Wall clock time and date at job start Sat Mar 6 2021 07:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86294 * 109.47343 * 2 1 4 4 C 1.50701 * 109.47126 * 120.00325 * 2 1 3 5 5 C 1.38268 * 119.94670 * 64.99597 * 4 2 1 6 6 C 1.38136 * 120.05675 * 180.02562 * 5 4 2 7 7 C 1.38737 * 119.94594 * 359.97438 * 6 5 4 8 8 O 1.35902 * 120.05436 * 179.97438 * 7 6 5 9 9 C 1.42904 * 116.99570 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.46769 * 180.02562 * 9 8 7 11 11 C 1.36497 * 125.80988 * 90.00012 * 10 9 8 12 12 C 1.47236 * 127.20084 * 359.96218 * 11 10 9 13 13 O 1.21536 * 119.99774 * 359.97438 * 12 11 10 14 14 O 1.34768 * 119.99740 * 179.97438 * 12 11 10 15 15 C 1.45196 * 116.99741 * 179.97438 * 14 12 11 16 16 C 1.53004 * 109.47161 * 179.97438 * 15 14 12 17 17 H 1.09002 * 109.46782 * 55.00740 * 16 15 14 18 18 C 1.53001 * 109.47147 * 175.00218 * 16 15 14 19 19 C 1.53004 * 109.47178 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.46989 * 300.00126 * 19 18 16 21 21 H 1.09002 * 109.47359 * 300.00023 * 20 19 18 22 22 O 1.42897 * 109.47018 * 180.02562 * 20 19 18 23 23 C 1.53001 * 109.47263 * 59.99926 * 20 19 18 24 24 C 1.52998 * 109.47328 * 295.00532 * 16 15 14 25 25 C 1.47058 * 105.59768 * 179.97438 * 11 10 9 26 26 C 1.34160 * 105.95000 * 359.97438 * 25 11 10 27 27 O 1.33630 * 125.80672 * 270.24096 * 10 9 8 28 28 C 1.38732 * 119.88562 * 0.27617 * 7 6 5 29 29 C 1.38145 * 119.94211 * 359.47015 * 28 7 6 30 30 H 0.96703 * 114.00228 * 59.99895 * 1 2 3 31 31 H 1.09002 * 109.47133 * 240.00116 * 2 1 3 32 32 H 1.48505 * 110.00128 * 60.00136 * 3 2 1 33 33 H 1.48506 * 110.00198 * 181.31797 * 3 2 1 34 34 H 1.07999 * 119.96720 * 0.02784 * 5 4 2 35 35 H 1.08001 * 120.02972 * 179.97438 * 6 5 4 36 36 H 1.08994 * 109.47223 * 60.00123 * 9 8 7 37 37 H 1.08999 * 109.47126 * 299.99927 * 9 8 7 38 38 H 1.08996 * 109.47922 * 300.00727 * 15 14 12 39 39 H 1.09005 * 109.47014 * 60.00323 * 15 14 12 40 40 H 1.09000 * 109.47566 * 300.00628 * 18 16 15 41 41 H 1.09000 * 109.47418 * 60.00064 * 18 16 15 42 42 H 1.09002 * 109.47089 * 60.00314 * 19 18 16 43 43 H 1.09000 * 109.46892 * 180.02562 * 19 18 16 44 44 H 0.96699 * 113.99849 * 179.97438 * 22 20 19 45 45 H 1.09002 * 109.46854 * 59.99788 * 23 20 19 46 46 H 1.08995 * 109.47167 * 179.97438 * 23 20 19 47 47 H 1.08994 * 109.47029 * 299.99823 * 24 16 15 48 48 H 1.08991 * 109.47149 * 59.99861 * 24 16 15 49 49 H 1.07998 * 127.02763 * 180.02562 * 25 11 10 50 50 H 1.08002 * 125.42521 * 179.97438 * 26 25 11 51 51 H 1.08004 * 120.02610 * 179.71518 * 28 7 6 52 52 H 1.08005 * 119.96664 * 180.22689 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.6839 -2.0606 1.3972 6 6 2.1429 -2.7140 2.5244 7 6 2.8530 -2.0145 3.4894 8 8 3.3051 -2.6551 4.5995 9 6 4.0283 -1.8717 5.5511 10 6 4.4472 -2.7448 6.7057 11 6 5.6152 -3.4455 6.7945 12 6 6.6987 -3.4996 5.7991 13 8 6.6029 -2.8733 4.7619 14 8 7.7967 -4.2436 6.0380 15 6 8.8243 -4.2505 5.0123 16 6 9.9845 -5.1427 5.4585 17 1 9.6064 -6.1357 5.7015 18 6 11.0095 -5.2499 4.3277 19 6 12.1694 -6.1426 4.7737 20 6 12.8351 -5.5343 6.0097 21 1 13.2135 -4.5413 5.7669 22 8 13.9187 -6.3677 6.4258 23 6 11.8100 -5.4270 7.1404 24 6 10.6501 -4.5338 6.6943 25 6 5.5648 -4.1354 8.0923 26 6 4.3941 -3.7893 8.6485 27 8 3.7363 -2.9684 7.8149 28 6 3.0954 -0.6588 3.3222 29 6 2.6388 -0.0112 2.1906 30 1 -0.3934 0.4417 -0.7650 31 1 1.7923 -0.5138 -0.8900 32 1 1.5615 2.4679 1.2085 33 1 3.5346 1.7702 -0.0321 34 1 1.1314 -2.6047 0.6455 35 1 1.9490 -3.7685 2.6544 36 1 3.3922 -1.0657 5.9167 37 1 4.9135 -1.4490 5.0759 38 1 8.4066 -4.6352 4.0819 39 1 9.1874 -3.2348 4.8548 40 1 10.5354 -5.6837 3.4473 41 1 11.3876 -4.2569 4.0846 42 1 11.7910 -7.1357 5.0165 43 1 12.8998 -6.2186 3.9683 44 1 14.3880 -6.0422 7.2061 45 1 11.4317 -6.4200 7.3832 46 1 12.2844 -4.9940 8.0210 47 1 11.0281 -3.5408 6.4512 48 1 9.9198 -4.4574 7.4997 49 1 6.3170 -4.7868 8.5122 50 1 4.0357 -4.1224 9.6114 51 1 3.6440 -0.1111 4.0742 52 1 2.8305 1.0435 2.0583 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4549110_16737258.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:33:22 Heat of formation + Delta-G solvation = -162.620208 kcal Electronic energy + Delta-G solvation = -35481.872823 eV Core-core repulsion = 30573.109753 eV Total energy + Delta-G solvation = -4908.763070 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.170 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -43.90004 -41.54439 -41.42020 -40.07463 -39.28262 -37.90807 -37.26673 -36.60525 -34.37233 -33.07998 -32.18001 -31.97434 -31.86085 -31.61691 -28.38319 -26.95490 -26.18561 -24.96593 -24.01127 -23.82668 -22.80535 -22.34825 -22.18491 -21.17541 -20.80168 -19.69295 -19.36623 -18.41369 -18.31337 -18.18506 -17.79381 -17.56838 -17.23502 -17.06996 -16.83023 -16.73992 -16.42989 -15.95153 -15.70496 -15.54622 -15.43749 -15.21972 -14.90841 -14.58957 -14.57211 -14.39401 -14.07309 -14.01964 -13.98586 -13.90731 -13.68496 -13.59904 -13.25932 -13.23127 -13.14820 -12.61595 -12.56970 -12.37811 -12.17868 -12.07287 -12.00995 -11.91609 -11.80153 -11.70303 -11.57709 -11.16272 -11.12418 -10.74186 -10.30626 -10.22496 -10.02645 -9.39808 -4.96586 -0.36838 0.07241 0.12553 0.83630 1.19628 1.29573 1.52938 1.62518 1.72853 1.95208 2.24524 2.45755 3.15905 3.16638 3.36753 3.39797 3.49191 3.53892 3.57733 3.67753 3.68606 3.72681 3.76948 3.89446 3.94596 3.99661 4.09907 4.10798 4.18956 4.26630 4.27549 4.30519 4.33710 4.37922 4.42133 4.42910 4.44096 4.54735 4.56991 4.69323 4.76727 4.76805 4.90965 4.98364 5.00710 5.03449 5.04693 5.11155 5.13157 5.15633 5.18192 5.27960 5.31598 5.40074 5.51009 5.72864 6.07139 6.48189 6.84025 6.92172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.073 4.073 3 Si 0.772 3.228 4 C -0.128 4.128 5 C -0.053 4.053 6 C -0.155 4.155 7 C 0.124 3.876 8 O -0.318 6.318 9 C 0.130 3.870 10 C 0.060 3.940 11 C -0.216 4.216 12 C 0.538 3.462 13 O -0.530 6.530 14 O -0.343 6.343 15 C 0.070 3.930 16 C -0.081 4.081 17 H 0.083 0.917 18 C -0.106 4.106 19 C -0.112 4.112 20 C 0.100 3.900 21 H 0.061 0.939 22 O -0.590 6.590 23 C -0.145 4.145 24 C -0.109 4.109 25 C -0.182 4.182 26 C -0.007 4.007 27 O -0.167 6.167 28 C -0.206 4.206 29 C -0.098 4.098 30 H 0.403 0.597 31 H 0.095 0.905 32 H -0.296 1.296 33 H -0.291 1.291 34 H 0.153 0.847 35 H 0.144 0.856 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.393 0.607 45 H 0.064 0.936 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.186 0.814 50 H 0.259 0.741 51 H 0.146 0.854 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.183 1.601 0.690 1.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.183 4.183 3 Si 0.679 3.321 4 C -0.128 4.128 5 C -0.071 4.071 6 C -0.174 4.174 7 C 0.079 3.921 8 O -0.232 6.232 9 C 0.055 3.945 10 C 0.007 3.993 11 C -0.218 4.218 12 C 0.384 3.616 13 O -0.422 6.422 14 O -0.259 6.259 15 C -0.003 4.003 16 C -0.100 4.100 17 H 0.101 0.899 18 C -0.143 4.143 19 C -0.149 4.149 20 C 0.042 3.958 21 H 0.079 0.921 22 O -0.398 6.398 23 C -0.183 4.183 24 C -0.147 4.147 25 C -0.201 4.201 26 C -0.073 4.073 27 O -0.063 6.063 28 C -0.224 4.224 29 C -0.116 4.116 30 H 0.254 0.746 31 H 0.113 0.887 32 H -0.224 1.224 33 H -0.219 1.219 34 H 0.171 0.829 35 H 0.162 0.838 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.243 0.757 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.204 0.796 50 H 0.275 0.725 51 H 0.164 0.836 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.275 1.613 0.943 1.888 hybrid contribution 0.677 -0.102 0.791 1.046 sum 0.952 1.511 1.734 2.489 Atomic orbital electron populations 1.86444 1.17168 1.82379 1.51392 1.24733 0.85879 1.10728 0.96959 0.94479 0.77241 0.75705 0.84693 1.19674 1.01191 0.94943 0.96985 1.21059 0.96101 0.93456 0.96485 1.20746 1.01384 1.01501 0.93740 1.19112 0.94788 0.91270 0.86880 1.86054 1.69079 1.38588 1.29490 1.21212 0.98478 0.90894 0.83885 1.21970 0.89960 0.99057 0.88272 1.20472 0.95741 1.07083 0.98546 1.20118 0.81330 0.75765 0.84346 1.90848 1.80044 1.43737 1.27557 1.86527 1.27657 1.63654 1.48065 1.23331 0.86117 1.01681 0.89204 1.21221 0.92763 0.99296 0.96693 0.89852 1.21441 0.94575 1.01006 0.97292 1.21446 0.97166 0.99476 0.96859 1.21909 0.86383 0.93354 0.94193 0.92076 1.86481 1.47802 1.53577 1.51973 1.22213 0.96710 1.00753 0.98609 1.21511 0.97128 0.98887 0.97147 1.23231 1.00559 1.03760 0.92537 1.24995 0.92230 0.92853 0.97186 1.83831 1.43826 1.53768 1.24835 1.21327 1.06421 0.93821 1.00861 1.20853 0.98027 0.99000 0.93722 0.74551 0.88693 1.22401 1.21882 0.82936 0.83782 0.87650 0.87378 0.91114 0.90747 0.90203 0.90524 0.91709 0.91159 0.75700 0.91691 0.90457 0.91300 0.91049 0.79627 0.72504 0.83643 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.35 12.81 -148.98 -1.91 -2.26 16 2 C -0.07 -0.06 2.79 71.24 0.20 0.14 16 3 Si 0.77 -0.53 29.85 68.60 2.05 1.52 16 4 C -0.13 -0.88 5.39 -19.85 -0.11 -0.99 16 5 C -0.05 -0.33 9.68 22.25 0.22 -0.11 16 6 C -0.16 -1.22 9.99 22.36 0.22 -0.99 16 7 C 0.12 1.19 6.69 22.51 0.15 1.34 16 8 O -0.32 -3.22 10.12 -92.45 -0.94 -4.16 16 9 C 0.13 0.74 4.74 71.24 0.34 1.08 16 10 C 0.06 0.36 7.01 25.28 0.18 0.53 16 11 C -0.22 -1.31 6.32 -19.00 -0.12 -1.43 16 12 C 0.54 4.70 7.95 70.19 0.56 5.25 16 13 O -0.53 -6.96 14.64 19.72 0.29 -6.67 16 14 O -0.34 -1.80 9.68 -56.79 -0.55 -2.35 16 15 C 0.07 0.14 4.85 71.98 0.35 0.49 16 16 C -0.08 0.11 2.43 -10.79 -0.03 0.08 16 17 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 18 C -0.11 0.26 5.20 30.60 0.16 0.42 16 19 C -0.11 0.02 5.57 30.60 0.17 0.19 16 20 C 0.10 -0.06 3.47 30.59 0.11 0.04 16 21 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 22 O -0.59 -1.17 13.32 -148.98 -1.98 -3.16 16 23 C -0.15 0.34 5.55 30.61 0.17 0.51 16 24 C -0.11 0.24 5.11 30.61 0.16 0.39 16 25 C -0.18 0.07 11.05 23.65 0.26 0.33 16 26 C -0.01 0.02 12.03 66.89 0.80 0.83 16 27 O -0.17 -0.50 10.52 4.65 0.05 -0.45 16 28 C -0.21 -1.63 9.04 22.37 0.20 -1.43 16 29 C -0.10 -0.81 8.66 22.25 0.19 -0.61 16 30 H 0.40 -4.09 8.74 -74.06 -0.65 -4.74 16 31 H 0.10 -0.33 7.96 -2.39 -0.02 -0.35 16 32 H -0.30 -1.95 7.05 99.48 0.70 -1.25 16 33 H -0.29 -1.50 7.11 99.48 0.71 -0.80 16 34 H 0.15 0.29 8.06 -2.91 -0.02 0.27 16 35 H 0.14 0.73 8.06 -2.91 -0.02 0.71 16 36 H 0.11 0.11 7.65 -2.39 -0.02 0.09 16 37 H 0.11 0.69 6.02 -2.39 -0.01 0.67 16 38 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.07 0.14 8.14 -2.38 -0.02 0.12 16 40 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 42 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 43 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 44 H 0.39 -2.32 9.08 -74.06 -0.67 -2.99 16 45 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 46 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 47 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 48 H 0.07 -0.09 7.82 -2.39 -0.02 -0.10 16 49 H 0.19 -0.88 8.06 -2.91 -0.02 -0.90 16 50 H 0.26 -3.33 8.06 -2.91 -0.02 -3.36 16 51 H 0.15 0.53 6.30 -2.91 -0.02 0.51 16 52 H 0.12 0.83 4.86 -2.91 -0.01 0.81 16 Total: 0.00 -24.72 428.81 0.86 -23.86 By element: Atomic # 1 Polarization: -12.08 SS G_CDS: -0.32 Total: -12.41 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 4.18 Total: 6.07 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -5.04 Total: -19.05 kcal Atomic # 14 Polarization: -0.53 SS G_CDS: 2.05 Total: 1.52 kcal Total: -24.72 0.86 -23.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4549110_16737258.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.760 kcal (2) G-P(sol) polarization free energy of solvation -24.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds