Wall clock time and date at job start Sat Mar 6 2021 06:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47030 * 2 1 4 4 C 1.50696 * 109.47278 * 239.99675 * 2 1 3 5 5 C 1.38268 * 119.94238 * 119.72540 * 4 2 1 6 6 C 1.38148 * 120.05255 * 179.72402 * 5 4 2 7 7 C 1.38730 * 119.94247 * 0.57453 * 6 5 4 8 8 O 1.35905 * 120.05113 * 179.68140 * 7 6 5 9 9 C 1.42894 * 117.00217 * 0.02562 * 8 7 6 10 10 C 1.50699 * 109.47024 * 180.02562 * 9 8 7 11 11 C 1.36499 * 125.81181 * 89.99748 * 10 9 8 12 12 C 1.47234 * 127.19898 * 359.96736 * 11 10 9 13 13 O 1.21541 * 119.99829 * 359.97438 * 12 11 10 14 14 O 1.34767 * 119.99981 * 180.02562 * 12 11 10 15 15 C 1.45206 * 116.99981 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.46962 * 179.97438 * 15 14 12 17 17 H 1.09002 * 112.84949 * 45.33470 * 16 15 14 18 18 C 1.53785 * 113.61083 * 176.52903 * 16 15 14 19 19 C 1.53774 * 87.08131 * 139.98374 * 18 16 15 20 20 H 1.08998 * 113.61960 * 89.11037 * 19 18 16 21 21 O 1.42902 * 113.61421 * 219.93760 * 19 18 16 22 22 C 1.53777 * 113.61727 * 274.13304 * 16 15 14 23 23 C 1.47052 * 105.60233 * 179.97438 * 11 10 9 24 24 C 1.34162 * 105.94683 * 0.02562 * 23 11 10 25 25 O 1.33631 * 125.80612 * 269.68863 * 10 9 8 26 26 C 1.38728 * 119.89348 * 359.69988 * 7 6 5 27 27 C 1.38153 * 119.93918 * 0.02562 * 26 7 6 28 28 H 0.96700 * 114.00022 * 300.00827 * 1 2 3 29 29 H 1.08997 * 109.46978 * 119.99554 * 2 1 3 30 30 H 1.48506 * 110.00048 * 178.68200 * 3 2 1 31 31 H 1.48502 * 109.99996 * 299.99525 * 3 2 1 32 32 H 1.07998 * 119.97204 * 359.97438 * 5 4 2 33 33 H 1.08006 * 120.02667 * 180.25271 * 6 5 4 34 34 H 1.09003 * 109.47358 * 299.99752 * 9 8 7 35 35 H 1.08997 * 109.47186 * 59.99912 * 9 8 7 36 36 H 1.09004 * 109.47044 * 300.00131 * 15 14 12 37 37 H 1.09005 * 109.47035 * 59.99457 * 15 14 12 38 38 H 1.09005 * 113.61114 * 254.52946 * 18 16 15 39 39 H 1.08997 * 113.61448 * 25.43453 * 18 16 15 40 40 H 0.96699 * 113.99575 * 179.97438 * 21 19 18 41 41 H 1.09008 * 113.61302 * 334.57321 * 22 16 15 42 42 H 1.09006 * 113.61311 * 105.46988 * 22 16 15 43 43 H 1.08003 * 127.02897 * 179.97438 * 23 11 10 44 44 H 1.08002 * 125.42397 * 179.97438 * 24 23 11 45 45 H 1.07999 * 120.03497 * 179.97438 * 26 7 6 46 46 H 1.08000 * 119.96925 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7216 -0.0357 -2.1426 6 6 3.1880 -0.6864 -3.2684 7 6 2.8532 -2.0145 -3.4893 8 8 3.3055 -2.6549 -4.5994 9 6 4.1222 -1.8998 -5.4965 10 6 4.5257 -2.7682 -6.6601 11 6 3.8357 -2.9077 -7.8296 12 6 2.5704 -2.2524 -8.2003 13 8 2.0294 -1.4916 -7.4221 14 8 2.0118 -2.4970 -9.4021 15 6 0.7640 -1.8167 -9.6997 16 6 0.2865 -2.2154 -11.0976 17 1 0.3552 -3.2882 -11.2783 18 6 -1.0761 -1.6126 -11.4783 19 6 -0.4962 -1.3903 -12.8851 20 1 -0.6409 -2.2371 -13.5559 21 8 -0.8801 -0.1453 -13.4723 22 6 0.8933 -1.3610 -12.2229 23 6 4.6204 -3.8496 -8.6418 24 6 5.6860 -4.1799 -7.8966 25 8 5.6230 -3.5281 -6.7250 26 6 2.0556 -2.6876 -2.5754 27 6 1.5963 -2.0340 -1.4482 28 1 -0.3933 0.4418 0.7650 29 1 1.7923 -0.5138 0.8900 30 1 3.5346 1.7703 0.0321 31 1 1.5616 2.4679 -1.2086 32 1 2.9776 0.9996 -1.9728 33 1 3.8086 -0.1602 -3.9787 34 1 3.5608 -1.0401 -5.8627 35 1 5.0141 -1.5552 -4.9733 36 1 0.0113 -2.0996 -8.9638 37 1 0.9204 -0.7385 -9.6633 38 1 -1.8945 -2.3321 -11.4521 39 1 -1.3072 -0.6876 -10.9501 40 1 -0.5181 0.0004 -14.3570 41 1 1.2016 -0.3670 -11.8986 42 1 1.6626 -1.8776 -12.7970 43 1 4.3863 -4.2038 -9.6349 44 1 6.4717 -4.8587 -8.1939 45 1 1.7931 -3.7214 -2.7453 46 1 0.9750 -2.5575 -0.7366 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4549110_11354868.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:32:23 Heat of formation + Delta-G solvation = -121.278364 kcal Electronic energy + Delta-G solvation = -31274.252164 eV Core-core repulsion = 26678.357049 eV Total energy + Delta-G solvation = -4595.895115 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.138 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.90611 -41.57463 -41.43322 -40.25341 -39.28850 -37.74400 -37.26898 -36.03569 -34.36967 -33.08716 -32.17949 -31.62832 -29.96182 -28.09949 -26.80752 -26.25208 -25.35511 -24.02849 -23.46590 -22.65100 -22.31438 -21.19324 -20.54568 -19.69999 -19.36311 -18.68194 -18.41142 -18.21725 -17.81828 -17.51453 -17.20802 -17.11039 -16.80762 -16.68834 -16.41907 -15.98931 -15.72535 -15.53106 -15.18779 -15.10024 -14.70784 -14.52607 -14.17370 -14.13908 -13.97094 -13.90798 -13.79573 -13.53493 -13.50587 -13.34508 -12.84301 -12.58619 -12.48279 -12.32304 -12.25886 -12.13262 -11.94103 -11.82692 -11.73008 -11.29375 -11.15254 -10.78631 -10.32352 -10.23055 -10.02998 -9.38588 -4.96645 -0.38314 0.06587 0.12136 0.82876 1.17141 1.29711 1.50159 1.61910 1.71158 1.95924 2.23577 2.45587 3.15443 3.15963 3.33489 3.37366 3.42037 3.47451 3.51678 3.58031 3.67211 3.74598 3.79677 3.88389 3.88992 3.93456 4.08906 4.09458 4.13036 4.24695 4.27123 4.32938 4.38248 4.44868 4.54564 4.61655 4.69155 4.69350 4.73923 4.76274 4.92268 4.98021 5.04051 5.05094 5.11998 5.15908 5.31138 5.33040 5.50750 5.72053 6.06476 6.44942 6.85032 6.92072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.073 4.073 3 Si 0.773 3.227 4 C -0.127 4.127 5 C -0.099 4.099 6 C -0.206 4.206 7 C 0.124 3.876 8 O -0.317 6.317 9 C 0.129 3.871 10 C 0.061 3.939 11 C -0.217 4.217 12 C 0.536 3.464 13 O -0.532 6.532 14 O -0.342 6.342 15 C 0.077 3.923 16 C -0.103 4.103 17 H 0.120 0.880 18 C -0.125 4.125 19 C 0.077 3.923 20 H 0.106 0.894 21 O -0.583 6.583 22 C -0.162 4.162 23 C -0.182 4.182 24 C -0.006 4.006 25 O -0.166 6.166 26 C -0.155 4.155 27 C -0.053 4.053 28 H 0.404 0.596 29 H 0.098 0.902 30 H -0.286 1.286 31 H -0.302 1.302 32 H 0.123 0.877 33 H 0.145 0.855 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.396 0.604 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.188 0.812 44 H 0.261 0.739 45 H 0.145 0.855 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.663 -1.960 -0.437 3.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.183 4.183 3 Si 0.679 3.321 4 C -0.128 4.128 5 C -0.117 4.117 6 C -0.224 4.224 7 C 0.079 3.921 8 O -0.232 6.232 9 C 0.055 3.945 10 C 0.008 3.992 11 C -0.220 4.220 12 C 0.383 3.617 13 O -0.424 6.424 14 O -0.258 6.258 15 C 0.004 3.996 16 C -0.121 4.121 17 H 0.138 0.862 18 C -0.162 4.162 19 C 0.019 3.981 20 H 0.123 0.877 21 O -0.391 6.391 22 C -0.200 4.200 23 C -0.201 4.201 24 C -0.071 4.071 25 O -0.061 6.061 26 C -0.174 4.174 27 C -0.071 4.071 28 H 0.255 0.745 29 H 0.116 0.884 30 H -0.214 1.214 31 H -0.230 1.230 32 H 0.140 0.860 33 H 0.163 0.837 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.246 0.754 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.205 0.795 44 H 0.276 0.724 45 H 0.162 0.838 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.902 -1.610 -0.491 3.355 hybrid contribution 0.237 -0.138 -1.063 1.097 sum 3.139 -1.748 -1.553 3.914 Atomic orbital electron populations 1.86446 1.17247 1.82366 1.51431 1.24740 0.85839 1.10693 0.97013 0.94496 0.77306 0.75569 0.84686 1.19689 1.00457 0.95249 0.97371 1.20830 0.97993 0.98833 0.94026 1.21324 1.06172 0.94270 1.00680 1.19109 0.94973 0.91470 0.86564 1.86049 1.65284 1.40288 1.31561 1.21200 0.95882 0.91138 0.86263 1.21945 0.86724 0.95253 0.95249 1.20467 0.96765 1.07001 0.97730 1.20194 0.83718 0.78198 0.79604 1.90857 1.63419 1.36300 1.51809 1.86534 1.39241 1.65766 1.34301 1.23249 0.82134 0.96434 0.97824 1.22360 0.96750 1.01920 0.91065 0.86226 1.23101 0.96332 1.01549 0.95257 1.23416 0.93863 0.87078 0.93769 0.87683 1.86488 1.76447 1.38701 1.37469 1.23776 0.98364 1.00251 0.97568 1.23241 0.94851 0.99272 1.02714 1.25015 1.01950 0.98320 0.81854 1.83830 1.37832 1.46465 1.38002 1.20753 1.00378 1.01792 0.94430 1.21046 0.96444 0.93459 0.96108 0.74521 0.88425 1.21383 1.22981 0.86007 0.83695 0.87686 0.87414 0.91074 0.91455 0.88929 0.90062 0.75370 0.90403 0.89594 0.79515 0.72350 0.83758 0.82963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.67 12.74 -148.98 -1.90 -2.57 16 2 C -0.07 -0.07 2.81 71.23 0.20 0.13 16 3 Si 0.77 -0.32 29.78 68.60 2.04 1.73 16 4 C -0.13 -0.93 5.42 -19.85 -0.11 -1.03 16 5 C -0.10 -0.85 8.66 22.26 0.19 -0.66 16 6 C -0.21 -1.74 9.04 22.37 0.20 -1.54 16 7 C 0.12 1.24 6.69 22.50 0.15 1.39 16 8 O -0.32 -3.37 10.12 -92.48 -0.94 -4.31 16 9 C 0.13 0.81 4.74 71.24 0.34 1.15 16 10 C 0.06 0.39 7.01 25.28 0.18 0.57 16 11 C -0.22 -1.48 6.32 -19.01 -0.12 -1.60 16 12 C 0.54 5.50 7.95 70.19 0.56 6.05 16 13 O -0.53 -8.06 14.64 19.70 0.29 -7.77 16 14 O -0.34 -2.34 10.13 -56.78 -0.58 -2.91 16 15 C 0.08 0.33 5.30 71.98 0.38 0.71 16 16 C -0.10 0.07 4.01 -10.27 -0.04 0.02 16 17 H 0.12 -0.35 8.14 -2.39 -0.02 -0.37 16 18 C -0.12 0.03 7.47 31.12 0.23 0.27 16 19 C 0.08 -0.11 5.21 31.18 0.16 0.05 16 20 H 0.11 -0.57 8.14 -2.39 -0.02 -0.59 16 21 O -0.58 -1.01 13.68 -148.98 -2.04 -3.05 16 22 C -0.16 0.17 7.48 31.18 0.23 0.41 16 23 C -0.18 0.02 11.05 23.65 0.26 0.28 16 24 C -0.01 0.02 12.03 66.89 0.80 0.82 16 25 O -0.17 -0.49 10.52 4.61 0.05 -0.44 16 26 C -0.16 -1.28 9.99 22.37 0.22 -1.06 16 27 C -0.05 -0.35 9.60 22.25 0.21 -0.14 16 28 H 0.40 -3.90 8.74 -74.06 -0.65 -4.55 16 29 H 0.10 -0.36 7.96 -2.39 -0.02 -0.38 16 30 H -0.29 -1.29 7.11 99.48 0.71 -0.59 16 31 H -0.30 -2.39 7.11 99.48 0.71 -1.68 16 32 H 0.12 0.87 4.87 -2.91 -0.01 0.86 16 33 H 0.15 0.62 6.30 -2.91 -0.02 0.60 16 34 H 0.11 0.80 6.01 -2.39 -0.01 0.78 16 35 H 0.11 0.12 7.66 -2.39 -0.02 0.10 16 36 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 37 H 0.07 0.38 7.87 -2.38 -0.02 0.36 16 38 H 0.09 -0.23 8.14 -2.38 -0.02 -0.25 16 39 H 0.08 0.20 8.10 -2.39 -0.02 0.18 16 40 H 0.40 -2.64 9.12 -74.06 -0.68 -3.31 16 41 H 0.08 0.13 7.92 -2.38 -0.02 0.11 16 42 H 0.09 -0.28 8.14 -2.38 -0.02 -0.29 16 43 H 0.19 -0.88 8.06 -2.91 -0.02 -0.90 16 44 H 0.26 -3.43 8.06 -2.91 -0.02 -3.46 16 45 H 0.14 0.79 8.06 -2.91 -0.02 0.76 16 46 H 0.15 0.39 8.06 -2.91 -0.02 0.37 16 Total: 0.00 -26.14 394.11 0.75 -25.39 By element: Atomic # 1 Polarization: -11.65 SS G_CDS: -0.24 Total: -11.90 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 4.06 Total: 5.83 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -5.11 Total: -21.05 kcal Atomic # 14 Polarization: -0.32 SS G_CDS: 2.04 Total: 1.73 kcal Total: -26.14 0.75 -25.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4549110_11354868.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.889 kcal (2) G-P(sol) polarization free energy of solvation -26.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds