Wall clock time and date at job start Sat Mar 6 2021 08:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00394 * 2 1 4 4 C 1.53010 * 112.84757 * 65.99039 * 3 2 1 5 5 F 1.39902 * 109.46971 * 283.52518 * 4 3 2 6 6 F 1.39895 * 109.46696 * 43.52465 * 4 3 2 7 7 F 1.39897 * 109.46933 * 163.52444 * 4 3 2 8 8 C 1.53785 * 113.61659 * 294.80023 * 3 2 1 9 9 C 1.53788 * 87.07882 * 270.79704 * 8 3 2 10 10 H 1.08993 * 113.61247 * 219.93823 * 9 8 3 11 11 C 1.52994 * 113.61742 * 89.11378 * 9 8 3 12 12 O 1.45194 * 109.47287 * 176.53335 * 11 9 8 13 13 C 1.34772 * 116.99980 * 180.02562 * 12 11 9 14 14 O 1.21534 * 120.00268 * 359.97438 * 13 12 11 15 15 C 1.47237 * 119.99934 * 179.97438 * 13 12 11 16 16 C 1.36496 * 127.19896 * 179.97438 * 15 13 12 17 17 C 1.50693 * 125.81033 * 359.96656 * 16 15 13 18 18 O 1.42907 * 109.47309 * 89.99700 * 17 16 15 19 19 C 1.35897 * 116.99768 * 180.02562 * 18 17 16 20 20 C 1.38733 * 120.05091 * 180.02562 * 19 18 17 21 21 C 1.38151 * 119.94341 * 179.97438 * 20 19 18 22 22 C 1.38265 * 120.05593 * 359.97438 * 21 20 19 23 23 C 1.50701 * 119.94743 * 179.97438 * 22 21 20 24 24 O 1.42901 * 109.46896 * 300.00710 * 23 22 21 25 25 Si 1.86299 * 109.47131 * 180.02562 * 23 22 21 26 26 C 1.38268 * 120.10915 * 0.27791 * 22 21 20 27 27 C 1.38150 * 120.05741 * 359.45116 * 26 22 21 28 28 O 1.33627 * 108.38235 * 180.22364 * 16 15 13 29 29 C 1.34219 * 110.92505 * 359.62024 * 28 16 15 30 30 C 1.34161 * 109.14176 * 0.38676 * 29 28 16 31 31 C 1.53793 * 87.16988 * 334.52245 * 9 8 3 32 32 H 1.09000 * 109.47541 * 182.52435 * 1 2 3 33 33 H 1.09006 * 109.47025 * 302.52818 * 1 2 3 34 34 H 1.09007 * 109.47232 * 62.52750 * 1 2 3 35 35 H 1.08996 * 113.61635 * 156.25135 * 8 3 2 36 36 H 1.08995 * 113.61293 * 25.33909 * 8 3 2 37 37 H 1.09003 * 109.47015 * 56.52523 * 11 9 8 38 38 H 1.09008 * 109.47107 * 296.53340 * 11 9 8 39 39 H 1.08996 * 109.47574 * 329.99741 * 17 16 15 40 40 H 1.09007 * 109.47229 * 209.99508 * 17 16 15 41 41 H 1.07996 * 120.03233 * 359.95723 * 20 19 18 42 42 H 1.08000 * 119.97494 * 179.97438 * 21 20 19 43 43 H 1.08997 * 109.46453 * 60.00272 * 23 22 21 44 44 H 0.96704 * 113.99990 * 299.99360 * 24 23 22 45 45 H 1.48501 * 109.99706 * 179.97438 * 25 23 22 46 46 H 1.48503 * 110.00185 * 301.32011 * 25 23 22 47 47 H 1.08003 * 119.97283 * 179.72152 * 26 22 21 48 48 H 1.07997 * 120.02843 * 180.27561 * 27 26 22 49 49 H 1.08001 * 125.43009 * 180.15657 * 29 28 16 50 50 H 1.08000 * 127.02463 * 179.74276 * 30 29 28 51 51 H 1.09001 * 113.61223 * 140.02362 * 31 9 8 52 52 H 1.08998 * 113.61531 * 270.92389 * 31 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7278 2.0815 1.2880 5 9 0.4114 2.5547 1.2682 6 9 1.9032 1.2368 2.3893 7 9 2.6106 3.1625 1.3842 8 6 1.7209 2.1086 -1.2791 9 6 2.9980 1.4842 -1.8659 10 1 3.5935 2.1809 -2.4557 11 6 2.7564 0.1543 -2.5827 12 8 3.9999 -0.3121 -3.1696 13 6 3.9591 -1.4790 -3.8425 14 8 2.9129 -2.0904 -3.9359 15 6 5.1820 -2.0133 -4.4646 16 6 5.3081 -3.1723 -5.1745 17 6 4.2012 -4.1522 -5.4667 18 8 3.5629 -3.7974 -6.6950 19 6 2.5348 -4.5854 -7.1061 20 6 1.8704 -4.2993 -8.2899 21 6 0.8259 -5.1021 -8.7059 22 6 0.4429 -6.1903 -7.9438 23 6 -0.6972 -7.0642 -8.3996 24 8 -1.8866 -6.2791 -8.5042 25 14 -0.9634 -8.4325 -7.1636 26 6 1.1001 -6.4746 -6.7609 27 6 2.1488 -5.6781 -6.3434 28 8 6.5814 -3.2930 -5.5615 29 6 7.3113 -2.2481 -5.1409 30 6 6.5230 -1.4100 -4.4510 31 6 3.4927 1.3229 -0.4186 32 1 -0.3634 -1.0266 0.0453 33 1 -0.3633 0.5526 0.8665 34 1 -0.3634 0.4741 -0.9118 35 1 1.7863 3.1878 -1.1412 36 1 0.8094 1.8007 -1.7912 37 1 2.0140 0.2947 -3.3683 38 1 2.3932 -0.5835 -1.8672 39 1 3.4712 -4.1276 -4.6576 40 1 4.6174 -5.1562 -5.5502 41 1 2.1692 -3.4495 -8.8856 42 1 0.3081 -4.8796 -9.6272 43 1 -0.4588 -7.4941 -9.3724 44 1 -2.1589 -5.8650 -7.6738 45 1 -2.0856 -9.3009 -7.6014 46 1 0.2766 -9.2370 -7.0215 47 1 0.7962 -7.3225 -6.1651 48 1 2.6647 -5.9031 -5.4216 49 1 8.3661 -2.1065 -5.3250 50 1 6.8139 -0.4820 -3.9812 51 1 4.0104 0.3812 -0.2365 52 1 4.0415 2.1878 -0.0459 There are 81 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 81 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4549110_17321610.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:15:17 Heat of formation + Delta-G solvation = -252.260256 kcal Electronic energy + Delta-G solvation = -44271.914740 eV Core-core repulsion = 37950.902659 eV Total energy + Delta-G solvation = -6321.012081 eV No. of doubly occupied orbitals = 81 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 443.141 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -51.25859 -48.79051 -48.72876 -43.81697 -41.75563 -41.32575 -40.89808 -39.26147 -37.82895 -37.18845 -36.88178 -34.28021 -32.92330 -32.00677 -31.43019 -30.79791 -28.43352 -28.09975 -27.34411 -26.78009 -26.19451 -25.00546 -23.83771 -23.34837 -22.63576 -22.33292 -21.08712 -20.56208 -19.81505 -19.55112 -19.53881 -19.25978 -19.22551 -18.38514 -18.03454 -17.66514 -17.31480 -17.24216 -17.01320 -16.97988 -16.71067 -16.48693 -16.31231 -15.96619 -15.86890 -15.67150 -15.65948 -15.60590 -15.40736 -15.20467 -15.06725 -14.90696 -14.82814 -14.70994 -14.65573 -14.41616 -14.35745 -14.18424 -13.90947 -13.78929 -13.63303 -13.54345 -13.32634 -13.18288 -13.15142 -12.73967 -12.38011 -12.25776 -12.20092 -12.07310 -12.04167 -11.75608 -11.73630 -11.70427 -11.58514 -11.07234 -10.79947 -10.42113 -10.07050 -9.94369 -9.25859 -4.99657 -0.27117 0.25053 0.28072 0.91493 1.26484 1.33010 1.52849 1.59480 1.62863 1.82049 1.96036 2.08128 2.36101 2.55934 2.62444 2.63372 2.87555 3.24947 3.26585 3.29632 3.43350 3.54252 3.54618 3.62970 3.67866 3.77047 3.82331 3.88608 3.92175 4.06074 4.21703 4.23847 4.25285 4.27900 4.34201 4.40296 4.42615 4.43699 4.49915 4.50802 4.55290 4.64085 4.64701 4.68758 4.76666 4.78586 4.82754 4.94209 4.99803 5.12490 5.22892 5.23513 5.27150 5.46593 5.66503 5.70638 5.80841 6.22481 6.56940 6.77975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.348 6.348 3 C 0.032 3.968 4 C 0.434 3.566 5 F -0.184 7.184 6 F -0.188 7.188 7 F -0.175 7.175 8 C -0.134 4.134 9 C -0.092 4.092 10 H 0.123 0.877 11 C 0.077 3.923 12 O -0.343 6.343 13 C 0.539 3.461 14 O -0.525 6.525 15 C -0.216 4.216 16 C 0.061 3.939 17 C 0.130 3.870 18 O -0.322 6.322 19 C 0.124 3.876 20 C -0.161 4.161 21 C -0.058 4.058 22 C -0.160 4.160 23 C -0.069 4.069 24 O -0.557 6.557 25 Si 0.773 3.227 26 C -0.077 4.077 27 C -0.204 4.204 28 O -0.169 6.169 29 C -0.011 4.011 30 C -0.183 4.183 31 C -0.111 4.111 32 H 0.110 0.890 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.133 0.867 42 H 0.138 0.862 43 H 0.107 0.893 44 H 0.395 0.605 45 H -0.300 1.300 46 H -0.283 1.283 47 H 0.150 0.850 48 H 0.150 0.850 49 H 0.257 0.743 50 H 0.187 0.813 51 H 0.091 0.909 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.052 2.217 1.454 4.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.266 6.266 3 C -0.011 4.011 4 C 0.379 3.621 5 F -0.166 7.166 6 F -0.169 7.169 7 F -0.156 7.156 8 C -0.172 4.172 9 C -0.111 4.111 10 H 0.141 0.859 11 C 0.004 3.996 12 O -0.260 6.260 13 C 0.385 3.615 14 O -0.417 6.417 15 C -0.219 4.219 16 C 0.008 3.992 17 C 0.056 3.944 18 O -0.236 6.236 19 C 0.079 3.921 20 C -0.180 4.180 21 C -0.076 4.076 22 C -0.160 4.160 23 C -0.179 4.179 24 O -0.365 6.365 25 Si 0.679 3.321 26 C -0.094 4.094 27 C -0.222 4.222 28 O -0.064 6.064 29 C -0.076 4.076 30 C -0.201 4.201 31 C -0.148 4.148 32 H 0.128 0.872 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.147 0.853 36 H 0.121 0.879 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.151 0.849 42 H 0.156 0.844 43 H 0.124 0.876 44 H 0.244 0.756 45 H -0.228 1.228 46 H -0.210 1.210 47 H 0.167 0.833 48 H 0.168 0.832 49 H 0.272 0.728 50 H 0.204 0.796 51 H 0.109 0.891 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.044 0.809 0.770 3.243 hybrid contribution -0.250 0.586 0.165 0.658 sum 2.794 1.395 0.935 3.260 Atomic orbital electron populations 1.23275 0.78742 1.05129 1.01910 1.88070 1.22083 1.22573 1.93841 1.24299 1.00809 0.86245 0.89700 1.21485 0.74137 0.78699 0.87763 1.93178 1.37222 1.89354 1.96836 1.93187 1.95025 1.71086 1.57646 1.93172 1.68774 1.57062 1.96594 1.23645 0.99665 1.01695 0.92158 1.22044 0.98193 0.95518 0.95298 0.85923 1.23126 0.83112 0.96111 0.97286 1.86489 1.39016 1.36783 1.63685 1.20068 0.87249 0.78971 0.75222 1.90843 1.32523 1.59532 1.58767 1.20465 0.94508 0.98052 1.08881 1.22056 0.84218 0.96030 0.96901 1.21237 0.90170 0.95808 0.87185 1.86050 1.45529 1.52554 1.39509 1.19151 0.88088 0.90580 0.94306 1.20626 0.98323 1.02905 0.96119 1.20932 0.94240 0.93044 0.99419 1.20356 1.00151 0.98885 0.96631 1.25110 0.84002 1.00542 1.08228 1.86457 1.41220 1.69027 1.39769 0.93739 0.77379 0.75809 0.85150 1.21025 0.94497 0.98794 0.95080 1.21431 1.01651 0.96818 1.02345 1.83827 1.18108 1.43370 1.61093 1.24954 0.99310 0.84681 0.98644 1.23245 0.89467 1.03245 1.04159 1.23394 0.90361 1.05938 0.95065 0.87210 0.93319 0.91316 0.85322 0.87896 0.90527 0.89933 0.86993 0.87490 0.84860 0.84383 0.87590 0.75558 1.22785 1.21028 0.83309 0.83213 0.72754 0.79607 0.89083 0.85162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.43 113.37 1.18 1.17 16 2 O -0.35 -0.41 8.34 -148.98 -1.24 -1.65 16 3 C 0.03 -0.05 0.85 -10.17 -0.01 -0.05 16 4 C 0.43 0.78 2.51 71.99 0.18 0.96 16 5 F -0.18 -0.45 15.24 44.97 0.69 0.24 16 6 F -0.19 -1.13 17.09 44.97 0.77 -0.36 16 7 F -0.17 -0.22 15.82 44.97 0.71 0.49 16 8 C -0.13 0.80 6.52 31.12 0.20 1.00 16 9 C -0.09 0.45 4.20 -10.26 -0.04 0.41 16 10 H 0.12 -0.93 8.14 -2.39 -0.02 -0.95 16 11 C 0.08 0.01 5.07 71.98 0.37 0.37 16 12 O -0.34 -1.11 10.13 -56.83 -0.58 -1.69 16 13 C 0.54 3.58 7.95 70.19 0.56 4.13 16 14 O -0.53 -5.50 14.64 19.73 0.29 -5.21 16 15 C -0.22 -0.90 6.32 -19.01 -0.12 -1.02 16 16 C 0.06 0.23 7.01 25.28 0.18 0.41 16 17 C 0.13 0.33 4.74 71.23 0.34 0.67 16 18 O -0.32 -2.28 10.12 -92.40 -0.94 -3.22 16 19 C 0.12 0.68 6.69 22.51 0.15 0.83 16 20 C -0.16 -0.82 9.99 22.37 0.22 -0.59 16 21 C -0.06 -0.19 9.60 22.26 0.21 0.02 16 22 C -0.16 -0.25 5.39 -19.85 -0.11 -0.36 16 23 C -0.07 -0.03 2.82 71.24 0.20 0.17 16 24 O -0.56 -0.64 12.77 -148.98 -1.90 -2.54 16 25 Si 0.77 -1.26 29.78 68.60 2.04 0.78 16 26 C -0.08 -0.01 8.66 22.26 0.19 0.18 16 27 C -0.20 -0.35 9.04 22.37 0.20 -0.15 16 28 O -0.17 -0.23 10.52 4.67 0.05 -0.18 16 29 C -0.01 0.05 12.03 66.89 0.80 0.85 16 30 C -0.18 0.33 11.05 23.65 0.26 0.59 16 31 C -0.11 0.41 6.92 31.22 0.22 0.63 16 32 H 0.11 -0.47 8.14 -2.39 -0.02 -0.49 16 33 H 0.05 -0.06 6.25 -2.38 -0.01 -0.07 16 34 H 0.07 -0.37 6.76 -2.38 -0.02 -0.38 16 35 H 0.13 -1.11 8.06 -2.39 -0.02 -1.13 16 36 H 0.10 -0.74 6.70 -2.39 -0.02 -0.75 16 37 H 0.08 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.08 0.21 6.09 -2.38 -0.01 0.20 16 39 H 0.11 0.31 6.01 -2.39 -0.01 0.29 16 40 H 0.11 -0.25 7.66 -2.38 -0.02 -0.27 16 41 H 0.13 0.52 8.06 -2.91 -0.02 0.49 16 42 H 0.14 0.22 8.06 -2.91 -0.02 0.20 16 43 H 0.11 0.15 7.96 -2.39 -0.02 0.13 16 44 H 0.39 -2.60 8.70 -74.05 -0.64 -3.24 16 45 H -0.30 -1.77 7.11 99.48 0.71 -1.06 16 46 H -0.28 -0.73 7.11 99.48 0.71 -0.02 16 47 H 0.15 -0.68 4.87 -2.91 -0.01 -0.70 16 48 H 0.15 -0.41 6.30 -2.91 -0.02 -0.42 16 49 H 0.26 -3.53 8.06 -2.91 -0.02 -3.55 16 50 H 0.19 -1.17 8.06 -2.91 -0.02 -1.19 16 51 H 0.09 -0.17 8.10 -2.39 -0.02 -0.19 16 52 H 0.13 -0.84 7.01 -2.39 -0.02 -0.85 16 Total: 0.00 -22.58 443.59 5.50 -17.08 By element: Atomic # 1 Polarization: -14.40 SS G_CDS: 0.42 Total: -13.99 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 5.19 Total: 10.24 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -4.32 Total: -14.49 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 2.17 Total: 0.37 kcal Atomic # 14 Polarization: -1.26 SS G_CDS: 2.04 Total: 0.78 kcal Total: -22.58 5.50 -17.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4549110_17321610.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -235.179 kcal (2) G-P(sol) polarization free energy of solvation -22.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -257.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds