Wall clock time and date at job start Sat Mar 6 2021 07:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.46980 * 2 1 4 4 C 1.86296 * 109.47367 * 240.00054 * 2 1 3 5 5 C 1.86803 * 109.46852 * 119.99832 * 2 1 3 6 6 C 1.38234 * 119.99940 * 90.00443 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.28096 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 O 1.45206 * 109.47108 * 270.27964 * 9 8 7 11 11 C 1.34229 * 117.00402 * 179.97438 * 10 9 8 12 12 O 1.20826 * 119.99257 * 359.97438 * 11 10 9 13 13 C 1.50692 * 120.00115 * 179.97438 * 11 10 9 14 14 F 1.39904 * 109.47145 * 299.99934 * 13 11 10 15 15 F 1.39905 * 109.47033 * 59.99890 * 13 11 10 16 16 O 1.42895 * 109.47222 * 179.97438 * 13 11 10 17 17 C 1.35903 * 117.00371 * 179.97438 * 16 13 11 18 18 C 1.38729 * 120.05190 * 359.73020 * 17 16 13 19 19 C 1.38152 * 119.94143 * 179.74329 * 18 17 16 20 20 C 1.38260 * 120.05608 * 0.50481 * 19 18 17 21 21 C 1.50695 * 119.94593 * 179.74470 * 20 19 18 22 22 O 1.42903 * 109.47327 * 245.02525 * 21 20 19 23 23 Si 1.86303 * 109.47093 * 5.02521 * 21 20 19 24 24 H 1.48496 * 109.47068 * 59.99820 * 23 21 20 25 25 H 1.48497 * 109.47257 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46853 * 299.99909 * 23 21 20 27 27 C 1.38272 * 120.11306 * 359.77017 * 20 19 18 28 28 C 1.38149 * 120.05146 * 359.97438 * 27 20 19 29 29 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 30 30 C 1.38234 * 119.99820 * 270.02211 * 5 2 1 31 31 H 1.08992 * 109.47179 * 300.00318 * 1 2 3 32 32 H 1.09007 * 109.47049 * 59.99985 * 1 2 3 33 33 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46698 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47017 * 299.99765 * 3 2 1 36 36 H 1.09004 * 109.46851 * 60.00120 * 3 2 1 37 37 H 1.09006 * 109.46796 * 300.00138 * 4 2 1 38 38 H 1.08998 * 109.47288 * 59.99832 * 4 2 1 39 39 H 1.09002 * 109.47253 * 180.02562 * 4 2 1 40 40 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 41 41 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 42 42 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 43 43 H 1.08997 * 109.47544 * 150.28201 * 9 8 7 44 44 H 1.07999 * 120.03369 * 359.97438 * 18 17 16 45 45 H 1.07997 * 119.96964 * 180.22808 * 19 18 17 46 46 H 1.09002 * 109.47076 * 125.02443 * 21 20 19 47 47 H 0.96696 * 113.99677 * 59.99954 * 22 21 20 48 48 H 1.07995 * 119.97575 * 179.97438 * 27 20 19 49 49 H 1.08003 * 120.02323 * 179.97438 * 28 27 20 50 50 H 1.08001 * 120.00274 * 179.72697 * 29 8 7 51 51 H 1.07997 * 120.00460 * 359.97438 * 30 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1712 -2.8957 2.6215 8 6 3.4066 -2.1839 3.7828 9 6 3.9089 -2.8942 5.0133 10 8 2.7796 -3.3510 5.8034 11 6 3.0572 -4.0081 6.9405 12 8 4.2060 -4.1957 7.2646 13 6 1.9363 -4.5117 7.8127 14 9 1.1489 -3.4329 8.2294 15 9 1.1483 -5.4111 7.0864 16 8 2.4824 -5.1730 8.9557 17 6 1.5992 -5.6892 9.8504 18 6 0.2351 -5.5568 9.6355 19 6 -0.6607 -6.0871 10.5439 20 6 -0.1986 -6.7400 11.6716 21 6 -1.1779 -7.3124 12.6637 22 8 -1.0536 -6.6216 13.9085 23 14 -2.9116 -7.1107 12.0120 24 1 -3.0408 -7.8284 10.7185 25 1 -3.8766 -7.6753 12.9894 26 1 -3.1992 -5.6680 11.8086 27 6 1.1605 -6.8682 11.8910 28 6 2.0603 -6.3444 10.9830 29 6 3.1758 -0.8214 3.8172 30 6 2.7155 -0.1696 2.6883 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 3.5740 1.7565 0.0005 35 1 2.1207 2.2703 -0.8900 36 1 2.1206 2.2703 0.8900 37 1 2.1207 -1.9059 -1.5211 38 1 2.1208 -0.3644 -2.4111 39 1 3.5741 -0.8786 -1.5208 40 1 2.5357 -2.7986 0.5826 41 1 3.3471 -3.9610 2.5960 42 1 4.5149 -3.7504 4.7167 43 1 4.5141 -2.2090 5.6069 44 1 -0.1264 -5.0431 8.7570 45 1 -1.7227 -5.9875 10.3751 46 1 -0.9668 -8.3713 12.8131 47 1 -1.2281 -5.6723 13.8506 48 1 1.5190 -7.3783 12.7728 49 1 3.1219 -6.4444 11.1550 50 1 3.3555 -0.2659 4.7258 51 1 2.5356 0.8949 2.7150 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_4146828_9435856.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:52:57 Heat of formation + Delta-G solvation = -231.880476 kcal Electronic energy + Delta-G solvation = -35660.690981 eV Core-core repulsion = 30478.249509 eV Total energy + Delta-G solvation = -5182.441471 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 410.137 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -50.87052 -48.87145 -42.00914 -41.35551 -40.15610 -39.38683 -38.01851 -37.26028 -33.31929 -32.47000 -32.05832 -32.01305 -29.81116 -29.50997 -28.51034 -28.46787 -27.42392 -26.27441 -24.65105 -23.61786 -23.14908 -22.52064 -22.22445 -20.75772 -19.87421 -19.78315 -18.85431 -18.48617 -17.73488 -17.67766 -17.42745 -17.04087 -16.39668 -16.32288 -16.12853 -15.94407 -15.81090 -15.80820 -15.48332 -15.33580 -15.11137 -15.09626 -14.60489 -14.51052 -14.44566 -14.29415 -14.26916 -14.24353 -14.20910 -14.02547 -13.89439 -13.69301 -13.59275 -13.32623 -13.28873 -13.16090 -13.04060 -12.88527 -12.45060 -12.30339 -12.28847 -12.18654 -12.08314 -11.93107 -11.65127 -11.11401 -10.97246 -10.94697 -10.48794 -10.18307 -9.90352 -9.83782 -9.58836 -0.30072 0.01223 0.15248 0.28944 0.35100 0.42567 1.09827 1.38511 1.47073 1.60266 1.62033 1.77780 1.84489 1.87312 1.99504 2.45469 2.46737 2.63708 2.98335 3.14810 3.39803 3.47780 3.51552 3.62281 3.64130 3.71581 3.93474 4.05087 4.07074 4.08579 4.17121 4.38253 4.38658 4.53453 4.56133 4.64316 4.65304 4.68777 4.69078 4.69797 4.70768 4.71459 4.79083 4.85848 4.89431 5.02645 5.04222 5.27332 5.33560 5.35487 5.39206 5.41281 5.46949 5.48926 5.52199 5.81645 5.91554 5.97809 6.49195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.356 4.356 6 C -0.092 4.092 7 C -0.101 4.101 8 C -0.098 4.098 9 C 0.109 3.891 10 O -0.326 6.326 11 C 0.463 3.537 12 O -0.433 6.433 13 C 0.468 3.532 14 F -0.163 7.163 15 F -0.163 7.163 16 O -0.287 6.287 17 C 0.105 3.895 18 C -0.184 4.184 19 C -0.085 4.085 20 C -0.140 4.140 21 C -0.077 4.077 22 O -0.537 6.537 23 Si 0.945 3.055 24 H -0.249 1.249 25 H -0.251 1.251 26 H -0.251 1.251 27 C -0.053 4.053 28 C -0.123 4.123 29 C -0.101 4.101 30 C -0.092 4.092 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.137 0.863 45 H 0.129 0.871 46 H 0.120 0.880 47 H 0.377 0.623 48 H 0.143 0.857 49 H 0.142 0.858 50 H 0.123 0.877 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.951 1.749 -3.013 3.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.252 2.748 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.398 4.398 6 C -0.110 4.110 7 C -0.119 4.119 8 C -0.098 4.098 9 C 0.037 3.963 10 O -0.243 6.243 11 C 0.298 3.702 12 O -0.315 6.315 13 C 0.392 3.608 14 F -0.145 7.145 15 F -0.145 7.145 16 O -0.205 6.205 17 C 0.062 3.938 18 C -0.203 4.203 19 C -0.103 4.103 20 C -0.141 4.141 21 C -0.188 4.188 22 O -0.342 6.342 23 Si 0.767 3.233 24 H -0.172 1.172 25 H -0.175 1.175 26 H -0.175 1.175 27 C -0.071 4.071 28 C -0.141 4.141 29 C -0.120 4.120 30 C -0.110 4.110 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.155 0.845 45 H 0.147 0.853 46 H 0.138 0.862 47 H 0.224 0.776 48 H 0.161 0.839 49 H 0.160 0.840 50 H 0.141 0.859 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.075 1.172 -2.996 3.392 hybrid contribution 0.209 0.454 -0.061 0.504 sum -0.866 1.627 -3.057 3.570 Atomic orbital electron populations 1.26123 1.20353 1.04658 1.04578 0.78199 0.66942 0.66146 0.63562 1.26136 1.06483 1.18482 1.04658 1.26136 1.06485 1.08077 1.15066 1.27562 1.02295 0.99564 1.10343 1.21104 0.97398 0.94675 0.97787 1.21183 0.98180 0.99745 0.92840 1.19376 1.03182 0.94010 0.93271 1.22195 0.85360 0.99465 0.89250 1.86602 1.40733 1.65530 1.31400 1.22056 0.88327 0.78094 0.81737 1.90833 1.20090 1.50389 1.70208 1.20473 0.80837 0.77142 0.82328 1.93233 1.75466 1.55553 1.90220 1.93236 1.75440 1.67988 1.77800 1.86616 1.34135 1.69209 1.30501 1.18940 0.88112 0.96585 0.90124 1.21485 0.91556 1.04805 1.02445 1.20864 0.99532 0.96419 0.93476 1.20368 0.95587 1.01379 0.96733 1.24937 1.07205 0.99861 0.86797 1.86527 1.93622 1.25217 1.28882 0.85747 0.75687 0.81582 0.80235 1.17249 1.17530 1.17458 1.20909 0.91533 0.96647 0.97997 1.20547 1.01517 0.99940 0.92143 1.21184 0.98175 0.93707 0.98886 1.21103 0.97378 0.99933 0.92547 0.91121 0.90952 0.91123 0.91020 0.90858 0.91133 0.91133 0.90858 0.91018 0.85638 0.85870 0.89076 0.89076 0.84529 0.85298 0.86174 0.77566 0.83931 0.83979 0.85869 0.85638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.86 8.65 101.05 0.87 1.74 16 2 Si 1.06 -3.30 12.32 -169.99 -2.09 -5.39 16 3 C -0.45 1.08 8.53 101.05 0.86 1.94 16 4 C -0.45 1.08 8.53 101.05 0.86 1.94 16 5 C -0.36 0.32 4.59 -39.58 -0.18 0.14 16 6 C -0.09 0.04 9.29 -39.58 -0.37 -0.33 16 7 C -0.10 -0.02 9.70 -39.58 -0.38 -0.40 16 8 C -0.10 -0.05 5.52 -104.63 -0.58 -0.63 16 9 C 0.11 0.02 5.59 36.01 0.20 0.22 16 10 O -0.33 -0.60 10.20 -39.25 -0.40 -1.00 16 11 C 0.46 1.25 7.47 36.00 0.27 1.52 16 12 O -0.43 -1.90 16.25 -25.48 -0.41 -2.31 16 13 C 0.47 1.20 2.16 36.00 0.08 1.28 16 14 F -0.16 -0.37 15.27 2.25 0.03 -0.34 16 15 F -0.16 -0.38 15.31 2.25 0.03 -0.35 16 16 O -0.29 -0.96 9.60 -39.39 -0.38 -1.33 16 17 C 0.10 0.26 6.48 -39.22 -0.25 0.01 16 18 C -0.18 -0.34 8.26 -39.43 -0.33 -0.66 16 19 C -0.09 -0.06 8.66 -39.60 -0.34 -0.40 16 20 C -0.14 -0.02 5.35 -104.60 -0.56 -0.58 16 21 C -0.08 0.07 2.80 36.00 0.10 0.17 16 22 O -0.54 0.10 12.83 -35.23 -0.45 -0.35 16 23 Si 0.94 -0.78 25.14 -169.99 -4.27 -5.05 16 24 H -0.25 0.04 7.11 56.52 0.40 0.44 16 25 H -0.25 -0.16 7.11 56.52 0.40 0.24 16 26 H -0.25 0.17 7.04 56.52 0.40 0.56 16 27 C -0.05 -0.01 9.68 -39.60 -0.38 -0.39 16 28 C -0.12 -0.13 9.99 -39.43 -0.39 -0.52 16 29 C -0.10 -0.02 9.70 -39.58 -0.38 -0.40 16 30 C -0.09 0.04 9.29 -39.58 -0.37 -0.32 16 31 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 32 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 33 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 34 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 35 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 36 H 0.07 -0.18 7.69 -51.93 -0.40 -0.58 16 37 H 0.07 -0.18 7.69 -51.93 -0.40 -0.58 16 38 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 39 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 40 H 0.13 -0.30 7.43 -52.49 -0.39 -0.69 16 41 H 0.12 -0.16 8.06 -52.48 -0.42 -0.58 16 42 H 0.09 -0.07 8.08 -51.93 -0.42 -0.49 16 43 H 0.09 -0.07 8.08 -51.93 -0.42 -0.49 16 44 H 0.14 0.19 5.10 -52.49 -0.27 -0.08 16 45 H 0.13 -0.09 4.86 -52.49 -0.25 -0.35 16 46 H 0.12 -0.22 7.96 -51.93 -0.41 -0.64 16 47 H 0.38 -1.22 8.70 45.56 0.40 -0.82 16 48 H 0.14 -0.20 8.06 -52.49 -0.42 -0.62 16 49 H 0.14 -0.04 8.06 -52.48 -0.42 -0.46 16 50 H 0.12 -0.16 8.06 -52.49 -0.42 -0.58 16 51 H 0.13 -0.30 7.43 -52.49 -0.39 -0.69 16 LS Contribution 439.41 15.07 6.62 6.62 Total: 0.00 -6.60 439.41 -8.94 -15.54 By element: Atomic # 1 Polarization: -4.00 SS G_CDS: -6.34 Total: -10.35 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -1.28 Total: 4.31 kcal Atomic # 8 Polarization: -3.35 SS G_CDS: -1.64 Total: -4.99 kcal Atomic # 9 Polarization: -0.76 SS G_CDS: 0.07 Total: -0.69 kcal Atomic # 14 Polarization: -4.07 SS G_CDS: -6.37 Total: -10.44 kcal Total LS contribution 6.62 Total: 6.62 kcal Total: -6.60 -8.94 -15.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4146828_9435856.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -216.340 kcal (2) G-P(sol) polarization free energy of solvation -6.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds