Wall clock time and date at job start Sat Mar 6 2021 06:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86300 * 109.47001 * 2 1 4 4 C 1.86299 * 109.46874 * 240.00203 * 2 1 3 5 5 C 1.86799 * 109.47028 * 120.00401 * 2 1 3 6 6 C 1.38234 * 120.00228 * 90.00161 * 5 2 1 7 7 C 1.38230 * 119.99885 * 180.02562 * 6 5 2 8 8 C 1.38235 * 120.00326 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00236 * 179.70551 * 8 7 6 10 10 O 1.45200 * 109.47482 * 90.00076 * 9 8 7 11 11 C 1.34225 * 117.00114 * 180.02562 * 10 9 8 12 12 O 1.20828 * 119.99970 * 359.97438 * 11 10 9 13 13 C 1.50695 * 120.00076 * 179.97438 * 11 10 9 14 14 O 1.42897 * 109.47168 * 179.97438 * 13 11 10 15 15 C 1.35901 * 117.00181 * 179.97438 * 14 13 11 16 16 C 1.38724 * 120.05317 * 359.73043 * 15 14 13 17 17 C 1.38159 * 119.94000 * 179.74562 * 16 15 14 18 18 C 1.38246 * 120.06031 * 0.52692 * 17 16 15 19 19 C 1.50703 * 119.94752 * 179.72367 * 18 17 16 20 20 O 1.42894 * 109.46889 * 245.02392 * 19 18 17 21 21 Si 1.86298 * 109.46777 * 5.02492 * 19 18 17 22 22 H 1.48499 * 109.47524 * 60.00065 * 21 19 18 23 23 H 1.48505 * 109.46840 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47050 * 299.99827 * 21 19 18 25 25 C 1.38286 * 120.10810 * 359.74781 * 18 17 16 26 26 C 1.38123 * 120.06006 * 359.97392 * 25 18 17 27 27 N 1.48002 * 120.03261 * 180.02562 * 26 25 18 28 28 O 1.21804 * 119.99615 * 359.97438 * 27 26 25 29 29 O 1.21798 * 120.00261 * 179.97438 * 27 26 25 30 30 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 31 31 C 1.38235 * 119.99567 * 270.01874 * 5 2 1 32 32 H 1.09001 * 109.47205 * 299.99925 * 1 2 3 33 33 H 1.08999 * 109.47227 * 59.99973 * 1 2 3 34 34 H 1.09001 * 109.47246 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.46574 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.47152 * 300.00073 * 3 2 1 37 37 H 1.09000 * 109.46711 * 60.00392 * 3 2 1 38 38 H 1.09007 * 109.47223 * 300.00044 * 4 2 1 39 39 H 1.08999 * 109.47337 * 59.99891 * 4 2 1 40 40 H 1.09000 * 109.47073 * 180.02562 * 4 2 1 41 41 H 1.07992 * 119.99701 * 359.97438 * 6 5 2 42 42 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 43 43 H 1.09003 * 109.46871 * 209.99878 * 9 8 7 44 44 H 1.09001 * 109.47017 * 329.99216 * 9 8 7 45 45 H 1.08999 * 109.47113 * 300.00281 * 13 11 10 46 46 H 1.09004 * 109.46950 * 60.00153 * 13 11 10 47 47 H 1.08001 * 120.02695 * 0.02562 * 16 15 14 48 48 H 1.07997 * 119.97049 * 180.27601 * 17 16 15 49 49 H 1.09001 * 109.46793 * 125.02178 * 19 18 17 50 50 H 0.96693 * 114.00154 * 60.00280 * 20 19 18 51 51 H 1.08001 * 119.97165 * 180.02562 * 25 18 17 52 52 H 1.08001 * 120.00279 * 180.02562 * 30 8 7 53 53 H 1.07997 * 120.00423 * 359.97438 * 31 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4857 -0.8807 1.5252 6 6 2.7161 -2.2433 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4067 -2.1841 3.7827 9 6 3.9021 -2.8958 5.0152 10 8 5.3541 -2.9026 5.0195 11 6 5.9576 -3.5030 6.0573 12 8 5.2946 -4.0057 6.9334 13 6 7.4621 -3.5499 6.1298 14 8 7.8605 -4.2358 7.3184 15 6 9.1954 -4.3670 7.5370 16 6 10.1030 -3.8511 6.6235 17 6 11.4596 -3.9812 6.8507 18 6 11.9128 -4.6342 7.9818 19 6 13.3931 -4.7801 8.2239 20 8 13.7496 -6.1630 8.1757 21 14 14.3317 -3.8505 6.9103 22 1 13.9612 -2.4133 6.9604 23 1 15.7904 -3.9947 7.1486 24 1 13.9918 -4.4030 5.5745 25 6 11.0100 -5.1543 8.8911 26 6 9.6528 -5.0220 8.6715 27 7 8.6872 -5.5783 9.6454 28 8 9.0893 -6.1537 10.6408 29 8 7.4905 -5.4609 9.4515 30 6 3.1773 -0.8214 3.8166 31 6 2.7157 -0.1698 2.6882 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 3.5740 1.7564 0.0005 36 1 2.1207 2.2703 -0.8900 37 1 2.1207 2.2702 0.8900 38 1 2.1206 -1.9059 -1.5212 39 1 2.1206 -0.3644 -2.4111 40 1 3.5740 -0.8786 -1.5210 41 1 2.5358 -2.7987 0.5824 42 1 3.3560 -3.9596 2.5931 43 1 3.5386 -2.3794 5.9037 44 1 3.5339 -3.9217 5.0151 45 1 7.8516 -4.0761 5.2583 46 1 7.8569 -2.5340 6.1473 47 1 9.7495 -3.3443 5.7377 48 1 12.1666 -3.5758 6.1420 49 1 13.6425 -4.3745 9.2045 50 1 13.5554 -6.5899 7.3301 51 1 11.3665 -5.6637 9.7742 52 1 3.3576 -0.2659 4.7251 53 1 2.5358 0.8947 2.7150 RHF calculation, no. of doubly occupied orbitals= 75 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4549112_9435856.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:05:47 Heat of formation + Delta-G solvation = -129.721895 kcal Electronic energy + Delta-G solvation = -36280.971443 eV Core-core repulsion = 31210.851416 eV Total energy + Delta-G solvation = -5070.120027 eV No. of doubly occupied orbitals = 75 Molecular weight (most abundant/longest-lived isotopes) = 419.150 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -43.33255 -42.06589 -41.39841 -40.07923 -39.60989 -37.74408 -37.61452 -37.33619 -33.58208 -33.17555 -32.32067 -31.90429 -30.48560 -29.41697 -28.28061 -28.26430 -27.85404 -27.35319 -26.52901 -24.30982 -23.50645 -22.99015 -22.37132 -22.03467 -20.63821 -19.82287 -19.33058 -18.79908 -18.69190 -18.42009 -18.18536 -18.12768 -17.41726 -16.98909 -16.76405 -16.34694 -16.14733 -15.93989 -15.91076 -15.64983 -15.27918 -14.82115 -14.46560 -14.30872 -14.27734 -14.06311 -14.02960 -13.94760 -13.80986 -13.79586 -13.70054 -13.40445 -13.27052 -13.15081 -13.10057 -12.95406 -12.72573 -12.70082 -12.50839 -12.33034 -12.29556 -12.22844 -12.13682 -12.09268 -11.80453 -11.77883 -11.68520 -10.91921 -10.87788 -10.79160 -10.74658 -10.52933 -9.87099 -9.82534 -9.72154 -1.35107 -0.29366 0.01250 0.11856 0.30869 0.50369 0.87426 0.90704 1.14621 1.47656 1.54842 1.83559 1.97582 1.98987 1.99121 2.03687 2.16831 2.67049 2.89638 3.07274 3.16436 3.34712 3.42444 3.53669 3.65620 3.69610 3.72701 3.75549 3.81557 3.84261 4.09969 4.19287 4.24029 4.28123 4.36205 4.52420 4.54361 4.60454 4.69092 4.78073 4.85092 4.85471 4.89824 4.90851 4.91112 4.91690 4.96372 5.03713 5.10852 5.14413 5.15003 5.38469 5.54593 5.57452 5.60397 5.62567 5.68803 5.72187 6.09467 6.39936 6.47797 6.68099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.466 4.466 2 Si 1.128 2.872 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.370 4.370 6 C -0.102 4.102 7 C -0.118 4.118 8 C -0.105 4.105 9 C 0.110 3.890 10 O -0.342 6.342 11 C 0.461 3.539 12 O -0.519 6.519 13 C 0.056 3.944 14 O -0.294 6.294 15 C 0.194 3.806 16 C -0.189 4.189 17 C -0.018 4.018 18 C -0.147 4.147 19 C -0.085 4.085 20 O -0.554 6.554 21 Si 0.983 3.017 22 H -0.242 1.242 23 H -0.279 1.279 24 H -0.231 1.231 25 C 0.003 3.997 26 C -0.100 4.100 27 N 0.034 4.966 28 O -0.193 6.193 29 O -0.177 6.177 30 C -0.118 4.118 31 C -0.102 4.102 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.141 0.859 42 H 0.129 0.871 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.156 0.844 46 H 0.155 0.845 47 H 0.202 0.798 48 H 0.177 0.823 49 H 0.127 0.873 50 H 0.392 0.608 51 H 0.159 0.841 52 H 0.129 0.871 53 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.112 6.665 -11.745 14.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.315 2.685 3 C -0.569 4.569 4 C -0.569 4.569 5 C -0.409 4.409 6 C -0.119 4.119 7 C -0.136 4.136 8 C -0.105 4.105 9 C 0.037 3.963 10 O -0.259 6.259 11 C 0.303 3.697 12 O -0.406 6.406 13 C -0.018 4.018 14 O -0.205 6.205 15 C 0.145 3.855 16 C -0.207 4.207 17 C -0.035 4.035 18 C -0.148 4.148 19 C -0.194 4.194 20 O -0.361 6.361 21 Si 0.805 3.195 22 H -0.165 1.165 23 H -0.205 1.205 24 H -0.154 1.154 25 C -0.016 4.016 26 C -0.185 4.185 27 N 0.545 4.455 28 O -0.403 6.403 29 O -0.390 6.390 30 C -0.136 4.136 31 C -0.119 4.119 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.159 0.841 42 H 0.147 0.853 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.173 0.827 46 H 0.173 0.827 47 H 0.219 0.781 48 H 0.194 0.806 49 H 0.145 0.855 50 H 0.241 0.759 51 H 0.177 0.823 52 H 0.147 0.853 53 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.764 7.228 -11.774 14.970 hybrid contribution -1.153 -1.009 1.059 1.863 sum 4.610 6.219 -10.715 13.219 Atomic orbital electron populations 1.26325 1.21894 1.04416 1.04533 0.77160 0.64974 0.64720 0.61657 1.26272 1.06523 1.19262 1.04868 1.26272 1.06523 1.08461 1.15664 1.28073 1.02054 0.99639 1.11183 1.21397 0.97185 0.95163 0.98189 1.21377 0.99014 1.00487 0.92756 1.19521 1.02110 0.94573 0.94320 1.21952 0.75588 1.01554 0.97158 1.86498 1.24002 1.70770 1.44662 1.23399 0.91935 0.74989 0.79367 1.90817 1.67249 1.43105 1.39470 1.22540 0.88008 1.02780 0.88521 1.86378 1.19396 1.71976 1.42780 1.18838 0.83785 0.91468 0.91443 1.21767 0.92328 1.05277 1.01350 1.21737 0.96070 0.90962 0.94772 1.20481 0.97265 1.01743 0.95333 1.25265 0.91560 0.89425 1.13193 1.86553 1.85570 1.22052 1.41932 0.85229 0.78247 0.79151 0.76911 1.16527 1.20462 1.15408 1.20905 0.87464 0.93255 0.99938 1.20863 0.90041 1.13924 0.93641 1.43860 1.02152 0.98385 1.01105 1.94510 1.83793 1.42866 1.19113 1.94673 0.99200 1.63215 1.81903 1.21380 0.99016 0.93548 0.99703 1.21401 0.97184 1.00861 0.92497 0.91480 0.90711 0.91474 0.91107 0.90696 0.90930 0.90925 0.90698 0.91104 0.84078 0.85332 0.90131 0.90118 0.82707 0.82745 0.78087 0.80606 0.85496 0.75870 0.82323 0.85342 0.84084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.15 8.65 113.37 0.98 3.14 16 2 Si 1.13 -8.37 12.32 68.60 0.85 -7.52 16 3 C -0.46 2.83 8.53 113.37 0.97 3.80 16 4 C -0.46 2.84 8.53 113.37 0.97 3.80 16 5 C -0.37 0.96 4.59 22.27 0.10 1.06 16 6 C -0.10 0.15 9.29 22.27 0.21 0.35 16 7 C -0.12 -0.08 9.70 22.27 0.22 0.14 16 8 C -0.11 -0.19 5.52 -19.87 -0.11 -0.30 16 9 C 0.11 0.27 5.59 71.24 0.40 0.67 16 10 O -0.34 -0.54 10.20 -51.37 -0.52 -1.06 16 11 C 0.46 1.57 8.03 71.23 0.57 2.14 16 12 O -0.52 -7.15 16.25 28.39 0.46 -6.69 16 13 C 0.06 -0.31 5.33 71.23 0.38 0.07 16 14 O -0.29 -1.21 7.68 -63.40 -0.49 -1.69 16 15 C 0.19 0.06 6.67 22.51 0.15 0.21 16 16 C -0.19 1.86 9.04 22.37 0.20 2.06 16 17 C -0.02 0.19 8.66 22.25 0.19 0.38 16 18 C -0.15 0.89 5.35 -19.85 -0.11 0.79 16 19 C -0.09 0.64 2.80 71.24 0.20 0.84 16 20 O -0.55 2.45 12.83 -148.98 -1.91 0.54 16 21 Si 0.98 -9.48 25.13 68.60 1.72 -7.75 16 22 H -0.24 2.43 7.11 99.48 0.71 3.14 16 23 H -0.28 1.03 7.11 99.48 0.71 1.73 16 24 H -0.23 2.80 7.04 99.48 0.70 3.51 16 25 C 0.00 0.00 9.19 22.25 0.20 0.21 16 26 C -0.10 -0.59 6.87 36.47 0.25 -0.34 16 27 N 0.03 0.52 4.45 -46.24 -0.21 0.32 16 28 O -0.19 -3.29 18.45 18.88 0.35 -2.94 16 29 O -0.18 -3.59 17.24 25.61 0.44 -3.15 16 30 C -0.12 -0.08 9.70 22.27 0.22 0.14 16 31 C -0.10 0.14 9.29 22.27 0.21 0.35 16 32 H 0.07 -0.26 7.96 -2.39 -0.02 -0.27 16 33 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 34 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 35 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 36 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 37 H 0.07 -0.46 7.69 -2.39 -0.02 -0.48 16 38 H 0.07 -0.46 7.69 -2.38 -0.02 -0.48 16 39 H 0.07 -0.47 7.96 -2.39 -0.02 -0.48 16 40 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 41 H 0.14 -0.80 7.43 -2.91 -0.02 -0.83 16 42 H 0.13 -0.23 8.06 -2.91 -0.02 -0.26 16 43 H 0.08 0.22 8.08 -2.39 -0.02 0.21 16 44 H 0.08 0.22 8.08 -2.39 -0.02 0.20 16 45 H 0.16 -2.14 7.65 -2.39 -0.02 -2.16 16 46 H 0.16 -2.12 7.68 -2.38 -0.02 -2.14 16 47 H 0.20 -3.80 6.30 -2.91 -0.02 -3.82 16 48 H 0.18 -2.93 4.86 -2.91 -0.01 -2.94 16 49 H 0.13 -1.03 7.96 -2.39 -0.02 -1.05 16 50 H 0.39 -4.53 8.70 -74.06 -0.64 -5.18 16 51 H 0.16 0.23 7.61 -2.91 -0.02 0.20 16 52 H 0.13 -0.23 8.06 -2.91 -0.02 -0.25 16 53 H 0.14 -0.80 7.43 -2.91 -0.02 -0.82 16 Total: 0.00 -32.58 456.16 7.95 -24.63 By element: Atomic # 1 Polarization: -15.23 SS G_CDS: 1.06 Total: -14.17 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 6.20 Total: 19.50 kcal Atomic # 7 Polarization: 0.52 SS G_CDS: -0.21 Total: 0.32 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -1.67 Total: -15.00 kcal Atomic # 14 Polarization: -17.85 SS G_CDS: 2.57 Total: -15.28 kcal Total: -32.58 7.95 -24.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4549112_9435856.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.091 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds