Wall clock time and date at job start Sat Mar 6 2021 06:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35998 * 116.99909 * 2 1 4 4 C 1.39154 * 120.06849 * 179.97438 * 3 2 1 5 5 O 1.35997 * 120.07731 * 0.02686 * 4 3 2 6 6 C 1.42896 * 116.99948 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.46776 * 179.97438 * 6 5 4 8 8 O 1.20825 * 120.00247 * 0.02562 * 7 6 5 9 9 O 1.34229 * 119.99563 * 179.97438 * 7 6 5 10 10 C 1.45202 * 116.99732 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47114 * 179.97438 * 10 9 7 12 12 H 1.09005 * 112.85079 * 316.19725 * 11 10 9 13 13 C 1.54052 * 113.61963 * 87.50804 * 11 10 9 14 14 C 1.53781 * 86.98687 * 139.97823 * 13 11 10 15 15 H 1.09002 * 113.61445 * 89.16393 * 14 13 11 16 16 O 1.42905 * 113.61505 * 219.98264 * 14 13 11 17 17 C 1.53783 * 113.61545 * 185.00528 * 11 10 9 18 18 C 1.38565 * 119.85228 * 180.29298 * 4 3 2 19 19 C 1.38246 * 119.99477 * 359.47449 * 18 4 3 20 20 C 1.38258 * 120.15048 * 0.50863 * 19 18 4 21 21 C 1.50696 * 119.92869 * 179.74859 * 20 19 18 22 22 O 1.42904 * 109.46698 * 245.02215 * 21 20 19 23 23 Si 1.86296 * 109.47298 * 5.01474 * 21 20 19 24 24 C 1.38242 * 120.14030 * 359.76404 * 20 19 18 25 25 H 1.08997 * 109.47286 * 300.00219 * 1 2 3 26 26 H 1.09002 * 109.46579 * 60.00402 * 1 2 3 27 27 H 1.08995 * 109.47132 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46962 * 60.00206 * 6 5 4 29 29 H 1.08996 * 109.47097 * 299.99630 * 6 5 4 30 30 H 1.09006 * 109.46657 * 60.00409 * 10 9 7 31 31 H 1.08999 * 109.47306 * 300.00275 * 10 9 7 32 32 H 1.08999 * 113.60931 * 25.47201 * 13 11 10 33 33 H 1.08998 * 113.69722 * 254.49284 * 13 11 10 34 34 H 0.96699 * 113.99826 * 279.13770 * 16 14 13 35 35 H 1.08992 * 113.61796 * 105.46955 * 17 11 10 36 36 H 1.09000 * 113.61157 * 334.56375 * 17 11 10 37 37 H 1.07995 * 120.00562 * 179.70149 * 18 4 3 38 38 H 1.08003 * 119.92577 * 180.25257 * 19 18 4 39 39 H 1.09001 * 109.47360 * 125.02170 * 21 20 19 40 40 H 0.96703 * 113.99638 * 180.02562 * 22 21 20 41 41 H 1.48507 * 110.00244 * 300.00637 * 23 21 20 42 42 H 1.48502 * 109.99730 * 61.31968 * 23 21 20 43 43 H 1.08010 * 119.99625 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4360 1.2863 0.0005 5 8 4.1796 0.1476 0.0005 6 6 5.6004 0.3006 0.0005 7 6 6.2519 -1.0583 0.0011 8 8 5.5696 -2.0554 0.0010 9 8 7.5903 -1.1608 0.0007 10 6 8.1486 -2.5012 0.0019 11 6 9.6763 -2.4172 0.0006 12 1 10.0586 -1.6710 -0.6959 13 6 10.2904 -2.3203 1.4101 14 6 11.3890 -3.2724 0.9086 15 1 12.2405 -2.7596 0.4614 16 8 11.7761 -4.2566 1.8697 17 6 10.3684 -3.7851 -0.1212 18 6 4.0604 2.5233 0.0067 19 6 3.3030 3.6798 0.0013 20 6 1.9224 3.6057 0.0004 21 6 1.1017 4.8696 0.0002 22 8 0.3644 4.9588 1.2211 23 14 2.2310 6.3434 -0.1522 24 6 1.2933 2.3748 -0.0001 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 5.9066 0.8504 0.8906 29 1 5.9066 0.8503 -0.8895 30 1 7.8137 -3.0350 -0.8875 31 1 7.8144 -3.0333 0.8926 32 1 9.6625 -2.7505 2.1903 33 1 10.6565 -1.3248 1.6609 34 1 12.4001 -3.9334 2.5340 35 1 10.7973 -3.9713 -1.1057 36 1 9.7618 -4.6151 0.2412 37 1 5.1386 2.5839 0.0120 38 1 3.7909 4.6433 0.0019 39 1 0.4097 4.8534 -0.8419 40 1 -0.1880 5.7495 1.2900 41 1 3.1794 6.3769 0.9901 42 1 2.9803 6.2788 -1.4327 43 1 0.2146 2.3196 -0.0012 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_471980_11354868.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:12:36 Heat of formation + Delta-G solvation = -170.253366 kcal Electronic energy + Delta-G solvation = -26911.645897 eV Core-core repulsion = 22698.305488 eV Total energy + Delta-G solvation = -4213.340409 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.138 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.94886 -41.43186 -40.34747 -39.48786 -38.82100 -37.51998 -37.02703 -36.02642 -32.30241 -31.57539 -30.64463 -29.01737 -28.43776 -26.86294 -26.21477 -24.10445 -23.37969 -22.54542 -21.92817 -20.67726 -19.87866 -18.73532 -18.60085 -18.39771 -18.18534 -18.04232 -17.92612 -17.05890 -16.97532 -16.54561 -16.29235 -16.21936 -15.85998 -15.58490 -15.50385 -15.02206 -14.71550 -14.18413 -14.14723 -14.09075 -13.77619 -13.56980 -13.56697 -13.44841 -12.89508 -12.80600 -12.50574 -12.40584 -12.31897 -12.24279 -12.19435 -12.02754 -11.85296 -11.74028 -11.44647 -11.30365 -10.84425 -10.38952 -9.82577 -8.91609 -5.01705 0.12509 0.23540 0.95813 1.08958 1.22481 1.59668 1.92002 2.26619 2.35673 2.49066 3.07834 3.29589 3.32507 3.39531 3.47482 3.63333 3.66652 3.78832 3.79660 3.80432 3.81537 3.87900 4.07975 4.11247 4.15228 4.18356 4.24737 4.27124 4.36335 4.40388 4.51682 4.54908 4.62476 4.66194 4.66696 4.85057 4.92666 4.99317 5.02391 5.20790 5.33175 5.33845 5.48524 5.88127 6.46423 6.56366 6.62761 6.66480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.301 6.301 3 C 0.111 3.889 4 C 0.104 3.896 5 O -0.281 6.281 6 C 0.066 3.934 7 C 0.464 3.536 8 O -0.478 6.478 9 O -0.352 6.352 10 C 0.081 3.919 11 C -0.111 4.111 12 H 0.108 0.892 13 C -0.165 4.165 14 C 0.077 3.923 15 H 0.085 0.915 16 O -0.560 6.560 17 C -0.120 4.120 18 C -0.166 4.166 19 C -0.120 4.120 20 C -0.068 4.068 21 C -0.070 4.070 22 O -0.546 6.546 23 Si 0.685 3.315 24 C -0.143 4.143 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.381 0.619 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.141 0.859 38 H 0.125 0.875 39 H 0.075 0.925 40 H 0.383 0.617 41 H -0.250 1.250 42 H -0.254 1.254 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.433 6.382 -1.103 6.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.214 6.214 3 C 0.065 3.935 4 C 0.059 3.941 5 O -0.195 6.195 6 C -0.010 4.010 7 C 0.304 3.696 8 O -0.363 6.363 9 O -0.270 6.270 10 C 0.008 3.992 11 C -0.129 4.129 12 H 0.126 0.874 13 C -0.203 4.203 14 C 0.018 3.982 15 H 0.103 0.897 16 O -0.365 6.365 17 C -0.157 4.157 18 C -0.184 4.184 19 C -0.138 4.138 20 C -0.068 4.068 21 C -0.181 4.181 22 O -0.352 6.352 23 Si 0.586 3.414 24 C -0.161 4.161 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.122 0.878 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.228 0.772 35 H 0.101 0.899 36 H 0.114 0.886 37 H 0.159 0.841 38 H 0.142 0.858 39 H 0.093 0.907 40 H 0.230 0.770 41 H -0.174 1.174 42 H -0.179 1.179 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.997 4.966 -1.426 5.262 hybrid contribution 0.145 0.000 0.215 0.259 sum 1.142 4.966 -1.212 5.237 Atomic orbital electron populations 1.23150 0.77992 1.04488 1.01446 1.86246 1.21473 1.25187 1.88524 1.18234 0.88861 0.85606 1.00808 1.18157 0.88160 0.85301 1.02520 1.86198 1.15746 1.28248 1.89264 1.21895 0.80745 0.92839 1.05529 1.22811 0.81376 0.91405 0.73979 1.90762 1.64035 1.38620 1.42860 1.86415 1.21713 1.34636 1.84234 1.23162 0.92558 0.80179 1.03341 1.22433 0.91998 0.99335 0.99180 0.87403 1.23856 0.98906 1.00807 0.96732 1.23284 0.94981 0.89578 0.90405 0.89675 1.86532 1.67180 1.39216 1.43620 1.23069 0.96817 0.96500 0.99349 1.20966 1.00548 0.90569 1.06353 1.20578 0.93015 0.97669 1.02499 1.19050 0.92748 0.93512 1.01501 1.24664 1.00809 1.02742 0.89846 1.86501 1.63217 1.48520 1.36948 0.95297 0.81194 0.84384 0.80558 1.20924 1.00453 0.90209 1.04545 0.92347 0.92515 0.87782 0.87466 0.87449 0.90440 0.90476 0.88980 0.90625 0.77159 0.89937 0.88638 0.84085 0.85766 0.90738 0.76969 1.17441 1.17881 0.83924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.01 9.81 101.05 0.99 1.00 16 2 O -0.30 -1.43 10.28 -34.23 -0.35 -1.78 16 3 C 0.11 0.47 6.70 -39.12 -0.26 0.21 16 4 C 0.10 0.40 6.70 -39.12 -0.26 0.14 16 5 O -0.28 -1.29 9.45 -47.38 -0.45 -1.74 16 6 C 0.07 0.04 5.33 36.01 0.19 0.24 16 7 C 0.46 1.42 8.03 36.01 0.29 1.71 16 8 O -0.48 -3.36 16.25 -25.48 -0.41 -3.78 16 9 O -0.35 -0.53 10.22 -39.25 -0.40 -0.93 16 10 C 0.08 0.06 5.30 37.16 0.20 0.25 16 11 C -0.11 0.11 4.03 -89.66 -0.36 -0.25 16 12 H 0.11 -0.20 8.14 -51.93 -0.42 -0.62 16 13 C -0.17 0.16 7.48 -25.78 -0.19 -0.03 16 14 C 0.08 -0.06 5.20 -25.92 -0.13 -0.20 16 15 H 0.09 -0.19 8.14 -51.93 -0.42 -0.62 16 16 O -0.56 -0.37 13.67 -35.23 -0.48 -0.85 16 17 C -0.12 0.09 7.47 -25.92 -0.19 -0.11 16 18 C -0.17 -0.27 9.04 -39.46 -0.36 -0.63 16 19 C -0.12 -0.26 8.66 -39.57 -0.34 -0.60 16 20 C -0.07 -0.16 5.38 -104.61 -0.56 -0.72 16 21 C -0.07 0.02 2.79 36.00 0.10 0.12 16 22 O -0.55 0.05 12.81 -35.23 -0.45 -0.40 16 23 Si 0.68 -1.02 29.84 -169.99 -5.07 -6.09 16 24 C -0.14 -0.38 8.67 -39.46 -0.34 -0.72 16 25 H 0.06 -0.03 7.66 -51.93 -0.40 -0.42 16 26 H 0.06 -0.05 7.66 -51.93 -0.40 -0.45 16 27 H 0.10 -0.10 8.14 -51.93 -0.42 -0.53 16 28 H 0.11 -0.20 7.65 -51.93 -0.40 -0.60 16 29 H 0.11 -0.23 7.68 -51.93 -0.40 -0.63 16 30 H 0.08 0.06 8.13 -51.93 -0.42 -0.37 16 31 H 0.08 0.09 7.84 -51.93 -0.41 -0.31 16 32 H 0.09 -0.01 7.90 -51.93 -0.41 -0.42 16 33 H 0.08 -0.12 8.14 -51.93 -0.42 -0.55 16 34 H 0.38 -1.29 9.12 45.56 0.42 -0.87 16 35 H 0.08 -0.13 8.14 -51.93 -0.42 -0.56 16 36 H 0.10 0.01 8.10 -51.93 -0.42 -0.41 16 37 H 0.14 -0.21 6.30 -52.49 -0.33 -0.54 16 38 H 0.13 0.14 4.85 -52.48 -0.25 -0.11 16 39 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 40 H 0.38 -1.99 8.74 45.56 0.40 -1.59 16 41 H -0.25 -0.38 7.05 56.52 0.40 0.02 16 42 H -0.25 -0.22 7.11 56.52 0.40 0.18 16 43 H 0.14 0.13 6.30 -52.48 -0.33 -0.20 16 LS Contribution 363.91 15.07 5.48 5.48 Total: 0.00 -11.36 363.91 -8.46 -19.82 By element: Atomic # 1 Polarization: -5.07 SS G_CDS: -5.08 Total: -10.16 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -1.24 Total: 0.42 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -2.55 Total: -9.47 kcal Atomic # 14 Polarization: -1.02 SS G_CDS: -5.07 Total: -6.09 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -11.36 -8.46 -19.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_471980_11354868.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.437 kcal (2) G-P(sol) polarization free energy of solvation -11.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds