Wall clock time and date at job start Sat Mar 6 2021 07:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.46980 * 2 1 4 4 C 1.86296 * 109.47367 * 240.00054 * 2 1 3 5 5 C 1.86803 * 109.46852 * 119.99832 * 2 1 3 6 6 C 1.38234 * 119.99940 * 90.00443 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.28096 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 O 1.45206 * 109.47108 * 270.27964 * 9 8 7 11 11 C 1.34229 * 117.00402 * 179.97438 * 10 9 8 12 12 O 1.20826 * 119.99257 * 359.97438 * 11 10 9 13 13 C 1.50692 * 120.00115 * 179.97438 * 11 10 9 14 14 F 1.39904 * 109.47145 * 299.99934 * 13 11 10 15 15 F 1.39905 * 109.47033 * 59.99890 * 13 11 10 16 16 O 1.42895 * 109.47222 * 179.97438 * 13 11 10 17 17 C 1.35903 * 117.00371 * 179.97438 * 16 13 11 18 18 C 1.38729 * 120.05190 * 359.73020 * 17 16 13 19 19 C 1.38152 * 119.94143 * 179.74329 * 18 17 16 20 20 C 1.38260 * 120.05608 * 0.50481 * 19 18 17 21 21 C 1.50695 * 119.94593 * 179.74470 * 20 19 18 22 22 O 1.42903 * 109.47327 * 245.02525 * 21 20 19 23 23 Si 1.86303 * 109.47093 * 5.02521 * 21 20 19 24 24 H 1.48496 * 109.47068 * 59.99820 * 23 21 20 25 25 H 1.48497 * 109.47257 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46853 * 299.99909 * 23 21 20 27 27 C 1.38272 * 120.11306 * 359.77017 * 20 19 18 28 28 C 1.38149 * 120.05146 * 359.97438 * 27 20 19 29 29 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 30 30 C 1.38234 * 119.99820 * 270.02211 * 5 2 1 31 31 H 1.08992 * 109.47179 * 300.00318 * 1 2 3 32 32 H 1.09007 * 109.47049 * 59.99985 * 1 2 3 33 33 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46698 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47017 * 299.99765 * 3 2 1 36 36 H 1.09004 * 109.46851 * 60.00120 * 3 2 1 37 37 H 1.09006 * 109.46796 * 300.00138 * 4 2 1 38 38 H 1.08998 * 109.47288 * 59.99832 * 4 2 1 39 39 H 1.09002 * 109.47253 * 180.02562 * 4 2 1 40 40 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 41 41 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 42 42 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 43 43 H 1.08997 * 109.47544 * 150.28201 * 9 8 7 44 44 H 1.07999 * 120.03369 * 359.97438 * 18 17 16 45 45 H 1.07997 * 119.96964 * 180.22808 * 19 18 17 46 46 H 1.09002 * 109.47076 * 125.02443 * 21 20 19 47 47 H 0.96696 * 113.99677 * 59.99954 * 22 21 20 48 48 H 1.07995 * 119.97575 * 179.97438 * 27 20 19 49 49 H 1.08003 * 120.02323 * 179.97438 * 28 27 20 50 50 H 1.08001 * 120.00274 * 179.72697 * 29 8 7 51 51 H 1.07997 * 120.00460 * 359.97438 * 30 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1712 -2.8957 2.6215 8 6 3.4066 -2.1839 3.7828 9 6 3.9089 -2.8942 5.0133 10 8 2.7796 -3.3510 5.8034 11 6 3.0572 -4.0081 6.9405 12 8 4.2060 -4.1957 7.2646 13 6 1.9363 -4.5117 7.8127 14 9 1.1489 -3.4329 8.2294 15 9 1.1483 -5.4111 7.0864 16 8 2.4824 -5.1730 8.9557 17 6 1.5992 -5.6892 9.8504 18 6 0.2351 -5.5568 9.6355 19 6 -0.6607 -6.0871 10.5439 20 6 -0.1986 -6.7400 11.6716 21 6 -1.1779 -7.3124 12.6637 22 8 -1.0536 -6.6216 13.9085 23 14 -2.9116 -7.1107 12.0120 24 1 -3.0408 -7.8284 10.7185 25 1 -3.8766 -7.6753 12.9894 26 1 -3.1992 -5.6680 11.8086 27 6 1.1605 -6.8682 11.8910 28 6 2.0603 -6.3444 10.9830 29 6 3.1758 -0.8214 3.8172 30 6 2.7155 -0.1696 2.6883 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 3.5740 1.7565 0.0005 35 1 2.1207 2.2703 -0.8900 36 1 2.1206 2.2703 0.8900 37 1 2.1207 -1.9059 -1.5211 38 1 2.1208 -0.3644 -2.4111 39 1 3.5741 -0.8786 -1.5208 40 1 2.5357 -2.7986 0.5826 41 1 3.3471 -3.9610 2.5960 42 1 4.5149 -3.7504 4.7167 43 1 4.5141 -2.2090 5.6069 44 1 -0.1264 -5.0431 8.7570 45 1 -1.7227 -5.9875 10.3751 46 1 -0.9668 -8.3713 12.8131 47 1 -1.2281 -5.6723 13.8506 48 1 1.5190 -7.3783 12.7728 49 1 3.1219 -6.4444 11.1550 50 1 3.3555 -0.2659 4.7258 51 1 2.5356 0.8949 2.7150 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4146828_9435856.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:52:56 Heat of formation + Delta-G solvation = -221.288140 kcal Electronic energy + Delta-G solvation = -35660.231663 eV Core-core repulsion = 30478.249509 eV Total energy + Delta-G solvation = -5181.982153 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 410.137 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -51.06074 -49.06248 -42.19315 -41.44307 -40.12049 -39.45347 -38.17291 -37.25708 -33.29945 -32.51156 -32.10464 -31.93769 -29.86315 -29.39447 -28.29565 -28.27660 -27.42884 -26.28927 -24.72443 -23.54873 -23.23343 -22.61235 -22.20082 -20.89740 -20.02114 -19.97708 -18.97751 -18.51397 -17.81165 -17.73523 -17.49344 -17.05568 -16.42093 -16.33659 -16.15871 -15.99288 -15.88028 -15.82390 -15.53987 -15.50496 -15.28639 -15.13023 -14.63812 -14.47369 -14.47333 -14.34504 -14.30478 -14.22230 -14.03140 -13.89884 -13.73405 -13.68152 -13.51862 -13.12137 -13.11517 -13.10393 -12.96794 -12.82352 -12.50061 -12.33430 -12.32283 -12.23168 -12.12264 -11.89075 -11.64606 -10.94186 -10.82417 -10.76158 -10.43877 -10.22624 -9.85465 -9.77460 -9.66150 -0.37604 -0.07684 0.09638 0.10986 0.32241 0.47530 1.16669 1.43971 1.46195 1.51233 1.77611 1.81693 1.90988 2.01882 2.08000 2.40443 2.58045 2.65422 2.96469 2.98722 3.42936 3.50841 3.51241 3.61852 3.66772 3.72089 3.95689 4.02250 4.13105 4.14424 4.16582 4.36519 4.48900 4.58391 4.60969 4.65456 4.79679 4.83880 4.84046 4.84309 4.88511 4.89415 4.89757 4.90050 4.92963 4.98899 5.11220 5.29580 5.32525 5.33262 5.49239 5.54174 5.59166 5.67678 5.70691 5.74203 5.76164 6.05956 6.69751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.127 2.873 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.368 4.368 6 C -0.104 4.104 7 C -0.116 4.116 8 C -0.113 4.113 9 C 0.106 3.894 10 O -0.328 6.328 11 C 0.469 3.531 12 O -0.453 6.453 13 C 0.469 3.531 14 F -0.163 7.163 15 F -0.163 7.163 16 O -0.298 6.298 17 C 0.082 3.918 18 C -0.195 4.195 19 C -0.091 4.091 20 C -0.138 4.138 21 C -0.072 4.072 22 O -0.550 6.550 23 Si 0.972 3.028 24 H -0.258 1.258 25 H -0.272 1.272 26 H -0.252 1.252 27 C -0.052 4.052 28 C -0.127 4.127 29 C -0.116 4.116 30 C -0.103 4.103 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.142 0.858 41 H 0.132 0.868 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.136 0.864 45 H 0.141 0.859 46 H 0.132 0.868 47 H 0.389 0.611 48 H 0.160 0.840 49 H 0.152 0.848 50 H 0.132 0.868 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.159 1.863 -3.096 3.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.315 2.685 3 C -0.569 4.569 4 C -0.569 4.569 5 C -0.407 4.407 6 C -0.121 4.121 7 C -0.134 4.134 8 C -0.113 4.113 9 C 0.034 3.966 10 O -0.244 6.244 11 C 0.305 3.695 12 O -0.337 6.337 13 C 0.393 3.607 14 F -0.144 7.144 15 F -0.145 7.145 16 O -0.216 6.216 17 C 0.040 3.960 18 C -0.213 4.213 19 C -0.109 4.109 20 C -0.138 4.138 21 C -0.182 4.182 22 O -0.357 6.357 23 Si 0.797 3.203 24 H -0.183 1.183 25 H -0.197 1.197 26 H -0.176 1.176 27 C -0.069 4.069 28 C -0.146 4.146 29 C -0.134 4.134 30 C -0.121 4.121 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.160 0.840 41 H 0.150 0.850 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.154 0.846 45 H 0.158 0.842 46 H 0.150 0.850 47 H 0.238 0.762 48 H 0.178 0.822 49 H 0.170 0.830 50 H 0.150 0.850 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.290 1.298 -3.077 3.581 hybrid contribution 0.227 0.431 -0.041 0.489 sum -1.063 1.729 -3.118 3.721 Atomic orbital electron populations 1.26311 1.21775 1.04445 1.04574 0.77174 0.65060 0.64713 0.61603 1.26275 1.06486 1.19266 1.04911 1.26276 1.06488 1.08492 1.15690 1.28114 1.01649 0.99688 1.11266 1.21419 0.97239 0.95183 0.98281 1.21427 0.98408 1.00417 0.93116 1.19496 1.03954 0.94367 0.93453 1.22371 0.85038 0.99984 0.89191 1.86606 1.41604 1.65140 1.31084 1.22059 0.88016 0.77667 0.81735 1.90816 1.20789 1.51358 1.70745 1.20435 0.80791 0.77139 0.82299 1.93227 1.75454 1.55532 1.90231 1.93229 1.75439 1.68007 1.77800 1.86595 1.34706 1.69482 1.30797 1.19212 0.88389 0.97677 0.90688 1.21567 0.91623 1.05275 1.02852 1.21044 1.00005 0.96331 0.93508 1.20535 0.95938 1.00772 0.96592 1.24929 1.06534 1.00444 0.86340 1.86501 1.93624 1.26439 1.29101 0.85363 0.75100 0.80963 0.78902 1.18255 1.19722 1.17631 1.21137 0.91396 0.96200 0.98203 1.20772 1.02350 0.99622 0.91827 1.21429 0.98395 0.93850 0.99686 1.21419 0.97215 1.00958 0.92526 0.91447 0.90654 0.91455 0.91175 0.90658 0.90882 0.90888 0.90658 0.91174 0.83982 0.85021 0.88308 0.88295 0.84650 0.84193 0.85006 0.76154 0.82202 0.83004 0.85003 0.83973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.90 8.65 113.37 0.98 2.89 16 2 Si 1.13 -7.59 12.32 68.60 0.85 -6.74 16 3 C -0.46 2.49 8.53 113.37 0.97 3.45 16 4 C -0.46 2.48 8.53 113.37 0.97 3.45 16 5 C -0.37 0.71 4.59 22.27 0.10 0.81 16 6 C -0.10 0.09 9.29 22.27 0.21 0.29 16 7 C -0.12 -0.11 9.70 22.27 0.22 0.11 16 8 C -0.11 -0.21 5.52 -19.87 -0.11 -0.32 16 9 C 0.11 0.13 5.59 71.24 0.40 0.53 16 10 O -0.33 -1.53 10.20 -51.40 -0.52 -2.06 16 11 C 0.47 3.08 7.47 71.23 0.53 3.61 16 12 O -0.45 -4.52 16.25 28.40 0.46 -4.06 16 13 C 0.47 2.98 2.16 71.23 0.15 3.13 16 14 F -0.16 -0.93 15.27 44.97 0.69 -0.25 16 15 F -0.16 -0.96 15.31 44.97 0.69 -0.27 16 16 O -0.30 -2.34 9.60 -73.38 -0.70 -3.05 16 17 C 0.08 0.48 6.48 22.50 0.15 0.62 16 18 C -0.19 -0.85 8.26 22.37 0.18 -0.66 16 19 C -0.09 -0.13 8.66 22.25 0.19 0.06 16 20 C -0.14 0.03 5.35 -19.85 -0.11 -0.08 16 21 C -0.07 0.19 2.80 71.23 0.20 0.39 16 22 O -0.55 0.75 12.83 -148.98 -1.91 -1.16 16 23 Si 0.97 -1.85 25.14 68.60 1.72 -0.12 16 24 H -0.26 0.10 7.11 99.48 0.71 0.80 16 25 H -0.27 -0.42 7.11 99.48 0.71 0.28 16 26 H -0.25 0.44 7.04 99.48 0.70 1.14 16 27 C -0.05 0.02 9.68 22.26 0.22 0.23 16 28 C -0.13 -0.29 9.99 22.37 0.22 -0.07 16 29 C -0.12 -0.10 9.70 22.27 0.22 0.11 16 30 C -0.10 0.09 9.29 22.27 0.21 0.30 16 31 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 32 H 0.07 -0.35 7.96 -2.38 -0.02 -0.37 16 33 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 34 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 35 H 0.07 -0.42 7.96 -2.39 -0.02 -0.43 16 36 H 0.07 -0.42 7.69 -2.38 -0.02 -0.44 16 37 H 0.07 -0.42 7.69 -2.38 -0.02 -0.43 16 38 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 39 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 40 H 0.14 -0.72 7.43 -2.91 -0.02 -0.75 16 41 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16 42 H 0.10 -0.07 8.08 -2.38 -0.02 -0.09 16 43 H 0.10 -0.07 8.08 -2.39 -0.02 -0.09 16 44 H 0.14 0.52 5.10 -2.91 -0.01 0.50 16 45 H 0.14 -0.22 4.86 -2.91 -0.01 -0.24 16 46 H 0.13 -0.66 7.96 -2.39 -0.02 -0.68 16 47 H 0.39 -2.84 8.70 -74.06 -0.64 -3.49 16 48 H 0.16 -0.66 8.06 -2.91 -0.02 -0.68 16 49 H 0.15 -0.07 8.06 -2.91 -0.02 -0.09 16 50 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 51 H 0.14 -0.73 7.43 -2.91 -0.02 -0.75 16 Total: 0.00 -15.02 439.41 8.23 -6.79 By element: Atomic # 1 Polarization: -9.03 SS G_CDS: 1.08 Total: -7.96 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 5.89 Total: 18.87 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -2.68 Total: -10.32 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 1.38 Total: -0.52 kcal Atomic # 14 Polarization: -9.43 SS G_CDS: 2.57 Total: -6.86 kcal Total: -15.02 8.23 -6.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4146828_9435856.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -214.502 kcal (2) G-P(sol) polarization free energy of solvation -15.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds