Wall clock time and date at job start Sat Mar 6 2021 08:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47334 * 2 1 4 4 C 1.53005 * 109.46566 * 240.00404 * 2 1 3 5 5 O 1.42897 * 109.47384 * 120.00999 * 2 1 3 6 6 C 1.42897 * 114.00484 * 59.99062 * 5 2 1 7 7 H 1.09006 * 112.90259 * 18.75119 * 6 5 2 8 8 C 1.53774 * 113.61760 * 150.00418 * 6 5 2 9 9 C 1.53779 * 87.08287 * 139.98380 * 8 6 5 10 10 H 1.08996 * 113.60947 * 89.20504 * 9 8 6 11 11 C 1.53000 * 113.61261 * 220.01794 * 9 8 6 12 12 O 1.45198 * 109.46884 * 184.99871 * 11 9 8 13 13 C 1.34231 * 116.99983 * 179.97438 * 12 11 9 14 14 O 1.20822 * 120.00142 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00053 * 180.02562 * 13 12 11 16 16 O 1.42899 * 109.47372 * 180.02562 * 15 13 12 17 17 C 1.35896 * 117.00227 * 180.02562 * 16 15 13 18 18 C 1.38716 * 120.05596 * 179.97438 * 17 16 15 19 19 N 1.48002 * 120.02830 * 359.97438 * 18 17 16 20 20 O 1.21801 * 120.00131 * 180.02562 * 19 18 17 21 21 O 1.21799 * 120.00010 * 359.97438 * 19 18 17 22 22 C 1.38166 * 119.94255 * 179.97438 * 18 17 16 23 23 C 1.38242 * 120.05713 * 0.02562 * 22 18 17 24 24 C 1.50708 * 119.94363 * 179.97438 * 23 22 18 25 25 O 1.42896 * 109.47003 * 299.99999 * 24 23 22 26 26 Si 1.86300 * 109.47062 * 179.97438 * 24 23 22 27 27 C 1.38282 * 120.11191 * 359.97438 * 23 22 18 28 28 C 1.38119 * 120.05737 * 359.74588 * 27 23 22 29 29 C 1.53775 * 87.07909 * 334.56960 * 9 8 6 30 30 H 1.09003 * 109.46703 * 299.99888 * 1 2 3 31 31 H 1.09000 * 109.47320 * 59.99347 * 1 2 3 32 32 H 1.08993 * 109.47819 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47011 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47419 * 300.00139 * 3 2 1 35 35 H 1.09004 * 109.46654 * 60.00974 * 3 2 1 36 36 H 1.09004 * 109.47181 * 300.00030 * 4 2 1 37 37 H 1.08993 * 109.47468 * 60.00301 * 4 2 1 38 38 H 1.09007 * 109.46687 * 180.02562 * 4 2 1 39 39 H 1.09006 * 113.61277 * 25.43374 * 8 6 5 40 40 H 1.09001 * 113.69334 * 254.54785 * 8 6 5 41 41 H 1.09002 * 109.47398 * 305.00209 * 11 9 8 42 42 H 1.09001 * 109.47194 * 65.00389 * 11 9 8 43 43 H 1.09008 * 109.47488 * 300.00148 * 15 13 12 44 44 H 1.09001 * 109.47517 * 59.99934 * 15 13 12 45 45 H 1.08000 * 119.97158 * 180.02562 * 22 18 17 46 46 H 1.09002 * 109.46882 * 59.99974 * 24 23 22 47 47 H 0.96702 * 114.00011 * 179.97438 * 25 24 23 48 48 H 1.48498 * 109.99761 * 59.99931 * 26 24 23 49 49 H 1.48491 * 109.99897 * 181.32082 * 26 24 23 50 50 H 1.08001 * 119.97136 * 180.02562 * 27 23 22 51 51 H 1.08003 * 120.03382 * 180.27746 * 28 27 23 52 52 H 1.09005 * 113.61502 * 139.98686 * 29 9 8 53 53 H 1.08999 * 113.61676 * 270.88108 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0398 -0.7212 -1.2494 5 8 2.0063 -0.6738 1.1666 6 6 1.5846 -2.0356 1.2643 7 1 1.2510 -2.4458 0.3111 8 6 2.5835 -2.9381 2.0075 9 6 1.3666 -3.6122 2.6628 10 1 0.9744 -4.4543 2.0927 11 6 1.5711 -3.9406 4.1431 12 8 0.4216 -4.6759 4.6390 13 6 0.4437 -5.0432 5.9299 14 8 1.3920 -4.7592 6.6227 15 6 -0.7142 -5.8098 6.5152 16 8 -0.4572 -6.0815 7.8944 17 6 -1.4098 -6.7712 8.5753 18 6 -1.2254 -7.0700 9.9173 19 7 0.0097 -6.6385 10.6092 20 8 0.1714 -6.9015 11.7874 21 8 0.8649 -6.0211 10.0001 22 6 -2.1957 -7.7708 10.6074 23 6 -3.3493 -8.1747 9.9616 24 6 -4.4058 -8.9395 10.7167 25 8 -3.8466 -10.1550 11.2184 26 14 -5.8238 -9.3326 9.5741 27 6 -3.5356 -7.8780 8.6239 28 6 -2.5713 -7.1726 7.9309 29 6 0.6076 -2.2964 2.4228 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9562 0.8901 36 1 1.6764 -1.7489 -1.2494 37 1 1.6766 -0.2073 -2.1393 38 1 3.1299 -0.7216 -1.2492 39 1 3.2171 -2.4001 2.7128 40 1 3.1484 -3.5999 1.3510 41 1 2.4689 -4.5476 4.2599 42 1 1.6821 -3.0153 4.7086 43 1 -1.6248 -5.2172 6.4256 44 1 -0.8377 -6.7492 5.9763 45 1 -2.0527 -8.0034 11.6524 46 1 -4.7669 -8.3350 11.5488 47 1 -4.4716 -10.6993 11.7167 48 1 -5.3448 -10.1562 8.4350 49 1 -6.8863 -10.0589 10.3146 50 1 -4.4379 -8.1943 8.1217 51 1 -2.7192 -6.9373 6.8872 52 1 -0.4238 -2.4398 2.1005 53 1 0.7008 -1.5830 3.2416 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4549112_14598394.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:00:08 Heat of formation + Delta-G solvation = -135.125594 kcal Electronic energy + Delta-G solvation = -36694.688594 eV Core-core repulsion = 31503.924339 eV Total energy + Delta-G solvation = -5190.764255 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.180 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.32514 -42.02045 -41.38700 -40.76797 -39.61137 -38.54250 -37.65482 -37.58849 -37.29372 -33.90692 -33.56472 -32.41042 -30.97193 -29.22517 -28.33034 -28.24219 -27.84113 -26.64043 -26.57106 -24.42799 -23.64323 -22.82164 -22.14231 -20.85731 -20.62109 -20.51669 -19.81470 -19.20547 -18.74805 -18.66782 -18.53474 -18.18300 -18.08334 -17.64627 -17.02470 -16.89602 -16.53037 -16.44557 -15.97766 -15.91776 -15.76434 -15.47277 -14.94584 -14.74765 -14.55908 -14.25400 -14.19147 -14.04560 -13.82576 -13.77495 -13.46534 -13.31542 -13.22813 -13.09858 -12.97630 -12.78643 -12.74135 -12.72023 -12.64190 -12.44669 -12.39773 -12.29972 -12.20829 -12.15232 -11.93812 -11.88092 -11.80619 -11.51380 -11.33345 -11.16497 -10.84484 -10.61845 -10.34429 -9.81263 -4.92512 -1.32986 -0.26310 0.14170 0.31323 0.77911 0.97317 1.25809 1.63621 1.98142 2.01154 2.04822 2.73584 3.04481 3.15992 3.25591 3.38362 3.51253 3.51913 3.57282 3.69526 3.77236 3.82801 3.84576 3.90350 3.92072 3.93504 3.99554 4.09824 4.13349 4.19609 4.22135 4.32147 4.38389 4.50163 4.50767 4.61443 4.64635 4.69200 4.78113 4.78990 4.80200 4.84611 4.85635 4.92800 4.96019 5.02343 5.05941 5.13058 5.14339 5.17157 5.23444 5.33702 5.35358 5.41499 5.67042 6.40631 6.44460 6.53280 6.55026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.098 3.902 3 C -0.141 4.141 4 C -0.177 4.177 5 O -0.384 6.384 6 C 0.059 3.941 7 H 0.107 0.893 8 C -0.130 4.130 9 C -0.098 4.098 10 H 0.124 0.876 11 C 0.079 3.921 12 O -0.341 6.341 13 C 0.459 3.541 14 O -0.524 6.524 15 C 0.054 3.946 16 O -0.296 6.296 17 C 0.194 3.806 18 C -0.102 4.102 19 N 0.035 4.965 20 O -0.200 6.200 21 O -0.173 6.173 22 C -0.004 4.004 23 C -0.110 4.110 24 C -0.094 4.094 25 O -0.562 6.562 26 Si 0.785 3.215 27 C -0.006 4.006 28 C -0.186 4.186 29 C -0.147 4.147 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.160 0.840 44 H 0.156 0.844 45 H 0.153 0.847 46 H 0.100 0.900 47 H 0.399 0.601 48 H -0.280 1.280 49 H -0.291 1.291 50 H 0.188 0.812 51 H 0.209 0.791 52 H 0.085 0.915 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.712 -1.075 -9.832 16.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.059 3.941 3 C -0.198 4.198 4 C -0.234 4.234 5 O -0.304 6.304 6 C 0.002 3.998 7 H 0.124 0.876 8 C -0.167 4.167 9 C -0.116 4.116 10 H 0.142 0.858 11 C 0.005 3.995 12 O -0.258 6.258 13 C 0.302 3.698 14 O -0.411 6.411 15 C -0.020 4.020 16 O -0.207 6.207 17 C 0.145 3.855 18 C -0.187 4.187 19 N 0.545 4.455 20 O -0.408 6.408 21 O -0.387 6.387 22 C -0.023 4.023 23 C -0.111 4.111 24 C -0.201 4.201 25 O -0.373 6.373 26 Si 0.688 3.312 27 C -0.024 4.024 28 C -0.204 4.204 29 C -0.185 4.185 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.177 0.823 44 H 0.173 0.827 45 H 0.170 0.830 46 H 0.118 0.882 47 H 0.251 0.749 48 H -0.207 1.207 49 H -0.219 1.219 50 H 0.204 0.796 51 H 0.226 0.774 52 H 0.103 0.897 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.583 -1.360 -10.404 16.384 hybrid contribution 1.272 -0.694 1.655 2.199 sum -11.311 -2.054 -8.749 14.447 Atomic orbital electron populations 1.22432 0.94704 1.02921 1.02946 1.21680 0.93882 0.93226 0.85328 1.21803 1.01576 0.93516 1.02900 1.22450 1.01829 1.01267 0.97845 1.88025 1.74326 1.24249 1.43769 1.23686 0.95663 0.82251 0.98213 0.87560 1.23251 0.96503 0.97507 0.99487 1.22332 0.98521 0.98444 0.92334 0.85835 1.23219 0.86127 0.95339 0.94785 1.86409 1.46008 1.67658 1.25700 1.23431 0.87899 0.77590 0.80919 1.90818 1.36473 1.52320 1.61522 1.22589 0.96050 1.03939 0.79396 1.86375 1.41484 1.68459 1.24348 1.18841 0.89264 0.89279 0.88086 1.20828 0.89746 1.15790 0.92352 1.43856 1.02700 0.98224 1.00697 1.94502 1.85150 1.60841 1.00290 1.94665 1.38061 1.38993 1.67006 1.20838 0.90097 0.89868 1.01479 1.19481 0.95200 1.01386 0.95019 1.25226 1.01757 0.87623 1.05488 1.86542 1.42231 1.33758 1.74742 0.94236 0.72940 0.87241 0.76817 1.21677 0.98810 0.90278 0.91607 1.21817 0.91130 1.03454 1.04024 1.23597 0.99696 0.96043 0.99124 0.92500 0.90633 0.91635 0.92510 0.89712 0.92532 0.91511 0.90437 0.92417 0.90025 0.89190 0.91018 0.91681 0.82269 0.82651 0.82973 0.88168 0.74927 1.20708 1.21860 0.79570 0.77381 0.89660 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.50 8.38 71.98 0.60 1.10 16 2 C 0.10 -0.05 1.11 -10.79 -0.01 -0.06 16 3 C -0.14 0.07 8.84 71.98 0.64 0.71 16 4 C -0.18 0.50 8.38 71.98 0.60 1.11 16 5 O -0.38 -1.20 10.00 -148.98 -1.49 -2.68 16 6 C 0.06 -0.11 2.82 31.12 0.09 -0.02 16 7 H 0.11 -0.51 5.55 -2.38 -0.01 -0.52 16 8 C -0.13 0.29 7.47 31.12 0.23 0.52 16 9 C -0.10 0.37 4.02 -10.27 -0.04 0.33 16 10 H 0.12 -0.85 8.14 -2.39 -0.02 -0.87 16 11 C 0.08 0.04 5.30 71.98 0.38 0.42 16 12 O -0.34 0.16 10.22 -51.42 -0.53 -0.37 16 13 C 0.46 1.34 8.03 71.24 0.57 1.92 16 14 O -0.52 -7.43 16.25 28.41 0.46 -6.97 16 15 C 0.05 -0.34 5.33 71.24 0.38 0.04 16 16 O -0.30 -1.30 7.68 -63.34 -0.49 -1.78 16 17 C 0.19 0.20 6.67 22.51 0.15 0.35 16 18 C -0.10 -0.77 6.87 36.48 0.25 -0.52 16 19 N 0.03 0.58 4.45 -46.24 -0.21 0.38 16 20 O -0.20 -3.71 18.45 18.89 0.35 -3.36 16 21 O -0.17 -3.69 17.24 25.61 0.44 -3.25 16 22 C 0.00 -0.01 9.11 22.25 0.20 0.19 16 23 C -0.11 0.43 5.42 -19.85 -0.11 0.32 16 24 C -0.09 0.62 2.81 71.24 0.20 0.82 16 25 O -0.56 1.17 12.74 -148.98 -1.90 -0.73 16 26 Si 0.78 -7.96 29.79 68.60 2.04 -5.92 16 27 C -0.01 0.06 8.66 22.25 0.19 0.26 16 28 C -0.19 1.82 9.04 22.37 0.20 2.02 16 29 C -0.15 0.39 7.46 31.12 0.23 0.62 16 30 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 32 H 0.06 -0.28 7.02 -2.39 -0.02 -0.30 16 33 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.08 -0.31 8.14 -2.39 -0.02 -0.32 16 35 H 0.06 0.05 8.14 -2.38 -0.02 0.03 16 36 H 0.07 -0.29 6.25 -2.39 -0.01 -0.31 16 37 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 38 H 0.06 -0.06 8.14 -2.38 -0.02 -0.08 16 39 H 0.08 0.06 8.10 -2.38 -0.02 0.04 16 40 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 41 H 0.07 0.12 8.13 -2.39 -0.02 0.10 16 42 H 0.06 0.20 7.84 -2.39 -0.02 0.18 16 43 H 0.16 -2.42 7.65 -2.38 -0.02 -2.43 16 44 H 0.16 -2.26 7.67 -2.39 -0.02 -2.28 16 45 H 0.15 0.63 7.61 -2.91 -0.02 0.61 16 46 H 0.10 -0.98 7.96 -2.39 -0.02 -1.00 16 47 H 0.40 -3.89 8.74 -74.06 -0.65 -4.53 16 48 H -0.28 1.39 7.11 99.48 0.71 2.10 16 49 H -0.29 1.14 7.11 99.48 0.71 1.85 16 50 H 0.19 -3.21 4.87 -2.91 -0.01 -3.23 16 51 H 0.21 -4.16 6.30 -2.91 -0.02 -4.18 16 52 H 0.08 -0.42 8.14 -2.38 -0.02 -0.44 16 53 H 0.08 0.05 7.90 -2.39 -0.02 0.03 16 Total: 0.00 -35.16 439.79 3.80 -31.36 By element: Atomic # 1 Polarization: -17.13 SS G_CDS: 0.34 Total: -16.79 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 4.77 Total: 10.12 kcal Atomic # 7 Polarization: 0.58 SS G_CDS: -0.21 Total: 0.38 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -3.15 Total: -19.15 kcal Atomic # 14 Polarization: -7.96 SS G_CDS: 2.04 Total: -5.92 kcal Total: -35.16 3.80 -31.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4549112_14598394.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.766 kcal (2) G-P(sol) polarization free energy of solvation -35.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds