Wall clock time and date at job start Sat Mar 6 2021 10:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86303 * 109.47515 * 2 1 4 4 C 1.50704 * 109.47198 * 239.99854 * 2 1 3 5 5 C 1.38236 * 119.97255 * 120.02167 * 4 2 1 6 6 C 1.38294 * 120.11373 * 179.97438 * 5 4 2 7 7 C 1.38119 * 120.05341 * 359.76428 * 6 5 4 8 8 C 1.38758 * 119.94112 * 0.51448 * 7 6 5 9 9 O 1.35903 * 120.05418 * 179.74483 * 8 7 6 10 10 C 1.42900 * 116.99818 * 359.71885 * 9 8 7 11 11 C 1.50704 * 109.47180 * 180.02562 * 10 9 8 12 12 C 1.39600 * 120.07819 * 180.02562 * 11 10 9 13 13 C 1.47731 * 120.15170 * 0.02562 * 12 11 10 14 14 O 1.21467 * 119.99417 * 359.97438 * 13 12 11 15 15 O 1.34707 * 120.00059 * 180.02562 * 13 12 11 16 16 C 1.45205 * 116.99973 * 179.97438 * 15 13 12 17 17 C 1.52995 * 109.47513 * 180.02562 * 16 15 13 18 18 H 1.08997 * 112.84608 * 43.80211 * 17 16 15 19 19 C 1.53776 * 113.61943 * 175.00369 * 17 16 15 20 20 C 1.53774 * 87.08232 * 139.97827 * 19 17 16 21 21 H 1.09006 * 113.61360 * 89.19977 * 20 19 17 22 22 O 1.42898 * 113.61921 * 220.01563 * 20 19 17 23 23 C 1.53772 * 87.08479 * 334.57034 * 20 19 17 24 24 C 1.39657 * 119.70117 * 179.70814 * 12 11 10 25 25 C 1.37916 * 119.84611 * 0.54745 * 24 12 11 26 26 C 1.38391 * 120.15142 * 359.44839 * 25 24 12 27 27 C 1.37972 * 120.07448 * 0.02562 * 11 10 9 28 28 C 1.38168 * 119.97272 * 300.00329 * 4 2 1 29 29 H 0.96699 * 113.99928 * 59.99513 * 1 2 3 30 30 H 1.09007 * 109.47046 * 120.00291 * 2 1 3 31 31 H 1.48498 * 109.99784 * 60.00062 * 3 2 1 32 32 H 1.48497 * 110.00077 * 181.31956 * 3 2 1 33 33 H 1.08003 * 119.94533 * 359.97438 * 5 4 2 34 34 H 1.08003 * 119.97041 * 180.02562 * 6 5 4 35 35 H 1.07996 * 120.02832 * 180.27997 * 7 6 5 36 36 H 1.08997 * 109.47065 * 60.00852 * 10 9 8 37 37 H 1.09003 * 109.47322 * 300.00325 * 10 9 8 38 38 H 1.08995 * 109.47261 * 300.00975 * 16 15 13 39 39 H 1.09006 * 109.46619 * 59.99956 * 16 15 13 40 40 H 1.08996 * 113.61229 * 254.53393 * 19 17 16 41 41 H 1.09001 * 113.61277 * 25.43261 * 19 17 16 42 42 H 0.96703 * 114.00575 * 180.02562 * 22 20 19 43 43 H 1.08999 * 113.61775 * 270.88200 * 23 20 19 44 44 H 1.08998 * 113.61809 * 139.98177 * 23 20 19 45 45 H 1.07998 * 120.07555 * 180.27325 * 24 12 11 46 46 H 1.08002 * 119.92771 * 179.73272 * 25 24 12 47 47 H 1.07998 * 119.85156 * 180.30165 * 26 25 24 48 48 H 1.08004 * 119.92078 * 0.04295 * 27 11 10 49 49 H 1.08005 * 120.02405 * 0.04418 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 2.7264 -0.0383 -2.1398 6 6 3.1894 -0.6875 -3.2697 7 6 2.8623 -2.0112 -3.4897 8 6 2.0596 -2.6865 -2.5814 9 8 1.7320 -3.9875 -2.7982 10 6 2.2440 -4.5961 -3.9855 11 6 1.7798 -6.0282 -4.0562 12 6 2.1554 -6.8330 -5.1332 13 6 3.0092 -6.2848 -6.2069 14 8 3.3857 -5.1312 -6.1540 15 8 3.3694 -7.0640 -7.2451 16 6 4.2089 -6.4587 -8.2635 17 6 4.5112 -7.4887 -9.3537 18 1 3.6336 -8.0651 -9.6464 19 6 5.2955 -6.9131 -10.5447 20 6 6.0964 -8.2259 -10.5506 21 1 5.6537 -9.0046 -11.1718 22 8 7.4918 -8.0441 -10.7993 23 6 5.7480 -8.3535 -9.0583 24 6 1.7257 -8.1607 -5.1877 25 6 0.9249 -8.6647 -4.1844 26 6 0.5563 -7.8614 -3.1196 27 6 0.9826 -6.5467 -3.0566 28 6 1.5971 -2.0333 -1.4486 29 1 -0.3933 0.4418 -0.7650 30 1 1.7923 -0.5139 0.8900 31 1 1.5616 2.4678 1.2085 32 1 3.5346 1.7702 -0.0321 33 1 2.9864 0.9958 -1.9676 34 1 3.8108 -0.1602 -3.9784 35 1 3.2279 -2.5192 -4.3699 36 1 3.3335 -4.5676 -3.9676 37 1 1.8805 -4.0532 -4.8579 38 1 3.6902 -5.6067 -8.7028 39 1 5.1423 -6.1223 -7.8121 40 1 4.6883 -6.7679 -11.4381 41 1 5.8938 -6.0379 -10.2914 42 1 8.0008 -8.8663 -10.8046 43 1 6.4699 -7.8721 -8.3986 44 1 5.5062 -9.3712 -8.7518 45 1 2.0163 -8.7900 -6.0159 46 1 0.5883 -9.6901 -4.2275 47 1 -0.0670 -8.2625 -2.3341 48 1 0.6908 -5.9249 -2.2232 49 1 0.9755 -2.5579 -0.7380 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4557136_11354868.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 10:10:39 Heat of formation + Delta-G solvation = -113.344336 kcal Electronic energy + Delta-G solvation = -32420.838221 eV Core-core repulsion = 27860.205584 eV Total energy + Delta-G solvation = -4560.632637 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.154 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.04356 -41.32011 -40.47178 -39.85629 -39.00634 -37.69128 -37.27249 -36.01312 -33.45231 -32.65390 -32.49070 -31.06455 -29.70216 -27.96795 -26.78072 -26.70093 -25.30007 -23.87458 -23.54984 -23.10645 -22.03134 -21.77700 -20.60208 -19.18420 -19.09051 -18.67633 -18.15217 -17.80632 -17.72061 -17.40605 -17.07237 -17.06706 -16.55776 -16.40625 -16.14849 -15.86651 -15.73064 -15.38309 -15.21467 -15.06497 -14.89559 -14.58348 -14.34542 -14.22283 -14.07524 -13.76369 -13.67613 -13.50066 -13.38356 -12.97837 -12.94668 -12.78372 -12.57120 -12.44165 -12.30408 -12.25032 -12.15778 -12.02263 -11.75643 -11.70212 -11.41870 -11.23626 -10.75971 -10.52366 -10.17724 -9.99385 -9.91809 -9.32127 -4.99181 -0.48933 0.15442 0.20728 0.34539 1.28894 1.35962 1.40527 1.64324 1.88376 2.00716 2.60486 2.63101 3.18129 3.36957 3.39786 3.47246 3.52526 3.56378 3.63762 3.76931 3.79511 3.86225 3.92799 3.97271 4.06107 4.12871 4.14231 4.14791 4.18068 4.19248 4.27933 4.32642 4.36845 4.41723 4.49200 4.58760 4.61886 4.67696 4.72756 4.77279 4.90611 4.92977 4.95578 5.07914 5.13315 5.15119 5.20974 5.30704 5.33584 5.37335 5.39331 5.39775 5.66677 5.75456 6.26993 6.50396 6.74239 6.86540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.078 4.078 3 Si 0.786 3.214 4 C -0.083 4.083 5 C -0.155 4.155 6 C -0.074 4.074 7 C -0.211 4.211 8 C 0.116 3.884 9 O -0.324 6.324 10 C 0.112 3.888 11 C -0.044 4.044 12 C -0.141 4.141 13 C 0.508 3.492 14 O -0.530 6.530 15 O -0.345 6.345 16 C 0.078 3.922 17 C -0.102 4.102 18 H 0.120 0.880 19 C -0.125 4.125 20 C 0.075 3.925 21 H 0.104 0.896 22 O -0.583 6.583 23 C -0.163 4.163 24 C -0.056 4.056 25 C -0.128 4.128 26 C -0.075 4.075 27 C -0.123 4.123 28 C -0.139 4.139 29 H 0.396 0.604 30 H 0.107 0.893 31 H -0.297 1.297 32 H -0.284 1.284 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.133 0.867 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.396 0.604 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.158 0.842 46 H 0.164 0.836 47 H 0.158 0.842 48 H 0.140 0.860 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.454 -3.932 -4.166 5.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.187 4.187 3 Si 0.692 3.308 4 C -0.084 4.084 5 C -0.173 4.173 6 C -0.092 4.092 7 C -0.230 4.230 8 C 0.071 3.929 9 O -0.238 6.238 10 C 0.038 3.962 11 C -0.044 4.044 12 C -0.142 4.142 13 C 0.355 3.645 14 O -0.422 6.422 15 O -0.261 6.261 16 C 0.004 3.996 17 C -0.121 4.121 18 H 0.138 0.862 19 C -0.162 4.162 20 C 0.016 3.984 21 H 0.122 0.878 22 O -0.392 6.392 23 C -0.201 4.201 24 C -0.074 4.074 25 C -0.145 4.145 26 C -0.093 4.093 27 C -0.141 4.141 28 C -0.158 4.158 29 H 0.246 0.754 30 H 0.125 0.875 31 H -0.225 1.225 32 H -0.211 1.211 33 H 0.167 0.833 34 H 0.170 0.830 35 H 0.151 0.849 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.246 0.754 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.175 0.825 46 H 0.182 0.818 47 H 0.176 0.824 48 H 0.158 0.842 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.048 -2.852 -3.162 4.385 hybrid contribution 0.632 -0.971 0.084 1.161 sum -0.416 -3.823 -3.078 4.925 Atomic orbital electron populations 1.86465 1.17113 1.82237 1.50451 1.25315 0.85403 1.11335 0.96685 0.93518 0.77804 0.74813 0.84682 1.20257 0.97600 0.93521 0.97010 1.21181 1.00278 1.00754 0.95078 1.21238 0.97580 0.93264 0.97123 1.21544 1.03068 0.97222 1.01182 1.19150 0.95374 0.83268 0.95101 1.85936 1.71416 1.23038 1.43455 1.21566 0.98566 0.90273 0.85805 1.19682 0.96958 0.93659 0.94105 1.18864 1.04269 0.96518 0.94563 1.21393 0.77922 0.83682 0.81537 1.90801 1.54315 1.19236 1.77869 1.86512 1.63650 1.44103 1.31871 1.23224 0.93320 0.96536 0.86481 1.22354 0.98700 0.97086 0.93919 0.86163 1.23102 0.97278 0.97743 0.98092 1.23411 0.81546 0.98362 0.95050 0.87807 1.86485 1.20037 1.38037 1.94618 1.23756 0.96990 1.01344 0.97996 1.21691 0.94004 0.92508 0.99236 1.21627 0.97561 1.01944 0.93376 1.21877 0.96491 0.92655 0.98254 1.21136 0.97639 0.96731 0.98622 1.20302 1.03766 0.94711 0.97010 0.75438 0.87549 1.22531 1.21099 0.83293 0.82956 0.84933 0.90356 0.90074 0.90683 0.91498 0.88972 0.89988 0.75429 0.90392 0.89716 0.82470 0.81830 0.82402 0.84233 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.21 12.77 -148.98 -1.90 -3.12 16 2 C -0.08 -0.12 2.82 71.24 0.20 0.08 16 3 Si 0.79 -1.01 29.79 68.60 2.04 1.03 16 4 C -0.08 -0.28 5.39 -19.88 -0.11 -0.38 16 5 C -0.16 -0.16 8.67 22.28 0.19 0.03 16 6 C -0.07 -0.15 10.04 22.25 0.22 0.07 16 7 C -0.21 -1.21 9.04 22.37 0.20 -1.01 16 8 C 0.12 0.92 6.69 22.51 0.15 1.07 16 9 O -0.32 -2.72 8.62 -92.46 -0.80 -3.52 16 10 C 0.11 0.80 3.38 71.24 0.24 1.04 16 11 C -0.04 -0.24 5.91 -19.60 -0.12 -0.35 16 12 C -0.14 -0.58 5.87 -20.10 -0.12 -0.70 16 13 C 0.51 3.18 7.88 70.33 0.55 3.73 16 14 O -0.53 -5.35 13.20 19.94 0.26 -5.09 16 15 O -0.35 -1.07 9.47 -56.17 -0.53 -1.61 16 16 C 0.08 0.08 5.31 71.98 0.38 0.46 16 17 C -0.10 0.30 4.02 -10.27 -0.04 0.26 16 18 H 0.12 -0.64 8.14 -2.39 -0.02 -0.66 16 19 C -0.12 0.27 7.47 31.12 0.23 0.51 16 20 C 0.08 -0.20 5.21 31.12 0.16 -0.04 16 21 H 0.10 -0.68 8.14 -2.38 -0.02 -0.70 16 22 O -0.58 -0.40 13.67 -148.98 -2.04 -2.43 16 23 C -0.16 0.44 7.46 31.12 0.23 0.67 16 24 C -0.06 0.05 9.62 22.54 0.22 0.27 16 25 C -0.13 0.47 10.03 22.23 0.22 0.70 16 26 C -0.08 0.17 10.04 22.33 0.22 0.39 16 27 C -0.12 -0.32 9.37 22.23 0.21 -0.11 16 28 C -0.14 -0.93 9.55 22.36 0.21 -0.72 16 29 H 0.40 -2.34 8.70 -74.06 -0.64 -2.98 16 30 H 0.11 0.30 7.96 -2.38 -0.02 0.28 16 31 H -0.30 -1.74 7.11 99.48 0.71 -1.03 16 32 H -0.28 -0.89 7.11 99.48 0.71 -0.19 16 33 H 0.15 -0.57 4.87 -2.91 -0.01 -0.59 16 34 H 0.15 -0.45 8.06 -2.91 -0.02 -0.48 16 35 H 0.13 0.72 6.30 -2.91 -0.02 0.70 16 36 H 0.08 0.66 6.85 -2.39 -0.02 0.65 16 37 H 0.08 0.65 6.88 -2.39 -0.02 0.63 16 38 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 39 H 0.07 0.18 7.84 -2.38 -0.02 0.16 16 40 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 41 H 0.08 0.03 8.10 -2.39 -0.02 0.01 16 42 H 0.40 -2.95 9.12 -74.06 -0.68 -3.62 16 43 H 0.08 0.01 7.90 -2.39 -0.02 -0.01 16 44 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 45 H 0.16 -0.72 7.61 -2.91 -0.02 -0.74 16 46 H 0.16 -1.56 8.06 -2.91 -0.02 -1.58 16 47 H 0.16 -1.17 8.06 -2.91 -0.02 -1.19 16 48 H 0.14 0.38 7.00 -2.91 -0.02 0.36 16 49 H 0.13 0.89 8.06 -2.91 -0.02 0.87 16 Total: 0.00 -19.87 407.57 0.24 -19.63 By element: Atomic # 1 Polarization: -10.58 SS G_CDS: -0.28 Total: -10.86 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 3.48 Total: 5.96 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -5.00 Total: -15.76 kcal Atomic # 14 Polarization: -1.01 SS G_CDS: 2.04 Total: 1.03 kcal Total: -19.87 0.24 -19.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4557136_11354868.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.711 kcal (2) G-P(sol) polarization free energy of solvation -19.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds