Wall clock time and date at job start Sat Mar 6 2021 08:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86301 * 109.47095 * 2 1 4 4 C 1.86301 * 109.46852 * 240.00246 * 2 1 3 5 5 C 1.86300 * 109.46978 * 120.00342 * 2 1 3 6 6 O 1.45192 * 109.47474 * 60.00020 * 5 2 1 7 7 C 1.34225 * 117.00088 * 74.99676 * 6 5 2 8 8 O 1.20825 * 120.00047 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99932 * 180.02562 * 7 6 5 10 10 F 1.39900 * 109.47515 * 60.00084 * 9 7 6 11 11 F 1.39897 * 109.47274 * 299.99990 * 9 7 6 12 12 O 1.42905 * 109.47264 * 180.02562 * 9 7 6 13 13 C 1.35897 * 117.00093 * 179.97438 * 12 9 7 14 14 C 1.38737 * 120.05547 * 359.72645 * 13 12 9 15 15 C 1.38149 * 119.94020 * 179.74326 * 14 13 12 16 16 C 1.38269 * 120.05599 * 0.51033 * 15 14 13 17 17 C 1.50701 * 119.94263 * 179.74419 * 16 15 14 18 18 O 1.42895 * 109.47045 * 245.01911 * 17 16 15 19 19 Si 1.86303 * 109.46953 * 5.02003 * 17 16 15 20 20 H 1.48501 * 109.46717 * 179.97438 * 19 17 16 21 21 H 1.48500 * 109.47229 * 299.99757 * 19 17 16 22 22 H 1.48498 * 109.47146 * 60.00114 * 19 17 16 23 23 C 1.38265 * 120.10911 * 359.76477 * 16 15 14 24 24 C 1.38141 * 120.06229 * 359.97438 * 23 16 15 25 25 H 1.09010 * 109.46696 * 299.99763 * 1 2 3 26 26 H 1.08992 * 109.47237 * 59.99608 * 1 2 3 27 27 H 1.08996 * 109.47345 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46902 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47398 * 300.00293 * 3 2 1 30 30 H 1.08997 * 109.46965 * 60.00175 * 3 2 1 31 31 H 1.09004 * 109.46756 * 299.99770 * 4 2 1 32 32 H 1.08992 * 109.47081 * 60.00050 * 4 2 1 33 33 H 1.09002 * 109.46659 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47426 * 299.99415 * 5 2 1 35 35 H 1.09003 * 109.46905 * 180.02562 * 5 2 1 36 36 H 1.08000 * 120.02659 * 359.97438 * 14 13 12 37 37 H 1.07999 * 119.97009 * 180.23164 * 15 14 13 38 38 H 1.08999 * 109.46655 * 125.01749 * 17 16 15 39 39 H 0.96701 * 113.99903 * 180.02562 * 18 17 16 40 40 H 1.08004 * 119.96780 * 179.97438 * 23 16 15 41 41 H 1.07997 * 120.03246 * 179.97438 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4840 -0.8783 1.5211 6 8 2.0000 -2.2472 1.5211 7 6 2.5942 -3.1036 0.6754 8 8 3.4894 -2.7221 -0.0409 9 6 2.1447 -4.5409 0.6192 10 9 0.7938 -4.5935 0.2596 11 9 2.3162 -5.1326 1.8752 12 8 2.9237 -5.2462 -0.3494 13 6 2.6439 -6.5644 -0.5249 14 6 1.6442 -7.1682 0.2239 15 6 1.3582 -8.5072 0.0398 16 6 2.0745 -9.2479 -0.8822 17 6 1.7643 -10.7098 -1.0768 18 8 2.8879 -11.4934 -0.6702 19 14 0.2804 -11.1718 -0.0494 20 1 -0.0256 -12.6121 -0.2417 21 1 0.5710 -10.9140 1.3839 22 1 -0.8873 -10.3574 -0.4720 23 6 3.0752 -8.6497 -1.6255 24 6 3.3615 -7.3099 -1.4491 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.5740 1.7564 0.0005 29 1 2.1207 2.2703 -0.8899 30 1 2.1207 2.2702 0.8900 31 1 2.1206 -1.9059 -1.5211 32 1 2.1206 -0.3643 -2.4111 33 1 3.5740 -0.8786 -1.5209 34 1 2.1208 -0.3645 2.4111 35 1 3.5740 -0.8779 1.5213 36 1 1.0875 -6.5911 0.9474 37 1 0.5775 -8.9768 0.6197 38 1 1.5509 -10.8989 -2.1289 39 1 2.7588 -12.4467 -0.7686 40 1 3.6335 -9.2306 -2.3448 41 1 4.1435 -6.8432 -2.0297 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4146828_4858416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:54:42 Heat of formation + Delta-G solvation = -234.579183 kcal Electronic energy + Delta-G solvation = -27417.774986 eV Core-core repulsion = 23059.196290 eV Total energy + Delta-G solvation = -4358.578696 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.105 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.02480 -49.02717 -42.06841 -41.39822 -39.38654 -38.04221 -37.29362 -32.59248 -32.17452 -30.34136 -29.52024 -28.46363 -28.39087 -27.71879 -26.20856 -24.63769 -23.02371 -22.46289 -20.83637 -19.96878 -19.93870 -18.74941 -18.46323 -17.92447 -17.66674 -17.15173 -16.57652 -16.31939 -16.10800 -15.87765 -15.52654 -15.44578 -15.26100 -14.83451 -14.73665 -14.56240 -14.48883 -14.33143 -14.10443 -14.02292 -13.84997 -13.73999 -13.53200 -13.29407 -13.19266 -13.12469 -13.05611 -12.81178 -12.59856 -12.24342 -12.14315 -11.97380 -11.76701 -10.90838 -10.83688 -10.61780 -10.33522 -10.22573 -9.63049 -0.06045 -0.05519 0.10533 0.18844 1.15586 1.41384 1.44614 1.47451 1.49940 1.76357 1.81023 1.90480 1.95481 2.38655 2.48616 2.84677 3.00835 3.38255 3.48258 3.61769 3.89834 4.01865 4.02448 4.15852 4.32184 4.52284 4.57944 4.64591 4.68044 4.75655 4.78174 4.79033 4.79642 4.82199 4.84089 4.84776 4.98803 5.28987 5.33581 5.49591 5.57263 5.60824 5.75955 5.90164 6.83314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.459 4.459 2 Si 1.058 2.942 3 C -0.446 4.446 4 C -0.464 4.464 5 C -0.263 4.263 6 O -0.311 6.311 7 C 0.445 3.555 8 O -0.434 6.434 9 C 0.464 3.536 10 F -0.164 7.164 11 F -0.166 7.166 12 O -0.296 6.296 13 C 0.082 3.918 14 C -0.195 4.195 15 C -0.094 4.094 16 C -0.103 4.103 17 C -0.075 4.075 18 O -0.561 6.561 19 Si 0.968 3.032 20 H -0.251 1.251 21 H -0.272 1.272 22 H -0.259 1.259 23 C -0.053 4.053 24 C -0.128 4.128 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.151 0.849 35 H 0.092 0.908 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.104 0.896 39 H 0.400 0.600 40 H 0.162 0.838 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.751 0.351 -0.788 1.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.566 4.566 2 Si 1.250 2.750 3 C -0.555 4.555 4 C -0.569 4.569 5 C -0.378 4.378 6 O -0.226 6.226 7 C 0.281 3.719 8 O -0.319 6.319 9 C 0.388 3.612 10 F -0.145 7.145 11 F -0.148 7.148 12 O -0.214 6.214 13 C 0.040 3.960 14 C -0.214 4.214 15 C -0.112 4.112 16 C -0.104 4.104 17 C -0.186 4.186 18 O -0.371 6.371 19 Si 0.793 3.207 20 H -0.175 1.175 21 H -0.197 1.197 22 H -0.183 1.183 23 C -0.071 4.071 24 C -0.146 4.146 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.169 0.831 35 H 0.111 0.889 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.122 0.878 39 H 0.251 0.749 40 H 0.180 0.820 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.822 0.914 -0.407 2.078 hybrid contribution 0.022 -0.527 0.043 0.529 sum -1.800 0.387 -0.364 1.877 Atomic orbital electron populations 1.26198 1.20498 1.04464 1.05473 0.78863 0.66673 0.66796 0.62653 1.26007 1.06675 1.17107 1.05743 1.26592 1.06600 1.06788 1.16891 1.29152 1.06563 0.80398 1.21710 1.86444 1.57790 1.22883 1.55450 1.22060 0.82526 0.86651 0.80677 1.90804 1.26655 1.76035 1.38358 1.20588 0.76230 0.88140 0.76197 1.93220 1.33481 1.96617 1.91206 1.93216 1.94729 1.85033 1.41791 1.86591 1.57085 1.22351 1.55414 1.19191 0.97513 0.80764 0.98518 1.21552 0.99858 0.97385 1.02576 1.21002 0.99709 0.93361 0.97098 1.19643 0.97914 0.95277 0.97537 1.24653 0.98434 0.89204 1.06270 1.86460 1.38810 1.23146 1.88648 0.85437 0.75944 0.80542 0.78797 1.17481 1.19728 1.18274 1.21147 0.95181 0.92622 0.98148 1.20771 1.01335 0.93941 0.98560 0.89880 0.90499 0.91963 0.90759 0.90271 0.89738 0.93559 0.90898 0.91306 0.83147 0.88930 0.84488 0.84494 0.87790 0.74949 0.82038 0.82792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.44 8.65 113.37 0.98 2.42 16 2 Si 1.06 -4.86 12.12 68.60 0.83 -4.02 16 3 C -0.45 2.56 8.65 113.37 0.98 3.54 16 4 C -0.46 -0.91 7.10 113.37 0.81 -0.10 16 5 C -0.26 0.81 5.40 113.37 0.61 1.42 16 6 O -0.31 -0.88 9.92 -51.37 -0.51 -1.39 16 7 C 0.45 2.84 6.25 71.24 0.45 3.28 16 8 O -0.43 -3.74 12.18 28.40 0.35 -3.39 16 9 C 0.46 3.38 2.16 71.24 0.15 3.53 16 10 F -0.16 -1.03 15.31 44.97 0.69 -0.35 16 11 F -0.17 -1.20 15.27 44.97 0.69 -0.51 16 12 O -0.30 -2.68 9.60 -73.31 -0.70 -3.39 16 13 C 0.08 0.63 6.48 22.51 0.15 0.77 16 14 C -0.20 -1.31 8.26 22.37 0.18 -1.13 16 15 C -0.09 -0.43 8.66 22.26 0.19 -0.24 16 16 C -0.10 -0.29 5.39 -19.85 -0.11 -0.39 16 17 C -0.08 0.16 2.79 71.24 0.20 0.36 16 18 O -0.56 0.77 12.81 -148.98 -1.91 -1.14 16 19 Si 0.97 -1.52 25.14 68.60 1.72 0.21 16 20 H -0.25 0.56 7.11 99.48 0.71 1.27 16 21 H -0.27 -0.68 7.04 99.48 0.70 0.02 16 22 H -0.26 0.00 7.11 99.48 0.71 0.71 16 23 C -0.05 -0.10 9.68 22.25 0.22 0.12 16 24 C -0.13 -0.52 9.99 22.37 0.22 -0.30 16 25 H 0.08 -0.41 7.96 -2.38 -0.02 -0.43 16 26 H 0.08 -0.26 7.96 -2.39 -0.02 -0.28 16 27 H 0.06 -0.05 7.96 -2.39 -0.02 -0.07 16 28 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 29 H 0.08 -0.43 7.96 -2.39 -0.02 -0.45 16 30 H 0.08 -0.64 7.96 -2.39 -0.02 -0.65 16 31 H 0.05 0.25 6.28 -2.38 -0.01 0.24 16 32 H 0.07 0.04 7.96 -2.39 -0.02 0.02 16 33 H 0.07 0.27 7.43 -2.39 -0.02 0.25 16 34 H 0.15 -1.30 7.96 -2.39 -0.02 -1.32 16 35 H 0.09 -0.29 7.52 -2.39 -0.02 -0.30 16 36 H 0.14 0.78 5.10 -2.91 -0.01 0.77 16 37 H 0.14 0.25 4.86 -2.91 -0.01 0.24 16 38 H 0.10 -0.74 7.96 -2.39 -0.02 -0.76 16 39 H 0.40 -4.16 8.74 -74.06 -0.65 -4.81 16 40 H 0.16 -0.46 8.06 -2.91 -0.02 -0.48 16 41 H 0.15 0.12 8.06 -2.91 -0.02 0.10 16 Total: 0.00 -14.43 350.77 7.36 -7.07 By element: Atomic # 1 Polarization: -7.53 SS G_CDS: 1.17 Total: -6.37 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 5.03 Total: 13.28 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -2.78 Total: -9.31 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 1.38 Total: -0.86 kcal Atomic # 14 Polarization: -6.37 SS G_CDS: 2.56 Total: -3.82 kcal Total: -14.43 7.36 -7.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4146828_4858416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -227.509 kcal (2) G-P(sol) polarization free energy of solvation -14.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds