.153 4.153 25 C -0.207 4.207 26 C -0.069 4.069 27 H 0.224 0.776 28 H 0.138 0.862 29 H -0.181 1.181 30 H -0.184 1.184 31 H 0.157 0.843 32 H 0.161 0.839 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.227 0.773 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.154 0.846 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.730 0.448 0.839 1.974 hybrid contribution -1.847 -0.360 0.451 1.935 sum -0.117 0.088 1.290 1.298 Atomic orbital electron populations 1.86614 1.17608 1.79960 1.49350 1.25011 0.84018 1.11036 0.98209 0.94980 0.91582 0.74363 0.80363 1.20337 1.01096 0.94906 0.97466 1.20931 0.96651 0.99808 0.92614 1.20397 1.03148 0.90638 0.99575 1.18943 0.96755 0.92604 0.85474 1.86606 1.73968 1.18319 1.41618 1.20469 0.76184 0.80647 0.83465 1.93233 1.30120 1.94779 1.96384 1.93238 1.84485 1.80084 1.56628 1.22023 0.79512 0.82679 0.85962 1.90831 1.34797 1.58011 1.47874 1.86494 1.71484 1.23966 1.42592 1.23539 0.99122 0.95932 0.81683 1.21332 0.97288 0.92132 1.00098 0.89118 1.21480 1.00853 0.95729 0.96676 1.21436 0.94476 0.95471 1.03495 1.21849 0.95879 0.81876 0.96057 0.92654 1.86522 1.30911 1.24224 1.95797 1.22273 1.00854 0.96374 0.99484 1.21570 0.94727 0.96086 1.02876 1.21626 1.02214 1.01115 0.95781 1.20845 0.96330 0.93541 0.96221 0.77577 0.86209 1.18070 1.18371 0.84252 0.83872 0.89739 0.89866 0.90444 0.90996 0.90800 0.90613 0.77318 0.90791 0.91340 0.91471 0.90627 0.84594 0.84609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.42 12.83 -35.23 -0.45 -0.87 16 2 C -0.07 0.06 2.80 36.01 0.10 0.16 16 3 Si 0.69 -1.04 29.89 -169.99 -5.08 -6.12 16 4 C -0.14 0.03 5.35 -104.60 -0.56 -0.53 16 5 C -0.08 0.06 8.66 -39.60 -0.34 -0.29 16 6 C -0.12 -0.05 9.99 -39.43 -0.39 -0.44 16 7 C 0.10 0.21 6.48 -39.21 -0.25 -0.05 16 8 O -0.29 -0.80 9.60 -39.35 -0.38 -1.18 16 9 C 0.47 0.89 2.16 36.01 0.08 0.97 16 10 F -0.16 -0.28 15.29 2.25 0.03 -0.25 16 11 F -0.16 -0.27 15.29 2.25 0.03 -0.24 16 12 C 0.46 0.89 7.47 36.01 0.27 1.16 16 13 O -0.43 -1.65 16.25 -25.47 -0.41 -2.06 16 14 O -0.33 -0.15 9.76 -39.26 -0.38 -0.53 16 15 C 0.07 -0.10 4.84 37.16 0.18 0.08 16 16 C -0.09 0.20 2.44 -90.62 -0.22 -0.02 16 17 H 0.09 -0.18 8.14 -51.93 -0.42 -0.60 16 18 C -0.11 0.30 5.20 -26.73 -0.14 0.16 16 19 C -0.11 0.14 5.57 -26.74 -0.15 -0.01 16 20 C 0.10 -0.11 3.47 -26.74 -0.09 -0.20 16 21 H 0.06 -0.09 8.14 -51.93 -0.42 -0.51 16 22 O -0.57 -0.24 13.32 -35.23 -0.47 -0.71 16 23 C -0.15 0.27 5.55 -26.73 -0.15 0.12 16 24 C -0.12 0.23 5.10 -26.73 -0.14 0.09 16 25 C -0.19 -0.27 8.26 -39.43 -0.33 -0.59 16 26 C -0.05 -0.03 9.68 -39.61 -0.38 -0.41 16 27 H 0.38 -0.74 8.70 45.56 0.40 -0.35 16 28 H 0.12 -0.18 7.96 -51.93 -0.41 -0.60 16 29 H -0.26 -0.49 7.11 56.52 0.40 -0.09 16 30 H -0.26 -0.06 7.00 56.52 0.40 0.34 16 31 H 0.14 -0.37 4.83 -52.49 -0.25 -0.63 16 32 H 0.14 -0.16 8.06 -52.49 -0.42 -0.58 16 33 H 0.08 -0.17 8.13 -51.93 -0.42 -0.59 16 34 H 0.08 -0.16 8.13 -51.93 -0.42 -0.58 16 35 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 36 H 0.07 -0.23 8.14 -51.93 -0.42 -0.65 16 37 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 38 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 39 H 0.38 -1.26 9.08 45.56 0.41 -0.85 16 40 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 41 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 42 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 43 H 0.08 -0.10 7.82 -51.92 -0.41 -0.51 16 44 H 0.14 0.14 5.10 -52.49 -0.27 -0.13 16 45 H 0.14 -0.05 8.06 -52.48 -0.42 -0.48 16 LS Contribution 378.51 15.07 5.70 5.70 Total: 0.00 -7.00 378.51 -9.15 -16.15 By element: Atomic # 1 Polarization: -4.87 SS G_CDS: -5.23 Total: -10.10 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -2.52 Total: 0.20 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: -2.10 Total: -5.35 kcal Atomic # 9 Polarization: -0.56 SS G_CDS: 0.07 Total: -0.49 kcal Atomic # 14 Polarization: -1.04 SS G_CDS: -5.08 Total: -6.12 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -7.00 -9.15 -16.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4146828_16737258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -257.037 kcal (2) G-P(sol) polarization free energy of solvation -7.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -264.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -273.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds